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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4325#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 637 fasta sequence
[ACATGCTGCCTTTTTGTTNGATTTTTTTAAGGTTTGTATCTCTTGTGAGCGTTTTTTTGTTTTTAATATTATTTCGTTAAAAAAGTACACCAAATAGGATGGAAGAAAAATGGTGGAATAAAGTGTGGCTAAGTCTCATAAATACAGCACCGCGCGGAACCCGCTTGCGACCGGCGAAGGCAGCGTCGTCCAACGATGCGCGAAGGGGATGCGCAGCGGCATAGGAGGGGACGACTAAGGGGAAGGGTGGATGAATCCGTGTTTAAGTTGGATGTGATTCTGCTACAGCTAGTCTTTTTCTTCTTGCGCAGTAAGGTAAATACTGCTTGTTTCGCCTTAGCTTAAGCCTAACCTCACGACGCGTACGTTTCCTTAAAGCGCCTTTGACACGTGCTGGTACGCGTTGTAGATCTTCGACTTGGCAGTTTTGAAGGACTTCTTGCGTCCTTTGGTTTTTTTCTCATCCGAATCGAGCGAGTTGGACGAGCTGGAGGCTGGCAGATCGATCGGTGCTATCGAGATGCAGTTGTCAGGGTGTACGAAGAAATGCCAACGAATGACGGCCACGGGTGCGTATCGTTTCCTCCTGCGGTATGATCACGCGATGCTGCAGCGCGCTAATCTTTTCGCCCGTCCA]
[+] EMBL BX466887 [ACATGCTGCCTTTTTGTTNGATTTTTTTAAGGTTTGTATCTCTTGTGAGCGTTTTTTTGTTTTTAATATTATTTCGTTAAAAAAGTACACCAAATAGGATGGAAGAAAAATGGTGGAATAAAGTGTGGCTAAGTCTCATAAATACAGCACCGCGCGGAACCCGCTTGCGACCGGCGAAGGCAGCGTCGTCCAACGATGCGCGAAGGGGATGCGCAGCGGCATAGGAGGGGACGACTAAGGGGAAGGGTGGATGAATCCGTGTTTAAGTTGGATGTGATTCTGCTACAGCTAGTCTTTTTCTTCTTGCGCAGTAAGGTAAATACTGCTTGTTTCGCCTTAGCTTAAGCCTAACCTCACGACGCGTACGTTTCCTTAAAGCGCCTTTGACACGTGCTGGTACGCGTTGTAGATCTTCGACTTGGCAGTTTTGAAGGACTTCTTGCGTCCTTTGGTTTTTTTCTCATCCGAATCGAGCGAGTTGGACGAGCTGGAGGCTGGCAGATCGATCGGTGCTATCGAGATGCAGTTGTCAGGGTGTACGAAGAAATGCCAACGAATGACGGCCACGGGTGCG ]
[-] EMBL BX620266 [ AGTACNCCAAATAGGATGGAAGAAAAATGGTGGAATAAAGTGTGGCTAAGTCTCATAAATACAGCACCGCGCGGAACCCGCTTGCGACCGGCGAAGGCAGCGTCGTCCAACGATGCGCGAAGGGGATGCGCAGCGGCATGGGAGGGGACGACTAAGGGGAAGGGTGGATGAATCCGTGTTTAAGTTGGATGTGATTCTGCTACAGCTAGTCTTTTTCTTCTTGCGCAGTAAGGTAAATACTGCTTGTTTCGCCTTAGCTTAAGCCTAACCTCACGACGCGTACGTTTCCTTAAAGCGCCTTTG CACGTGCTGGTACGCGTTGTAGATCTTCGACTTGGCAGTTTTGAAGGACTTCTTGCGTCCTTTGGTTTTTTTCTCATCCGAATCGAGCGAGTTGGACGAGCTGGAGGCTGGCAGATCGATCGGTGCTATCGAGATGCAGTTGTCAGGGTGTACGAA AAATNCCANCGAATGACGGCCACGGGTGCGTATCGTTTCCTCCTGCGGTATGATCACGCGATGCTGCAGCGCGCTAATCTTTTCGCCCGTCCA]
consensusID : consensus_4325#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence
[TAACCTCACGACGGCGTACGTTTTCCTGTAAGNGCGCCTTNGCACGTCGTCTGGGTACGCCGTTTGTAGATCTTCCGACCTNGGCCAGTTTTGAAGGACCTTCTTGCGTTCCTTTGGCTTTTCTCTGTCTCATCCGAATCGAGCGAGCTTGTACGAGCTGGAGGCTGGCAGATCGATCGGTGCTATCGAGATGCAGTTGTCAGGGTGTACGAAAAATGCCAACGAATGACGGCCACGGGTGCGTATCCGTTTCCTCCTGCGGTATGATCACGCGATGCCTGCAGCGCGCTAATCTTTTCGCCCGTCCACGTCGACAGCAGTCTCGCCCGCATTGATCAGGATGGCGCCGGGCAGATGGCCGACGCGTTTCCATCGATCCGTGCCAGGCAGCTTCACCTCCAGCCCGCCCTCCGAGTCCTGGGCGAGCAGGGTAAAGGTGCCGTAGTCGCAGTGCGCCCCGCAGCGCGTGAT]
