cluster # 4321

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Anopheles gambiae
cluster # 4321 cluster # 4321 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4321#0 length = 725 sequences # 2

consensus_4321#1 length = 523 sequences # 1

consensusID : consensus_4321#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 725
fasta sequence

                              [CCGCGAAAGGATAAAACATGTTTCGAACCACCCGGAGTGGAGGCGACAGCGAATCCAGAAAGAGGAGAGGCAGTAGCGGAATAATGGCAATTGGTGGCCTGAACAGCGCAGCACAGTGCAATGCAACTATCTATGTGGAAGGAGGGAGGCAAGCATTATTAATAACACAATATACTTACGGTTATCAAAAAGAAAAATGGGGCACGGTGGGAGGAACAATATTGAACGTCAAATTGAAACATTAGCAAGAGCGTGGAGCCTATAGGAGCAGCAGGGTGGGAGAATGGTGTAGGATTTCGG------GCAGAAGCAAACAGGCACGCTAAGTCAAGACGGAAGCAGGTCTACAACCTCACCGAACAAC--AATGGTCCGCCAGTGCGCGCGAGAGAGCCGCACGAAACACCAGCAAAACCGAAACAGCCGCCGACAA--TGCGCGCGCGCCACCCCATCCGTGTGTGCTCTTCCCTGTCGATTCTTCTCCGACTGCTCCCCGGGCCGTTACAATGTGGATCTCTGACTCTTTGGCATGTATGATAGCGCTTTGGCATTGCCGATGCTACGATGTAGTTGTGCATGGGAGAAAGGTGTTCATTTAACACCTTTTGTGAGCTTTGGCTCTTGAGTTTTGGAGTTGTATGATTACTTGCTGGCCATGCCTGCCTTATTGGTTGCATCATCTATGATTATCACGGTCCAAAGGAACTTGCACCTTAAAATTGCTGAAAGG]

[+] EMBL BM619226             [CCGCGAAAGGATAAAACATGTTTCGAACCACCCGGAGTGGAGGCGACAGCGAATCCAGAAAGAGGAGAGGCAGTAGCGGAATAATGGCAATTGGTGGCCTGAACAGCGCAGCACAGTGCAATGCAACTATCTATGTGGAAGGAGGGAGGCAAGCATTATTAATAACACAATATACTTACGGTTATCAAAAAGAAAAATGGGGCACGGTGGGAGGAACAATATTGAACGTCAAATTGAAACATTAGCAAGAGCGTGGAGCCTATAGGAGCAGCAGGGTGGGAGAATGGTGTAGGATTTCGG      GCAGAAGCAAACAGGCACGCTAAGTCAAGACGGAAGCAGGTCTACAACCTCACCGAACAAC  AATGGTCCGCCAGTGCGCGCGAGAGAGCCGCACGAAACACCAGCAAAACCGAAACAGCCGCCGACAA  TGCGCGCGCGCCACCCCATCCG                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM612929             [                                                                  ccGGCAGTAGCGGAATAATGGCAATTGGTGGCCTGAACAGCGCAGCACAGTGCAATGCAACTATCTATGTGGAAGGAGGGAGGCAAGCATTATTAATAACACAATATACTTACGGTTATCAAAAAGAAAAATGGGGCACGGTGGGAGGAACAATATTGAACGTCAAATTGAAACATTAGCAAGAGCGTGGAGCCTATAGGAGCAGCAGGGTGGGAGAATGGTGTAGGATTTCGGGCAGAAGCAGAAGCAAACCGGCACGCTAAGTCAAGACGGAAGCAGGTCTACAACCTCACCGAACAACCGAATGGTCCGCCAGTGCGCGCGAGAGAGCCGCACGAAACACCAGCAAAACCGAAACAGCCGCCGACAACGCGCGCGCGCGCCACCCCATCCGTGTGTGCTCTTCCCTGTCGATTCTTCTCCGACTGCTCCCCGGGCCGTTACAATGTGGATCTCTGACTCTTTGGCATGTATGATAGCGCTTTGGCATTGCCGATGCTACGATGTAGTTGTGCATGGGAGAAAGGTGTTCATTTAACACCTTTTGTGAGCTTTGGCTCTTGAGTTTTGGAGTTGTATGATTACTTGCTGGCCATGCCTGCCTTATTGGTTGCATCATCTATGATTATCACGGTCCAAAGGAACTTGCACCTTAAAATTGCTGAAAGG]




