These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4299#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 715 fasta sequence [AGTAGAACCTGTGTCCCGAATAAGAAAGCNAANTCATCTGTGTTTTTGAGTCACTTCCTGTACTGCTGAAATACGCCGTGAACTTGGAAGCAAATAGTAATTTTACCAATCGGATCGAAACACCGTAACACCACCAATTGCACAATGTTTCGTACGTCAGTGTTTGACAAAAGTTTGGAAAATGCCACCAGTAATCTCAACCTGGAACCGGACTGGCAGGCGATTCTGGTCATCTGTGATACAATCCGGCAGGGTGATGTGAACGCCAAGTATGCCGTTGGGGCGCTGAAGAAGAAGATGCAGTCGCCGAACCCGATCACGGCCATGTACGCACTGCTGACGCTGGAAAGCATCGTGAAGAACTGCGGCACGCCGGTGCACGATGAGATCGCGAACAAGGCCAACTGCGAGCTGTTCCAGAATCTGGTCAACACCACCAAGCACGAGGAGGTGCGGGCGAAGATGCTCGAGCTGATACAGGCCTGAGCCTACGCGTTCCGGTCCACCATCAAGTATCGCTCGATAAAGGATACGATGAACATTCTGAAAACNGAGGGCCACAAATTCCCGGAGCTGAAGGAAGCCGACGCCATGTTCTCGTCCGACATCGCCCCGGACTGGGTGGACGGGGACGTGTGCCACCGCTGCCGGTCTCAGTTCACGTTCACGGTGCGCAAGCACCACTGCCGCAACTGTGGCCAGGTGTTCTGTGCCC] [+] EMBL BX624321 [AGTAGAACCTGTGTCCCGAATAAGAAAGCNAANTCATCTGTGTTTTTGAGTCACTTCCTGTACTGCTGAAATACGCCGTGAACTTGGAAGCAAATAGTAATTTTACCAATCGGATCGAAACACCGTAACACCACCAATTGCACAATGTTTCGTACGTCAGTGTTTGACAAAAGTTTGGAAAATGCCACCAGTAATCTCAACCTGGAACCGGACTGGCAGGCGATTCTGGTCATCTGTGATACAATCCGGCAGGGTGATGTGAACGCCAAGTATGCCGTTGGGGCGCTGAAGAAGAAGATGCAGTCGCCGAACCCGATCACGGCCATGTACGCACTGCTGACGCTGGAAAGCATCGTGAAGAACTGCGGCACGCCGGTGCACGATGAGATCGCGAACAAGGCCAACTGCGAGCTGTTCCAGAATCTGGTCAACACCACCAAGCACGAGGAGGTGCGGGCGAAGATGCTCGAGCTGATACAGGCCTGAGCCTACGCGTTCCGGTCCACCATCAAGTATCGCTCGATAAAGGATACGATGAACATTCTGAAAACNGA ] [+] EMBL BX605182 [ CCTGTACTGCTGAAATACGCCGTGAACTTGGAAGCAAATAGTAATTTTACCAATCGGATCGAAACACCGTAACACCACCAATTGCACAATGTTTCGTACGTCAGTGTTTGACAAAAGTTTGGAAAATGCCACCAGTAATCTCAACCTGGAACCGGACTGGCAGGCGATTCTGGTCATCTGTGATACAATCCGGCAGGGTGATGTGAACGCCAAGTATGCCGTTGGGGCGCTGAAGAAGAAGATGCAGTCGCCGAACCCGATCACGGCCATGTACGCACTGCTGACGCTGGAAAGCATCGTGAAGAACTGCGGCACGCCGGTGCACGATGAGATCGCGAACAAGGCCAACTGCGAGCTGTTCCAGAATCTGGTCAACACCACCAAGCACGAGGAGGTGCGGGCGAAGATGCTCGAGCTGATACAGGCCTGGGCCTACGCGTTCCGGTCCACCATCAAGTATCGCTCGATAAAGGATACGATGAACATTCTGAAAACGGAGGGCCACAAATTCCCGGAGCTGAAGGAAGCCGACGCCATGTTCTCGTCCGACATCGCCCCGGACTGGGTGGACGGGGACGTGTGCCACCGCTGCCGGTCTCAGTTCACGTTCACGGTGCGCAAGCACCACTGCCGCAACTGTGGCCAGGTGTTCTGTGCCC] consensusID : consensus_4299#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [TCGCCCGAGGTTTATTTTACCAATCGGATCGAAACACCGTAACACCACCAATTGCACAATGTTTCGTACGTCAGTGTTTGACAAAAGTTTGGAAAATGCCACCAGTAATCTCAACCTGGAACCGGACTGGCAGGCGATTCTGGTCATCTGTGATACAATCCGGCAGGGTGATGTGAACGCCAAGTATGCCGTTGGGGCGCTGAAGAAGAAGATGCAGTCGCCGAACCCGATCACGGCCATGTACGCACTGCTGACGCTGGAAAGCATCGTGAAGAACTGCGGCACGCCGGTGCACGATGAGATCGCGAACAAGGCCAACTGCGAGCTGTTCCAGAATCTGGTCAACACCACCAAGCACGAGGAGGTGCGGGCGAAGATGCTCGAGCTGATACAGGCCTGGGCCTACGCGTTCCGGTCCACCATCAAGTATCGCTCGATAAAGGTAAGGTGCCGTTCGTCGTGCCTTGTGTGTGCGCATTGTCGACGAGTTGACAGTCGGTTGCCAGCGTTGAAGGCGAATGCANACGCCTGTGTAGAACAAAAACACGTCGGTCTTGGTGTAGTATTCATTTNTTTTTNACNGNTAAGGAAAAATTAGCAACTTCTTTTATNTCCATACA] [+] EMBL AL934985 [TCGCCCGAGGTTTATTTTACCAATCGGATCGAAACACCGTAACACCACCAATTGCACAATGTTTCGTACGTCAGTGTTTGACAAAAGTTTGGAAAATGCCACCAGTAATCTCAACCTGGAACCGGACTGGCAGGCGATTCTGGTCATCTGTGATACAATCCGGCAGGGTGATGTGAACGCCAAGTATGCCGTTGGGGCGCTGAAGAAGAAGATGCAGTCGCCGAACCCGATCACGGCCATGTACGCACTGCTGACGCTGGAAAGCATCGTGAAGAACTGCGGCACGCCGGTGCACGATGAGATCGCGAACAAGGCCAACTGCGAGCTGTTCCAGAATCTGGTCAACACCACCAAGCACGAGGAGGTGCGGGCGAAGATGCTCGAGCTGATACAGGCCTGGGCCTACGCGTTCCGGTCCACCATCAAGTATCGCTCGATAAAGGTAAGGTGCCGTTCGTCGTGCCTTGTGTGTGCGCATTGTCGACGAGTTGACAGTCGGTTGCCAGCGTTGAAGGCGAATGCANACGCCTGTGTAGAACAAAAACACGTCGGTCTTGGTGTAGTATTCATTTNTTTTTNACNGNTAAGGAAAAATTAGCAACTTCTTTTATNTCCATACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4299#0 AGTAGAACCTGTGTCCCGAATAAGAAAGCNAANTCATCTGTGTTTTTGAGTCACTTCCTG 60 consensus_4299#1 ------------------------------------------------------------ consensus_4299#0 TACTGCTGAAATACGCCGTGAACTTGGAAGCAAATAGTAATTTTACCAATCGGATCGAAA 120 consensus_4299#1 --------------------------TCGCCCGAGGTTTATTTTACCAATCGGATCGAAA 34 * * * ********************* consensus_4299#0 CACCGTAACACCACCAATTGCACAATGTTTCGTACGTCAGTGTTTGACAAAAGTTTGGAA 180 consensus_4299#1 CACCGTAACACCACCAATTGCACAATGTTTCGTACGTCAGTGTTTGACAAAAGTTTGGAA 94 ************************************************************ consensus_4299#0 AATGCCACCAGTAATCTCAACCTGGAACCGGACTGGCAGGCGATTCTGGTCATCTGTGAT 240 consensus_4299#1 AATGCCACCAGTAATCTCAACCTGGAACCGGACTGGCAGGCGATTCTGGTCATCTGTGAT 154 ************************************************************ consensus_4299#0 ACAATCCGGCAGGGTGATGTGAACGCCAAGTATGCCGTTGGGGCGCTGAAGAAGAAGATG 300 consensus_4299#1 ACAATCCGGCAGGGTGATGTGAACGCCAAGTATGCCGTTGGGGCGCTGAAGAAGAAGATG 214 ************************************************************ consensus_4299#0 CAGTCGCCGAACCCGATCACGGCCATGTACGCACTGCTGACGCTGGAAAGCATCGTGAAG 360 consensus_4299#1 CAGTCGCCGAACCCGATCACGGCCATGTACGCACTGCTGACGCTGGAAAGCATCGTGAAG 274 ************************************************************ consensus_4299#0 AACTGCGGCACGCCGGTGCACGATGAGATCGCGAACAAGGCCAACTGCGAGCTGTTCCAG 420 consensus_4299#1 AACTGCGGCACGCCGGTGCACGATGAGATCGCGAACAAGGCCAACTGCGAGCTGTTCCAG 334 ************************************************************ consensus_4299#0 AATCTGGTCAACACCACCAAGCACGAGGAGGTGCGGGCGAAGATGCTCGAGCTGATACAG 480 consensus_4299#1 AATCTGGTCAACACCACCAAGCACGAGGAGGTGCGGGCGAAGATGCTCGAGCTGATACAG 394 ************************************************************ consensus_4299#0 GCCTGAGCCTACGCGTTCCGGTCCACCATCAAGTATCGCTCGATAAAGGATACGATGAAC 540 consensus_4299#1 GCCTGGGCCTACGCGTTCCGGTCCACCATCAAGTATCGCTCGATAAAGG-TAAGGTGCCG 453 ***** ******************************************* ** * ** consensus_4299#0 ATTCTGAAAACNGAGGGCCACAAATTCCCGGAGCTGAAGGAAGCCGACGCCATGTTCTCG 600 consensus_4299#1 TTCGTCGTGCCTTGTGTGTGCGCATTGTCGACGAGTTGACAGTCGGTTGCCAG--CGTTG 511 * * * * * *** ** * * * * **** * * consensus_4299#0 TCCGACATCGCCCCGGACTGGGTGGA-CGGGGACGTGT-GCCACCGCTGCCGGTCTCAGT 658 consensus_4299#1 AAGGCGAATGCANACGCCTGTGTAGAACAAAAACACGTCGGTCTTGGTGTAGTATTCATT 571 * * ** * *** ** ** * ** ** * * ** * *** * consensus_4299#0 TCACGTTCACGGT-GCGCAAGCACCA-CTGCCGCAACTGTGGCCAGGTGTTCTGTGCCC 715 consensus_4299#1 TNTTTTTNACNGNTAAGGAAAAATTAGCAACTTCTTTTATNTCCATACA---------- 620 * ** ** * * ** * * * * * * * *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||