These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4325#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 637 fasta sequence [ACATGCTGCCTTTTTGTTNGATTTTTTTAAGGTTTGTATCTCTTGTGAGCGTTTTTTTGTTTTTAATATTATTTCGTTAAAAAAGTACACCAAATAGGATGGAAGAAAAATGGTGGAATAAAGTGTGGCTAAGTCTCATAAATACAGCACCGCGCGGAACCCGCTTGCGACCGGCGAAGGCAGCGTCGTCCAACGATGCGCGAAGGGGATGCGCAGCGGCATAGGAGGGGACGACTAAGGGGAAGGGTGGATGAATCCGTGTTTAAGTTGGATGTGATTCTGCTACAGCTAGTCTTTTTCTTCTTGCGCAGTAAGGTAAATACTGCTTGTTTCGCCTTAGCTTAAGCCTAACCTCACGACGCGTACGTTTCCTTAAAGCGCCTTTGACACGTGCTGGTACGCGTTGTAGATCTTCGACTTGGCAGTTTTGAAGGACTTCTTGCGTCCTTTGGTTTTTTTCTCATCCGAATCGAGCGAGTTGGACGAGCTGGAGGCTGGCAGATCGATCGGTGCTATCGAGATGCAGTTGTCAGGGTGTACGAAGAAATGCCAACGAATGACGGCCACGGGTGCGTATCGTTTCCTCCTGCGGTATGATCACGCGATGCTGCAGCGCGCTAATCTTTTCGCCCGTCCA] [+] EMBL BX466887 [ACATGCTGCCTTTTTGTTNGATTTTTTTAAGGTTTGTATCTCTTGTGAGCGTTTTTTTGTTTTTAATATTATTTCGTTAAAAAAGTACACCAAATAGGATGGAAGAAAAATGGTGGAATAAAGTGTGGCTAAGTCTCATAAATACAGCACCGCGCGGAACCCGCTTGCGACCGGCGAAGGCAGCGTCGTCCAACGATGCGCGAAGGGGATGCGCAGCGGCATAGGAGGGGACGACTAAGGGGAAGGGTGGATGAATCCGTGTTTAAGTTGGATGTGATTCTGCTACAGCTAGTCTTTTTCTTCTTGCGCAGTAAGGTAAATACTGCTTGTTTCGCCTTAGCTTAAGCCTAACCTCACGACGCGTACGTTTCCTTAAAGCGCCTTTGACACGTGCTGGTACGCGTTGTAGATCTTCGACTTGGCAGTTTTGAAGGACTTCTTGCGTCCTTTGGTTTTTTTCTCATCCGAATCGAGCGAGTTGGACGAGCTGGAGGCTGGCAGATCGATCGGTGCTATCGAGATGCAGTTGTCAGGGTGTACGAAGAAATGCCAACGAATGACGGCCACGGGTGCG ] [-] EMBL BX620266 [ AGTACNCCAAATAGGATGGAAGAAAAATGGTGGAATAAAGTGTGGCTAAGTCTCATAAATACAGCACCGCGCGGAACCCGCTTGCGACCGGCGAAGGCAGCGTCGTCCAACGATGCGCGAAGGGGATGCGCAGCGGCATGGGAGGGGACGACTAAGGGGAAGGGTGGATGAATCCGTGTTTAAGTTGGATGTGATTCTGCTACAGCTAGTCTTTTTCTTCTTGCGCAGTAAGGTAAATACTGCTTGTTTCGCCTTAGCTTAAGCCTAACCTCACGACGCGTACGTTTCCTTAAAGCGCCTTTG CACGTGCTGGTACGCGTTGTAGATCTTCGACTTGGCAGTTTTGAAGGACTTCTTGCGTCCTTTGGTTTTTTTCTCATCCGAATCGAGCGAGTTGGACGAGCTGGAGGCTGGCAGATCGATCGGTGCTATCGAGATGCAGTTGTCAGGGTGTACGAA AAATNCCANCGAATGACGGCCACGGGTGCGTATCGTTTCCTCCTGCGGTATGATCACGCGATGCTGCAGCGCGCTAATCTTTTCGCCCGTCCA] consensusID : consensus_4325#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [TAACCTCACGACGGCGTACGTTTTCCTGTAAGNGCGCCTTNGCACGTCGTCTGGGTACGCCGTTTGTAGATCTTCCGACCTNGGCCAGTTTTGAAGGACCTTCTTGCGTTCCTTTGGCTTTTCTCTGTCTCATCCGAATCGAGCGAGCTTGTACGAGCTGGAGGCTGGCAGATCGATCGGTGCTATCGAGATGCAGTTGTCAGGGTGTACGAAAAATGCCAACGAATGACGGCCACGGGTGCGTATCCGTTTCCTCCTGCGGTATGATCACGCGATGCCTGCAGCGCGCTAATCTTTTCGCCCGTCCACGTCGACAGCAGTCTCGCCCGCATTGATCAGGATGGCGCCGGGCAGATGGCCGACGCGTTTCCATCGATCCGTGCCAGGCAGCTTCACCTCCAGCCCGCCCTCCGAGTCCTGGGCGAGCAGGGTAAAGGTGCCGTAGTCGCAGTGCGCCCCGCAGCGCGTGAT] [-] EMBL BX469154 [TAACCTCACGACGGCGTACGTTTTCCTGTAAGNGCGCCTTNGCACGTCGTCTGGGTACGCCGTTTGTAGATCTTCCGACCTNGGCCAGTTTTGAAGGACCTTCTTGCGTTCCTTTGGCTTTTCTCTGTCTCATCCGAATCGAGCGAGCTTGTACGAGCTGGAGGCTGGCAGATCGATCGGTGCTATCGAGATGCAGTTGTCAGGGTGTACGAAAAATGCCAACGAATGACGGCCACGGGTGCGTATCCGTTTCCTCCTGCGGTATGATCACGCGATGCCTGCAGCGCGCTAATCTTTTCGCCCGTCCACGTCGACAGCAGTCTCGCCCGCATTGATCAGGATGGCGCCGGGCAGATGGCCGACGCGTTTCCATCGATCCGTGCCAGGCAGCTTCACCTCCAGCCCGCCCTCCGAGTCCTGGGCGAGCAGGGTAAAGGTGCCGTAGTCGCAGTGCGCCCCGCAGCGCGTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4325#0 ACATGCTGCCTTTTTGTTNGATTTTTTTAAGGTTTGTATCTCTTGTGAGCGTTTTTTTGT 60 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 TTTTAATATTATTTCGTTAAAAAAGTACACCAAATAGGATGGAAGAAAAATGGTGGAATA 120 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 AAGTGTGGCTAAGTCTCATAAATACAGCACCGCGCGGAACCCGCTTGCGACCGGCGAAGG 180 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 CAGCGTCGTCCAACGATGCGCGAAGGGGATGCGCAGCGGCATAGGAGGGGACGACTAAGG 240 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 GGAAGGGTGGATGAATCCGTGTTTAAGTTGGATGTGATTCTGCTACAGCTAGTCTTTTTC 300 consensus_4325#1 ------------------------------------------------------------ consensus_4325#0 TTCTTGCGCAGTAAGGTAAATACTGCTTGTTTCGCCTTAGCTTAAGCCTAACCTCACGAC 360 consensus_4325#1 ------------------------------------------------TAACCTCACGAC 12 ************ consensus_4325#0 G-CGTACGTTTCCTTA-AAGCGC-CTTTGACACGTGCT---GGTACGCG--TTGTAGATC 412 consensus_4325#1 GGCGTACGTTTTCCTGTAAGNGCGCCTTNGCACGTCGTCTGGGTACGCCGTTTGTAGATC 72 * ********* * * *** ** * ** ***** * ******* ********* consensus_4325#0 TTC-GACTTGG--CAGTTTTGAAGGAC-TTCTTGCGT-CCTTTGGTTTTTTTCT----CA 463 consensus_4325#1 TTCCGACCTNGGCCAGTTTTGAAGGACCTTCTTGCGTTCCTTTGGCTTTTCTCTGTCTCA 132 *** *** * * ************** ********* ******* **** *** ** consensus_4325#0 TCCGAATCGAGCGAG-TTGGACGAGCTGGAGGCTGGCAGATCGATCGGTGCTATCGAGAT 522 consensus_4325#1 TCCGAATCGAGCGAGCTTGTACGAGCTGGAGGCTGGCAGATCGATCGGTGCTATCGAGAT 192 *************** *** **************************************** consensus_4325#0 GCAGTTGTCAGGGTGTACGAAGAAATGCCAACGAATGACGGCCACGGGTGCGTATC-GTT 581 consensus_4325#1 GCAGTTGTCAGGGTGTACGAA-AAATGCCAACGAATGACGGCCACGGGTGCGTATCCGTT 251 ********************* ********************************** *** consensus_4325#0 TCCTCCTGCGGTATGATCACGCGATGC-TGCAGCGCGCTAATCTTTTCGCCCGTCCA--- 637 consensus_4325#1 TCCTCCTGCGGTATGATCACGCGATGCCTGCAGCGCGCTAATCTTTTCGCCCGTCCACGT 311 *************************** ***************************** consensus_4325#0 ------------------------------------------------------------ consensus_4325#1 CGACAGCAGTCTCGCCCGCATTGATCAGGATGGCGCCGGGCAGATGGCCGACGCGTTTCC 371 consensus_4325#0 ------------------------------------------------------------ consensus_4325#1 ATCGATCCGTGCCAGGCAGCTTCACCTCCAGCCCGCCCTCCGAGTCCTGGGCGAGCAGGG 431 consensus_4325#0 ---------------------------------------- consensus_4325#1 TAAAGGTGCCGTAGTCGCAGTGCGCCCCGCAGCGCGTGAT 471 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||