[-] EMBL BX469154 [TAACCTCACGACGGCGTACGTTTTCCTGTAAGNGCGCCTTNGCACGTCGTCTGGGTACGCCGTTTGTAGATCTTCCGACCTNGGCCAGTTTTGAAGGACCTTCTTGCGTTCCTTTGGCTTTTCTCTGTCTCATCCGAATCGAGCGAGCTTGTACGAGCTGGAGGCTGGCAGATCGATCGGTGCTATCGAGATGCAGTTGTCAGGGTGTACGAAAAATGCCAACGAATGACGGCCACGGGTGCGTATCCGTTTCCTCCTGCGGTATGATCACGCGATGCCTGCAGCGCGCTAATCTTTTCGCCCGTCCACGTCGACAGCAGTCTCGCCCGCATTGATCAGGATGGCGCCGGGCAGATGGCCGACGCGTTTCCATCGATCCGTGCCAGGCAGCTTCACCTCCAGCCCGCCCTCCGAGTCCTGGGCGAGCAGGGTAAAGGTGCCGTAGTCGCAGTGCGCCCCGCAGCGCGTGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4325#0 ACATGCTGCCTTTTTGTTNGATTTTTTTAAGGTTTGTATCTCTTGTGAGCGTTTTTTTGT 60
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 TTTTAATATTATTTCGTTAAAAAAGTACACCAAATAGGATGGAAGAAAAATGGTGGAATA 120
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 AAGTGTGGCTAAGTCTCATAAATACAGCACCGCGCGGAACCCGCTTGCGACCGGCGAAGG 180
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 CAGCGTCGTCCAACGATGCGCGAAGGGGATGCGCAGCGGCATAGGAGGGGACGACTAAGG 240
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 GGAAGGGTGGATGAATCCGTGTTTAAGTTGGATGTGATTCTGCTACAGCTAGTCTTTTTC 300
consensus_4325#1 ------------------------------------------------------------
consensus_4325#0 TTCTTGCGCAGTAAGGTAAATACTGCTTGTTTCGCCTTAGCTTAAGCCTAACCTCACGAC 360
consensus_4325#1 ------------------------------------------------TAACCTCACGAC 12
************
consensus_4325#0 G-CGTACGTTTCCTTA-AAGCGC-CTTTGACACGTGCT---GGTACGCG--TTGTAGATC 412
consensus_4325#1 GGCGTACGTTTTCCTGTAAGNGCGCCTTNGCACGTCGTCTGGGTACGCCGTTTGTAGATC 72
* ********* * * *** ** * ** ***** * ******* *********
consensus_4325#0 TTC-GACTTGG--CAGTTTTGAAGGAC-TTCTTGCGT-CCTTTGGTTTTTTTCT----CA 463
consensus_4325#1 TTCCGACCTNGGCCAGTTTTGAAGGACCTTCTTGCGTTCCTTTGGCTTTTCTCTGTCTCA 132
*** *** * * ************** ********* ******* **** *** **
consensus_4325#0 TCCGAATCGAGCGAG-TTGGACGAGCTGGAGGCTGGCAGATCGATCGGTGCTATCGAGAT 522
consensus_4325#1 TCCGAATCGAGCGAGCTTGTACGAGCTGGAGGCTGGCAGATCGATCGGTGCTATCGAGAT 192
*************** *** ****************************************
consensus_4325#0 GCAGTTGTCAGGGTGTACGAAGAAATGCCAACGAATGACGGCCACGGGTGCGTATC-GTT 581
consensus_4325#1 GCAGTTGTCAGGGTGTACGAA-AAATGCCAACGAATGACGGCCACGGGTGCGTATCCGTT 251
********************* ********************************** ***
consensus_4325#0 TCCTCCTGCGGTATGATCACGCGATGC-TGCAGCGCGCTAATCTTTTCGCCCGTCCA--- 637
consensus_4325#1 TCCTCCTGCGGTATGATCACGCGATGCCTGCAGCGCGCTAATCTTTTCGCCCGTCCACGT 311
*************************** *****************************
consensus_4325#0 ------------------------------------------------------------
consensus_4325#1 CGACAGCAGTCTCGCCCGCATTGATCAGGATGGCGCCGGGCAGATGGCCGACGCGTTTCC 371
consensus_4325#0 ------------------------------------------------------------
consensus_4325#1 ATCGATCCGTGCCAGGCAGCTTCACCTCCAGCCCGCCCTCCGAGTCCTGGGCGAGCAGGG 431
consensus_4325#0 ----------------------------------------
consensus_4325#1 TAAAGGTGCCGTAGTCGCAGTGCGCCCCGCAGCGCGTGAT 471
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||