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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4328#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 927 fasta sequence
[CCGTTCTGTTAGAAAGCAGTCGTGAATTATGCGTGATCTTGGCAAGCTGCAACTGCCGGAAGATGTCGAGTCAGGTGTATTGCTTACGCTGGAGGATCGTTCTCCAAGACCGTTAAATGATAAGTACAGTCCGTCTATCTTAACGCCGGATTCGAGCAGTTCGCCCAGATCTCCGTTTCGGTTCGACTCGATGCGCTCTTCGGGAAGAAGACCACCACACTACCGACCTGGGTACAAGAAACCCCGCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGGTCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGATGCACAGTGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGGTCCTGTTCGGCGGGCTGTACTGGTTGATCTCGTACACGCACGGCGATCTGGATGAGAATCACTTGCCACCGTTGCAAGGCGACAACAACTGGACGCCATGCATTTCGAACATCTACTCGTTCACGTCGTGCTTTCTGTTTTCGCTCGAAACGCAGCACACGATCGGGTACGGATCGCGCGCCATGGAAGGAAGAGTGTCCGGAGGCGGTGTTCGTGATGACGCTCCAGTCCGTGCACGGTGTGATGGTGCAAGCCTTCCTGGCGGGCATCGTCTTTGCCAAGATGACGCGCTCGAAGGGACGCGCTCAGACGCTTCTCTTCTCAAAGCAGGCCGTCATTTCGCAGCGGGACGGTGAGCTGTGCCTGATGTTTCGCATCGGTGACATGCGCAAGAGCCACATCATCGGAGCGAACGTGCGGGNCCAGCTGATACCGGCGAAAGTGACCGGCGAGCGGGAANTGATGCCCAGTACCGGACCGAGCTGGAGCTGACGTCGGACGACTGCTCGTCGGATGTGTTTTT]
[+] EMBL BM638896 [CCGTTCTGTTAGAAAGCAGTCGTGAATTATGCGTGATCTTGGCAAGCTGCAACTGCCGGAAGATGTCGAGTCAGGTGTATTGCTTACGCTGGAGGATCGTTCTCCAAGACCGTTAAATGATAAGTACAGTCCGTCTATCTTAACGCCGGATTCGAGCAGTTCGCCCAGATCTCCGTTTCGGTTCGACTCGATGCGCTCTTCGGGAAGAAGACCACCACACTACCGACCTGGGTACAAGAAACCCCGCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGGTCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGATGCACAGTGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGGTCCTGTTCGGCGGGCTGTACTGGTTGATCTCGTACACGCACGGCGATCTGGATGAGAATCACTTGCCACCGTTGCAAGGCGACAACAACTGGACGCCATGCATTTCGAACATCTACTCGTTCACGTCGTGCTTTCTGTTTTCGCTCGAAACGCAGCACACGATCGGGTACGGATCGCGCGCCATGGAAGGAAGAGTGTCCGGAGGCGGTGTTCGTGATGACGCTCCAGTCCGTGCACG ]
[+] EMBL BX626445 [ ACCTGGGTACAAGAAACCCCNCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGGTCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGATGCACAGTGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGGTCCTGTTCGGCGGGCTGTACTGGTTGATCTCGTACACGCACGGCGATCTGGATGAGAATCACTTGCCACCGTTGCAAGGCGACAACAACTGGACGCCATGCATTTCGAACATCTACTCGTTCACGTCGTGCTTTCTGTTTTCGCTCGAAACGCAGCACACGATCGGGTACGGATCGCGCGCCATGG AGGAAGAGTGTCCGGAGGCGGTGTTCGTGATGACGCTCCAGTCCGTGCACGGTGTGATGGTGCAAGCCTTCCTGGCGGGCATCGTCTTTGCCAAGATGACGCGCTCGAAGGGACGCGCTCAGACGCTTCTCTTCTCAAAGCAGGCCGTCATTTCGCAGCGGGACGGTGAGCTGTGCCTGATGTTTCGCATCGGTGACATGCGCAAGAGCCACATCATCGGAGCGAACGTGCGGGNCCAGCTGATACCGGCGAAAGTGACCGGCGAGCGGGAANTGATGCCCAGTACCGGACCGAGCTGGAGCTGACGTCGGACGACTGCTCGTCGGATGTGTTTTT]
consensusID : consensus_4328#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 707 fasta sequence
[ATCGCACGAGGGTATCTTGGCAAGCTGCAACTGCCCGGAAGATGTCGAGTCAGGTGTATTGCTTACGCTGGAGGATCGTTCTCCAAGACCGTTAAATGATAAGTACAGTCCGTCTATCTTAACGCCGGATTCGAGCAGTTCGCCCAGATCTCCGTTTCGGTTCGACTCGATGCGCTCTTCGGGAAGAAGACCACCACACTACCGACCTGGGTACAAGAAACCCCGCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGGTCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGAGTGCACAGTGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGGGTCCTGTTCGGCGGGCTGTACATGGTTGATCTCGGTACACGCACGGGCGATCTGGATGAGAATCCACTTGCCACCGTTGCAAGGCGACAACAACTGGACGCCATGGCATTTCGAACATCTACTCGTTCACGGTCAGTGCCTTTCTNGTNTTTCCGGCTCCGAAAACGGCAAGNACACCGAAATCGGGGGTACCGGGAATCGCGGCGGNCCATTGGAGGGAACNAGTTGTTCCGGGAAGGGCAGGGGGTTACGGTAGATTGACCGCNTCCANTTCCCCGTGCNACCAGGNTAGTTGAATGGTCGACAAGGCTTTCCCTAGAGGG]
