cluster # 4297

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Anopheles gambiae
cluster # 4297 cluster # 4297 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4297#0 length = 596 sequences # 1

consensus_4297#1 length = 494 sequences # 1
consensus_4297#2 length = 421 sequences # 1

consensusID : consensus_4297#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 596
fasta sequence

                              [AATCCCCGAGGTTAAGGTAAATGAAAGATGGGCNTAAAAAATATAAAACCCCGTAAAACAAAACGTCTCCCGTCCGATGAGTAATGGTTGTGTAACGAGAGAGCGGGAGAGAAAGAGAGATAGTGCGTAATTAAATTAAATTATATTTGAAACACCACTCCGCAACCGCACGGGCAGGAAAGGAAAATTGAATTCAAAACAGAACCGAAACAGAACGGACCCCCAAAAACCAGTGCCACCATGCAGCAGTCGTCCTGCTTGATGCTGATGATGAAGGGTACACTGGGAATAATAACAAAATAAAAAAGCTACACGCATTGCAGAGCGCAAAAAGTAGAAGAGAATGGAAATAAATGTCCAAGAAGGCAATAAAATAATGGTTGGTTGGCTGGCCCCGCGCGCGATATTACAATGCAGGGCGGGCCGGAAGGTCGGATGTCTTTGTGGTCTTTGAAGAACGTGGAACCGAGGTGTAACAAAAAGAAGTGGTAATAAAGTGAAAATTGAATGATAATGTACCTCCTACCCACAGGTCCCTTCTTAAAAACTCCCAACGACGACCCCAGTGGTCTAACGCCCCGCGCCCAACCCCCCCN]

[+] EMBL AL933568             [AATCCCCGAGGTTAAGGTAAATGAAAGATGGGCNTAAAAAATATAAAACCCCGTAAAACAAAACGTCTCCCGTCCGATGAGTAATGGTTGTGTAACGAGAGAGCGGGAGAGAAAGAGAGATAGTGCGTAATTAAATTAAATTATATTTGAAACACCACTCCGCAACCGCACGGGCAGGAAAGGAAAATTGAATTCAAAACAGAACCGAAACAGAACGGACCCCCAAAAACCAGTGCCACCATGCAGCAGTCGTCCTGCTTGATGCTGATGATGAAGGGTACACTGGGAATAATAACAAAATAAAAAAGCTACACGCATTGCAGAGCGCAAAAAGTAGAAGAGAATGGAAATAAATGTCCAAGAAGGCAATAAAATAATGGTTGGTTGGCTGGCCCCGCGCGCGATATTACAATGCAGGGCGGGCCGGAAGGTCGGATGTCTTTGTGGTCTTTGAAGAACGTGGAACCGAGGTGTAACAAAAAGAAGTGGTAATAAAGTGAAAATTGAATGATAATGTACCTCCTACCCACAGGTCCCTTCTTAAAAACTCCCAACGACGACCCCAGTGGTCTAACGCCCCGCGCCCAACCCCCCCN]




>consensus_4297#0
AATCCCCGAGGTTAAGGTAAATGAAAGATGGGCNTAAAAAATATAAAACCCCGTAAAACA
AAACGTCTCCCGTCCGATGAGTAATGGTTGTGTAACGAGAGAGCGGGAGAGAAAGAGAGA
TAGTGCGTAATTAAATTAAATTATATTTGAAACACCACTCCGCAACCGCACGGGCAGGAA
AGGAAAATTGAATTCAAAACAGAACCGAAACAGAACGGACCCCCAAAAACCAGTGCCACC
ATGCAGCAGTCGTCCTGCTTGATGCTGATGATGAAGGGTACACTGGGAATAATAACAAAA
TAAAAAAGCTACACGCATTGCAGAGCGCAAAAAGTAGAAGAGAATGGAAATAAATGTCCA
AGAAGGCAATAAAATAATGGTTGGTTGGCTGGCCCCGCGCGCGATATTACAATGCAGGGC
GGGCCGGAAGGTCGGATGTCTTTGTGGTCTTTGAAGAACGTGGAACCGAGGTGTAACAAA
AAGAAGTGGTAATAAAGTGAAAATTGAATGATAATGTACCTCCTACCCACAGGTCCCTTC
TTAAAAACTCCCAACGACGACCCCAGTGGTCTAACGCCCCGCGCCCAACCCCCCCN

consensusID : consensus_4297#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence

                              [AGGCAAGAATCNGGCACGTNGGAGGTTGTGTAACGAGAGAGCGCNAGAGAATAGAGATAGTGCGTAATTAAATTAAATTATATTTGAAACACCACTCCGCAACCGCACGGGCAGGAAAGGAAAATTGAATTCAAAACAGAACCGAAACAGAACGGACCCCCAAAAACCAGTGCCACCATGCAGCAGTCGTCCTGCTTGATGCTGATGATGAAGGGTACACTGGGAATAATAACAAAATAAAAAAGCTACACGCATTGCAGAGCGCAAAAAGTAGAAGAGAATGGAAATAAATGTCCAAGAAGGCAATAAAATAATGGTTGGTTGGCTGGCCCCGCGCGCGATATTACAATGCAGGGCGGGCCGGAAGGTCGGATGTCTTTGTGGTCTTTGAACGAACGTGGAACCGAGGTGTAACAAAACAGAAGTGGTAATACAAGTGAAACATTCGAATGATAATGTACCTCCTACCCACAGGTCCCTTCTTCAAAAAACTC]

[+] EMBL BX467220             [AGGCAAGAATCNGGCACGTNGGAGGTTGTGTAACGAGAGAGCGCNAGAGAATAGAGATAGTGCGTAATTAAATTAAATTATATTTGAAACACCACTCCGCAACCGCACGGGCAGGAAAGGAAAATTGAATTCAAAACAGAACCGAAACAGAACGGACCCCCAAAAACCAGTGCCACCATGCAGCAGTCGTCCTGCTTGATGCTGATGATGAAGGGTACACTGGGAATAATAACAAAATAAAAAAGCTACACGCATTGCAGAGCGCAAAAAGTAGAAGAGAATGGAAATAAATGTCCAAGAAGGCAATAAAATAATGGTTGGTTGGCTGGCCCCGCGCGCGATATTACAATGCAGGGCGGGCCGGAAGGTCGGATGTCTTTGTGGTCTTTGAACGAACGTGGAACCGAGGTGTAACAAAACAGAAGTGGTAATACAAGTGAAACATTCGAATGATAATGTACCTCCTACCCACAGGTCCCTTCTTCAAAAAACTC]




>consensus_4297#1
AGGCAAGAATCNGGCACGTNGGAGGTTGTGTAACGAGAGAGCGCNAGAGAATAGAGATAG
TGCGTAATTAAATTAAATTATATTTGAAACACCACTCCGCAACCGCACGGGCAGGAAAGG
AAAATTGAATTCAAAACAGAACCGAAACAGAACGGACCCCCAAAAACCAGTGCCACCATG
CAGCAGTCGTCCTGCTTGATGCTGATGATGAAGGGTACACTGGGAATAATAACAAAATAA
AAAAGCTACACGCATTGCAGAGCGCAAAAAGTAGAAGAGAATGGAAATAAATGTCCAAGA
AGGCAATAAAATAATGGTTGGTTGGCTGGCCCCGCGCGCGATATTACAATGCAGGGCGGG
CCGGAAGGTCGGATGTCTTTGTGGTCTTTGAACGAACGTGGAACCGAGGTGTAACAAAAC
AGAAGTGGTAATACAAGTGAAACATTCGAATGATAATGTACCTCCTACCCACAGGTCCCT
TCTTCAAAAAACTC

consensusID : consensus_4297#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 421
fasta sequence