>consensus_4321#0
CCGCGAAAGGATAAAACATGTTTCGAACCACCCGGAGTGGAGGCGACAGCGAATCCAGAA
AGAGGAGAGGCAGTAGCGGAATAATGGCAATTGGTGGCCTGAACAGCGCAGCACAGTGCA
ATGCAACTATCTATGTGGAAGGAGGGAGGCAAGCATTATTAATAACACAATATACTTACG
GTTATCAAAAAGAAAAATGGGGCACGGTGGGAGGAACAATATTGAACGTCAAATTGAAAC
ATTAGCAAGAGCGTGGAGCCTATAGGAGCAGCAGGGTGGGAGAATGGTGTAGGATTTCGG
GCAGAAGCAAACAGGCACGCTAAGTCAAGACGGAAGCAGGTCTACAACCTCACCGAACAA
CAATGGTCCGCCAGTGCGCGCGAGAGAGCCGCACGAAACACCAGCAAAACCGAAACAGCC
GCCGACAATGCGCGCGCGCCACCCCATCCGTGTGTGCTCTTCCCTGTCGATTCTTCTCCG
ACTGCTCCCCGGGCCGTTACAATGTGGATCTCTGACTCTTTGGCATGTATGATAGCGCTT
TGGCATTGCCGATGCTACGATGTAGTTGTGCATGGGAGAAAGGTGTTCATTTAACACCTT
TTGTGAGCTTTGGCTCTTGAGTTTTGGAGTTGTATGATTACTTGCTGGCCATGCCTGCCT
TATTGGTTGCATCATCTATGATTATCACGGTCCAAAGGAACTTGCACCTTAAAATTGCTG
AAAGG

consensusID : consensus_4321#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence

                              [ATCGCCCGAGGTTTGGTGTAGGATTTCGGGCAGAAGCAAACAGGCACGCTAAGTCAAGACGGAAGCAGGTCTACAACCTCACCGAACAACAATGGTCCGCCAGTGCGCGCGAGAGAGCCGCACGAAACACCAGCAAAACCGAAACAGCCGCCGACAATGCGCGCGCGCCACCCCATCCGTGTGTGCTCTTCCCTGTCGATTCTTCTCCGACTGCTCCCCGGGCCGTTACAATGTGGATCTCTGACTCTTTGGCATGTATGATAGCGCTTTGGCATTGCCGATGCTACGATGTAGTTGTGCATGGGAGAAAGGTGTTCATTTAACACCTTATTCGTGAGCTTTGGCTCTTGAGTTTTCGGAGCTGTATGATTACTTGCTGGCCATGCCTGCCTTATTGGTTGCATCACTCTATGCGTTATCACGGTCCAAAGGAACTTGCACCTTAAAATTGTTCGAAAGCAACACATTTNGATNGGTTTCGTTGCATTCCCCTACTTGTTGGGAGGTGATTTTCAACAACTGC]

[+] EMBL AL933121             [ATCGCCCGAGGTTTGGTGTAGGATTTCGGGCAGAAGCAAACAGGCACGCTAAGTCAAGACGGAAGCAGGTCTACAACCTCACCGAACAACAATGGTCCGCCAGTGCGCGCGAGAGAGCCGCACGAAACACCAGCAAAACCGAAACAGCCGCCGACAATGCGCGCGCGCCACCCCATCCGTGTGTGCTCTTCCCTGTCGATTCTTCTCCGACTGCTCCCCGGGCCGTTACAATGTGGATCTCTGACTCTTTGGCATGTATGATAGCGCTTTGGCATTGCCGATGCTACGATGTAGTTGTGCATGGGAGAAAGGTGTTCATTTAACACCTTATTCGTGAGCTTTGGCTCTTGAGTTTTCGGAGCTGTATGATTACTTGCTGGCCATGCCTGCCTTATTGGTTGCATCACTCTATGCGTTATCACGGTCCAAAGGAACTTGCACCTTAAAATTGTTCGAAAGCAACACATTTNGATNGGTTTCGTTGCATTCCCCTACTTGTTGGGAGGTGATTTTCAACAACTGC]




