These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4327#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 700 fasta sequence [AGAATCGGCACCNGG-AAGGTTTAACGAAGTGCTTTTCATGG--CTGAAGCGGTGAAGGACGAGTTGATGTTTGACGATTTCCAGAAGGCAACGGAGCAGATCGTTACACCCGTTCCCTGGTTTGAGTTTCAAGCGGTAAGCAACGAGACTGAGCTAAAAGATCTAGACCACAGGCTGGCCACGGACGAGGCGTACAGCAGGAACCTCACCAAATGGCTGAACGCGAAGATACTACACCCGGATCCAAACCATCGCTTACATCAAGCGATGGAGGCAG-TTTTC-AAGC-GC-GAGTTTCTGCCTTCGTGTAGTTGGAAGGGGCGAGCCAAACCGGGGCAATTCAGAATATCCATGAGTGCCCAAAAGTTCATAATGGAATTGTTTCGGGTGGTTGGAAGTAATCGGTTCATTACTATTTCAGATGAATTTGTGGCCAAATTCTTTATTAAGAAACTACCGTTCGCCAAAGCGCGGNTCAACTTGAAAGGTTATAGAAGCAGTGTATGCAATAGGAAATCCTAACTAGGCTCAAATCCGGACAAAGTANAACCCAAAGTCCGGACGTAAAGTAGTTTGGACCGGAACATAGATGGATGCGAAGCACCGTTTCTTATGGTATTAGACTTGTGATACACGAACGTTATAGAGTACTAAGAATTTGTTAANCATATTCTTTTAGGGAGAACGTGTCGGAGTATAGCGCGG] [+] EMBL BX466342 [AGAATCGGCACCNGG AAGGTTTAACGAAGTGCTTTTCATGG CTGAAGCGGTGAAGGACGAGTTGATGTTTGACGATTTCCAGAAGGCAACGGAGCAGATCGTTACACCCGTTCCCTGGTTTGAGTTTCAAGCGGTAAGCAACGAGACTGAGCTAAAAGATCTAGACCACAGGCTGGCCACGGACGAGGCGTACAGCAGGAACCTCACCAAATGGCTGAACGCGAAGATACTACACCCGGATCCAAACCATCGCTTACATCAAGCGATGGAGGCAG TTTTC AAGC GC GAGTTTCTGCCTTCGTGTAGTTGGAAGGGGCGAGCCAAACCGGGGCAATTCAGAATATCCATGAGTGCCCAAAAGTTCATAATGGAATTGTTTCGGGTGGTTGGAAGTAATCGGTTCATTACTATTTCAGATGAATTTGTGGCCAAATTCTTTATTAAGAAACTACCGTTCGCCAAAGCGCGGNTCAACTTGAAAGGTTATAGAAGCAGTGTATGCAATAGGAAATCCTAACTAGGCTCAAATCCGGACAAAGTANAACCCAAAGTCCGGACGTAAAGTAGTTTGGACCGGAACATAGATGGATGCGAAGCACCGTTTCTTATGGTATTAGACTTGTGATACACGAACGTTATAGAGTACTAAGAATTTGTTAANCATATTCTTTTAGGGAGAACGTGTCGGAGTATAGCGCGG] [+] EMBL BX466201 [AGAATCGCCACGAGGNGAAGCTGAACGAAGTGCTTTTCATNGCNCTGAAGCGGTGAAGGACGAGTTGATGTTTGACGATTTCCAGAAGGCAACGGAGCAGATCGTTACACCCGTTCCCTGGTTTGAGTTTCAAGCGGTAAGCAACGAGACTGAGCTAAAAGATCTAGACCACAGGCTGGCCACGGACGAGGCGTACAGCAGGAACCTCACCAAATGGCTGAACGCGAAGATACTACACCCGGATCCAAACCATCGCTTACATCAAGCGATGGAGGCAGTTTTTCAAAGCGGCGGAGTTTCT ] consensusID : consensus_4327#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [CGAATCCCCGAGGTTAAATGGATGCGTCGAACGCACGTGAAAATATAACGAACTGAACTGANACATTATTCGAAAACAGCATGGCCTCATCGCGTGACAAAAGATCCGGCAGTATCTACAAGTTTCGTGATGCACTGATAAAGAAGATAGAGAAGAAGTTTTGAAGAAGAAGAAAGATTGTTGCGGTTGCAGCGTGAAAAGCAAGCAAATAATGAACCATCTGAAGAAGCAGAACCAAGCGCACTAATGTTGACTTGCGACGATGAAGATCCATTCGCTGACCCCAGCAACGCAACGACCGCAGACGTAGTGAAGGTGCTGCGAACCTTGTCGGTCCAGATCGAGCAGCTTTCTTGTAAGCAGGATACATTCCAACACCAGCTAGACGAAACAAAGAGTCGTGTGACGAAGGCTGGATAGAAGGCTGAACGAAGGTGCTTTTCATGGCTGAAGCGGTGAAGGACGAGTTGATGTTTGACGATTTCCAGAAGGCAACGGAGCAGATCGTTACAACCGTTCCCTGGTTTGAGGTTTCAAAGCGGTCAAGGCAACGGAGACTGAGCTAAAAGATCTAGANCACAGGCTGGCCACGGACGAGAGCGTACAGCAGGAAACCTCACAAATGGGTGAACGCGCAAGATACTACACCCGGATCCAAACCCATCGCNTACA] [+] EMBL AL933126 [CGAATCCCCGAGGTTAAATGGATGCGTCGAACGCACGTGAAAATATAACGAACTGAACTGANACATTATTCGAAAACAGCATGGCCTCATCGCGTGACAAAAGATCCGGCAGTATCTACAAGTTTCGTGATGCACTGATAAAGAAGATAGAGAAGAAGTTTTGAAGAAGAAGAAAGATTGTTGCGGTTGCAGCGTGAAAAGCAAGCAAATAATGAACCATCTGAAGAAGCAGAACCAAGCGCACTAATGTTGACTTGCGACGATGAAGATCCATTCGCTGACCCCAGCAACGCAACGACCGCAGACGTAGTGAAGGTGCTGCGAACCTTGTCGGTCCAGATCGAGCAGCTTTCTTGTAAGCAGGATACATTCCAACACCAGCTAGACGAAACAAAGAGTCGTGTGACGAAGGCTGGATAGAAGGCTGAACGAAGGTGCTTTTCATGGCTGAAGCGGTGAAGGACGAGTTGATGTTTGACGATTTCCAGAAGGCAACGGAGCAGATCGTTACAACCGTTCCCTGGTTTGAGGTTTCAAAGCGGTCAAGGCAACGGAGACTGAGCTAAAAGATCTAGANCACAGGCTGGCCACGGACGAGAGCGTACAGCAGGAAACCTCACAAATGGGTGAACGCGCAAGATACTACACCCGGATCCAAACCCATCGCNTACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4327#0 AGAATCGGCACCNGGAAGGTTTAACGAA-GTGCTTTTCATGGCTGAAGCGGTGAAGGAC- 58 consensus_4327#1 ------CGAATCCCCGAGGTTAAATGGATGCGTCGAACGCACGTGAAAATATAACGAACT 54 * * * ***** ** * * * * * **** * * * ** consensus_4327#0 GAGTTGATGTTTGA--CGATTTCCAGAAGGCAACGGAGCAGATCGTTACACCCGTTCCCT 116 consensus_4327#1 GAACTGANACATTATTCGAAAACAGCATGGCCTCATCGCGTGACAAAAGATCCGGCAGTA 114 ** *** * * *** * * *** * ** * * * *** consensus_4327#0 GGTTTGAGTTTCAAGCGGTA--AGCAACGAGACTGAGCTAAAAGATCTAGACCACAGGCT 174 consensus_4327#1 TCTACAAGTTTCGTGATGCACTGATAAAGAAGATAGAGAAGAAGTTTTGAAGAAGAAGAA 174 * ****** * * * ** ** * * *** * * * * * * consensus_4327#0 GGCCACGGACGAGGCGTACAGCAGGAACCTCAC-CAAATGGCTGAACGC--GAAGATACT 231 consensus_4327#1 AG--ATTGTTGCGGT-TGCAGCGTGAAAAGCAAGCAAATAATGAACCATCTGAAGAAGCA 231 * * * * ** * **** *** ** ***** * * ***** * consensus_4327#0 ACACCCGGATCCAAACCATCGCTTACATCAAGCGATGGAGG-CAGTTTTCAAGCGCGAGT 290 consensus_4327#1 GAACCAAG---CGCACTAATGTTGACTTGCGACGATGAAGATCCATTCGCTGACCCCAGC 288 *** * * ** * * * ** * ***** ** * ** * * * ** consensus_4327#0 --TTCTGCCTTCGTGTAGTTGGAAGGGGCGAGCCAAACCGGGGCAATTCAGAATATCCAT 348 consensus_4327#1 AACGCAACGACCGCAGACGTAGTGAAGGTGCTGCGAACCTTGTCGGTCCAGATCGAGCA- 347 * * ** * * * ** * * **** * * * **** ** consensus_4327#0 GAGTGCCCAAAAGTTCATAATGGAATTGTTTCGGGTGGTTGGAAGTAATCGGTTCATTAC 408 consensus_4327#1 GCTTTCTTGTAAGCAGGATACATTCCAACACCAGCTAGACGAAACAAAGAGTCGTGTGAC 407 * * * *** * * * * * * ** ** * * ** consensus_4327#0 TATTTC-AGATGAATTTGTGGCCAAATTCTTTATTAAGAAACTACCGTTCGCCAAAGCGC 467 consensus_4327#1 GAAGGCTGGATAGAAGGCTGAACGAAGGTGCTTTTCATGG-CTGAAG--CGGTGAAGGAC 464 * * *** * ** * ** * ** * ** * ** *** * consensus_4327#0 GGNTCAAC--TTGAAAGGTTATAGAAGCAGTGTATGCAATAGGAAATCCTAACTAGGCTC 525 consensus_4327#1 GAGTTGATGTTTGACGATTTCCAGAAGGCA---ACGGAGCAGATCGTTACAACCGTTCCC 521 * * * **** ** ***** * * * ** * *** * * consensus_4327#0 AAATCCGGA--CAAAGTANAACCCAAAGTCCGGACGTAAAGTAGTTTGGACCGGAACATA 583 consensus_4327#1 TGGTTTGAGGTTTCAAAGCGGTCAAGGCAACGGAGACTGAGCTAAAAGATCTAGANCACA 581 * * * * * **** ** * * ** ** * consensus_4327#0 GATGGATGCGAAGCACCGTTTCTTATGGTATTAGACTTGT--GATACACGAACGTTATAG 641 consensus_4327#1 GGCTG--GCCACGGACGAGAGCGTACAGCAGGAAACCTCACAAATGGGTGAACGC-GCAA 638 * * ** * * ** * ** * * * ** * ** ***** * consensus_4327#0 AGTACTAAGAATTTGTTAANCATATTCTTTTAGGGAGAACGTGTCGGAGTATAGCGCGG 700 consensus_4327#1 GATACTACACCCGGATCCAAACCCATCGCNTACA------------------------- 672 ***** * * ** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||