                              [TGGCTGGCCCCGCGCGCGATATTACAATGCAGGGCGGGCCGGAAGGTCGGATGTCTTTGTGGTCTTTGAAGAACGTGGAACCGAGGTGTAACAAAAAGAAGTGGTAATAAAGTGAAAATTGAATGATAATGTACCTACGGACAGGTCCCACTTCTCCCGCGCTCTTAAAAACTCCCAACGACGACCCCAGTGGTCTAACGCCTTGTTCTCCCCCTCTTTTCCCCCCCCCCCCACCCCTCAGTAAGTTTAACACGTAAGCAGCGGAAGCATCATCTTCAACTTTAAAAGCAATATTTCTTCTACAGAAAACACACAAACACAACAAGTATATAAGCATATTGAAGCATGGAAGGTAGGGCAAGAGAACAAATAAAGCGTACAATTTCACTTCATACTCTCCTCTAAAAGGTGATAAACTAAC]

[+] EMBL BX616256             [TGGCTGGCCCCGCGCGCGATATTACAATGCAGGGCGGGCCGGAAGGTCGGATGTCTTTGTGGTCTTTGAAGAACGTGGAACCGAGGTGTAACAAAAAGAAGTGGTAATAAAGTGAAAATTGAATGATAATGTACCTACGGACAGGTCCCACTTCTCCCGCGCTCTTAAAAACTCCCAACGACGACCCCAGTGGTCTAACGCCTTGTTCTCCCCCTCTTTTCCCCCCCCCCCCACCCCTCAGTAAGTTTAACACGTAAGCAGCGGAAGCATCATCTTCAACTTTAAAAGCAATATTTCTTCTACAGAAAACACACAAACACAACAAGTATATAAGCATATTGAAGCATGGAAGGTAGGGCAAGAGAACAAATAAAGCGTACAATTTCACTTCATACTCTCCTCTAAAAGGTGATAAACTAAC]




>consensus_4297#2
TGGCTGGCCCCGCGCGCGATATTACAATGCAGGGCGGGCCGGAAGGTCGGATGTCTTTGT
GGTCTTTGAAGAACGTGGAACCGAGGTGTAACAAAAAGAAGTGGTAATAAAGTGAAAATT
GAATGATAATGTACCTACGGACAGGTCCCACTTCTCCCGCGCTCTTAAAAACTCCCAACG
ACGACCCCAGTGGTCTAACGCCTTGTTCTCCCCCTCTTTTCCCCCCCCCCCCACCCCTCA
GTAAGTTTAACACGTAAGCAGCGGAAGCATCATCTTCAACTTTAAAAGCAATATTTCTTC
TACAGAAAACACACAAACACAACAAGTATATAAGCATATTGAAGCATGGAAGGTAGGGCA
AGAGAACAAATAAAGCGTACAATTTCACTTCATACTCTCCTCTAAAAGGTGATAAACTAA
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4297#0      AATCCCCGAGGTTAAGGTAAATGAAAGATGGGCNTAAAAAATATAAAACCCCGTAAAACA 60
consensus_4297#1      -------------------------------------------------------AGGCA 5
consensus_4297#2      ------------------------------------------------------------
                                                                                  

consensus_4297#0      AAACGTCTCCCGTCCGATGAGTAATGGTTGTGTAACGAGAGAGCGGGAGAGAAAGAGAGA 120
consensus_4297#1      AGAA---TCNGGCACGTNGGA----GGTTGTGTAACGAGAGAGCGCNAGAGAAT-AGAGA 57
consensus_4297#2      --------------TGGCTGGCCCCGCGCGCGATATTACAATGCAGGGCGGGCCGGAAGG 46
                                     *         *   * *  *  * *  **      *      ** 

consensus_4297#0      TAGTGCGTAATTAAATTAAATTATATTTGAAACACCACTCCGCAACCGCACGGGCAGGAA 180
consensus_4297#1      TAGTGCGTAATTAAATTAAATTATATTTGAAACACCACTCCGCAACCGCACGGGCAGGAA 117
consensus_4297#2      TCGGATGTCTTTG-------TGGTCTTTGAAGAAC----GTGGAACCG-AGGTGTAACAA 94
                      * *   **  **        *  * ******  **      * ***** * * * *  **