>consensus_4321#1
ATCGCCCGAGGTTTGGTGTAGGATTTCGGGCAGAAGCAAACAGGCACGCTAAGTCAAGAC
GGAAGCAGGTCTACAACCTCACCGAACAACAATGGTCCGCCAGTGCGCGCGAGAGAGCCG
CACGAAACACCAGCAAAACCGAAACAGCCGCCGACAATGCGCGCGCGCCACCCCATCCGT
GTGTGCTCTTCCCTGTCGATTCTTCTCCGACTGCTCCCCGGGCCGTTACAATGTGGATCT
CTGACTCTTTGGCATGTATGATAGCGCTTTGGCATTGCCGATGCTACGATGTAGTTGTGC
ATGGGAGAAAGGTGTTCATTTAACACCTTATTCGTGAGCTTTGGCTCTTGAGTTTTCGGA
GCTGTATGATTACTTGCTGGCCATGCCTGCCTTATTGGTTGCATCACTCTATGCGTTATC
ACGGTCCAAAGGAACTTGCACCTTAAAATTGTTCGAAAGCAACACATTTNGATNGGTTTC
GTTGCATTCCCCTACTTGTTGGGAGGTGATTTTCAACAACTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4321#0      CCGCGAAAGGATAAAACATGTTTCGAACCACCCGGAGTGGAGGCGACAGCGAATCCAGAA 60
consensus_4321#1      ------------------------------------------------------------
                                                                                  

consensus_4321#0      AGAGGAGAGGCAGTAGCGGAATAATGGCAATTGGTGGCCTGAACAGCGCAGCACAGTGCA 120
consensus_4321#1      ------------------------------------------------------------
                                                                                  

consensus_4321#0      ATGCAACTATCTATGTGGAAGGAGGGAGGCAAGCATTATTAATAACACAATATACTTACG 180
consensus_4321#1      ------------------------------------------------------------
                                                                                  

consensus_4321#0      GTTATCAAAAAGAAAAATGGGGCACGGTGGGAGGAACAATATTGAACGTCAAATTGAAAC 240
consensus_4321#1      ------------------------------------------------------------
                                                                                  

consensus_4321#0      ATTAGCAAGAGCGTGGAGCCTATAGGAGCAGCAGGGTGGGAGAATGGTGTAGGATTTCGG 300
consensus_4321#1      -------------------------------ATCGCCCGAGGTTTGGTGTAGGATTTCGG 29
                                                        *   *  *  ****************

consensus_4321#0      GCAGAAGCAAACAGGCACGCTAAGTCAAGACGGAAGCAGGTCTACAACCTCACCGAACAA 360
consensus_4321#1      GCAGAAGCAAACAGGCACGCTAAGTCAAGACGGAAGCAGGTCTACAACCTCACCGAACAA 89
                      ************************************************************

consensus_4321#0      CAATGGTCCGCCAGTGCGCGCGAGAGAGCCGCACGAAACACCAGCAAAACCGAAACAGCC 420
consensus_4321#1      CAATGGTCCGCCAGTGCGCGCGAGAGAGCCGCACGAAACACCAGCAAAACCGAAACAGCC 149
                      ************************************************************

consensus_4321#0      GCCGACAATGCGCGCGCGCCACCCCATCCGTGTGTGCTCTTCCCTGTCGATTCTTCTCCG 480
consensus_4321#1      GCCGACAATGCGCGCGCGCCACCCCATCCGTGTGTGCTCTTCCCTGTCGATTCTTCTCCG 209
                      ************************************************************

consensus_4321#0      ACTGCTCCCCGGGCCGTTACAATGTGGATCTCTGACTCTTTGGCATGTATGATAGCGCTT 540
consensus_4321#1      ACTGCTCCCCGGGCCGTTACAATGTGGATCTCTGACTCTTTGGCATGTATGATAGCGCTT 269
                      ************************************************************

consensus_4321#0      TGGCATTGCCGATGCTACGATGTAGTTGTGCATGGGAGAAAGGTGTTCATTTAACACCTT 600
consensus_4321#1      TGGCATTGCCGATGCTACGATGTAGTTGTGCATGGGAGAAAGGTGTTCATTTAACACCTT 329
                      ************************************************************

consensus_4321#0      --TTGTGAGCTTTGGCTCTTGAGTTTT-GGAGTTGTATGATTACTTGCTGGCCATGCCTG 657
consensus_4321#1      ATTCGTGAGCTTTGGCTCTTGAGTTTTCGGAGCTGTATGATTACTTGCTGGCCATGCCTG 389
                        * *********************** **** ***************************

consensus_4321#0      CCTTATTGGTTGCATCA-TCTATG-ATTATCACGGTCCAAAGGAACTTGCACCTTAAAAT 715
consensus_4321#1      CCTTATTGGTTGCATCACTCTATGCGTTATCACGGTCCAAAGGAACTTGCACCTTAAAAT 449
                      ***************** ******  **********************************

consensus_4321#0      TGCTGAAAGG-------------------------------------------------- 725
consensus_4321#1      TGTTCGAAAGCAACACATTTNGATNGGTTTCGTTGCATTCCCCTACTTGTTGGGAGGTGA 509
                      ** *  ** *                                                  

consensus_4321#0      --------------
consensus_4321#1      TTTTCAACAACTGC 523