consensus_4297#0      AGGAAAATTGAATTCAAAACAGAACCGAAACAGAACGGACCCCCAAAAACCAGTGCCACC 240
consensus_4297#1      AGGAAAATTGAATTCAAAACAGAACCGAAACAGAACGGACCCCCAAAAACCAGTGCCACC 177
consensus_4297#2      AAAGAAGTGGTAATAAAGTGAAAATTGAATGATAATGTACCTACGGACA--GGTCCCACT 152
                      *   ** * * * * **   * **  ***  * ** * ***  *  * *   ** **** 

consensus_4297#0      ATGCAGCAGTCGTCCTGCTTGATGCTGATGATGAAGGGTACACTGGGAATAATAACAAAA 300
consensus_4297#1      ATGCAGCAGTCGTCCTGCTTGATGCTGATGATGAAGGGTACACTGGGAATAATAACAAAA 237
consensus_4297#2      TCTC-----CCGCGCTCTTAAAAACTCCCAACGACGACCCCAGTGGTC-TAACGCCTTGT 206
                         *      **  **  *  *  **    * ** *    ** ***   ***   *    

consensus_4297#0      TAAAAAAGCTACACGCATTGCAGAGCGCAAAAAGTAGAAGAGAATGGAAATAAATGTCCA 360
consensus_4297#1      TAAAAAAGCTACACGCATTGCAGAGCGCAAAAAGTAGAAGAGAATGGAAATAAATGTCCA 297
consensus_4297#2      TCT-----CCCCCTCTTTTCCCCCCCCCCCCACCCCTCAGTAAGTTTAA---------CA 252
                      *       *  *     ** *    * *   *      **  * *  **         **

consensus_4297#0      AGAAGGCAATAAAATAATGGTTGGTTGGCTGGCCCCGCGCGCGATATTACAA-TGCAGGG 419
consensus_4297#1      AGAAGGCAATAAAATAATGGTTGGTTGGCTGGCCCCGCGCGCGATATTACAA-TGCAGGG 356
consensus_4297#2      CGTAAGCAGCGGAAGCATCATCT-----TCAACTTTAAAAGCAATATTTCTTCTACAGAA 307
                       * * ***    **  **  *           *       ** ***** *   * ***  

consensus_4297#0      CGGGCCGGAAGGTCGGATGTCTTTGTGGTCTTTGAA-GAACGTGGAACCGAGGTGTAACA 478
consensus_4297#1      CGGGCCGGAAGGTCGGATGTCTTTGTGGTCTTTGAACGAACGTGGAACCGAGGTGTAACA 416
consensus_4297#2      AACACACAAACACAACAAGTATATAAGCATATTGAA---GCATGGAA----GGTAGGGCA 360
                          *   **      * ** * *  *    *****    * *****    ***    **

consensus_4297#0      AAA-AGAAGTGGTAATA-AAGTGAAAA--TTGAATGATAATGTACCTCCTACCCACAGGT 534
consensus_4297#1      AAACAGAAGTGGTAATACAAGTGAAACATTCGAATGATAATGTACCTCCTACCCACAGGT 476
consensus_4297#2      AGAGAACA-----AATA-AAGCGTACAATTTCACTT----CATACTCTCCTCTAAAAGGT 410
                      * * *  *     **** *** * *    *  * *       ***   *  *  * ****

consensus_4297#0      CCCTTCTTAAAAACTCCCAACGACGACCCCAGTGGTCTAACGCCCCGCGCCCAACCCCCC 594
consensus_4297#1      CCCTTCTTCAAAAAACTC------------------------------------------ 494
consensus_4297#2      GATAAACTAAC------------------------------------------------- 421
                             * *                                                  

consensus_4297#0      CN 596
consensus_4297#1      --
consensus_4297#2      --