[+] EMBL BX469637 [ATCGCACGAGGGTATCTTGGCAAGCTGCAACTGCCCGGAAGATGTCGAGTCAGGTGTATTGCTTACGCTGGAGGATCGTTCTCCAAGACCGTTAAATGATAAGTACAGTCCGTCTATCTTAACGCCGGATTCGAGCAGTTCGCCCAGATCTCCGTTTCGGTTCGACTCGATGCGCTCTTCGGGAAGAAGACCACCACACTACCGACCTGGGTACAAGAAACCCCGCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGGTCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGAGTGCACAGTGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGGGTCCTGTTCGGCGGGCTGTACATGGTTGATCTCGGTACACGCACGGGCGATCTGGATGAGAATCCACTTGCCACCGTTGCAAGGCGACAACAACTGGACGCCATGGCATTTCGAACATCTACTCGTTCACGGTCAGTGCCTTTCTNGTNTTTCCGGCTCCGAAAACGGCAAGNACACCGAAATCGGGGGTACCGGGAATCGCGGCGGNCCATTGGAGGGAACNAGTTGTTCCGGGAAGGGCAGGGGGTTACGGTAGATTGACCGCNTCCANTTCCCCGTGCNACCAGGNTAGTTGAATGGTCGACAAGGCTTTCCCTAGAGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4328#0 CCGTTCTGTTAGAAAGCAGTCGTGAATTATGCGTG---ATCTTGGCAAGCTGCAACTGCC 57
consensus_4328#1 -------------------------ATCGCACGAGGGTATCTTGGCAAGCTGCAACTGCC 35
** ** * **********************
consensus_4328#0 -GGAAGATGTCGAGTCAGGTGTATTGCTTACGCTGGAGGATCGTTCTCCAAGACCGTTAA 116
consensus_4328#1 CGGAAGATGTCGAGTCAGGTGTATTGCTTACGCTGGAGGATCGTTCTCCAAGACCGTTAA 95
***********************************************************
consensus_4328#0 ATGATAAGTACAGTCCGTCTATCTTAACGCCGGATTCGAGCAGTTCGCCCAGATCTCCGT 176
consensus_4328#1 ATGATAAGTACAGTCCGTCTATCTTAACGCCGGATTCGAGCAGTTCGCCCAGATCTCCGT 155
************************************************************
consensus_4328#0 TTCGGTTCGACTCGATGCGCTCTTCGGGAAGAAGACCACCACACTACCGACCTGGGTACA 236
consensus_4328#1 TTCGGTTCGACTCGATGCGCTCTTCGGGAAGAAGACCACCACACTACCGACCTGGGTACA 215
************************************************************
consensus_4328#0 AGAAACCCCGCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGG 296
consensus_4328#1 AGAAACCCCGCAAGCGAGCAGTCTTTAAAAACGGATACTGCAACGTGAGTGCTACGAAGG 275
************************************************************
consensus_4328#0 TCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGA-TGCACAG 355
consensus_4328#1 TCCCGCACCAACGATTACGCTTTCTACAAGATATTTTCACCACACTGGTCGAGTGCACAG 335
**************************************************** *******
consensus_4328#0 TGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGG-TCCTGTTCGG 414
consensus_4328#1 TGGCGTTGGACTTTGTTGGTGTTTGCGCTCGGGTTCGTCAGCTCGTGGGGTCCTGTTCGG 395
************************************************* **********
consensus_4328#0 CGGGCTGTAC-TGGTTGATCTCG-TACACGCACGG-CGATCTGGATGAGAATC-ACTTGC 470
consensus_4328#1 CGGGCTGTACATGGTTGATCTCGGTACACGCACGGGCGATCTGGATGAGAATCCACTTGC 455
********** ************ *********** ***************** ******
consensus_4328#0 CACCGTTGCAAGGCGACAACAACTGGACGCCATG-CATTTCGAACATCTACTCGTTCACG 529
consensus_4328#1 CACCGTTGCAAGGCGACAACAACTGGACGCCATGGCATTTCGAACATCTACTCGTTCACG 515
********************************** *************************
consensus_4328#0 TCGTGCTTTCTGTTTTCGCTCGAAACGCAGCACACGATCGGGTACGGATCGCGCGCCATG 589
consensus_4328#1 GTCAGTGCCTTTCTNGTNTTTCCGGCTCCGAAAACGG-CAAGNAC--ACCGAAATCGGGG 572
* * * * * * * * *** * * ** * ** * *
consensus_4328#0 GAAGGAAGAGTGTCCGGAGGCGGTGTTCGTGATGACGCTCCAGTCCGTGCACGGTGTGAT 649
consensus_4328#1 GTACCGGGAATCGCGGCGGNC--CATTGGAGGGAACNAGTTGTTCCGGGAAGGGCAGGGG 630
* * ** * * * * * ** * * ** **** * * ** *
consensus_4328#0 GGTGCAAGCCTTCCTGGCGGGCATCGTCTTTGCCAAGATGACGCGCTCGAAGGGACGCGC 709
consensus_4328#1 GTTACGG---TAGATTGACCGCNTCCANTTCCCCGTGCNACCAGGNTAGTTGA---ATGG 684
* * * * * * ** ** ** ** * * * * * * *
consensus_4328#0 TCAGACGCTTCTCTTCTCAAAGCAGGCCGTCATTTCGCAGCGGGACGGTGAGCTGTGCCT 769
consensus_4328#1 TC-GACAAGGCTTTCCCTAGAGGG------------------------------------ 707
** *** ** * * * **
consensus_4328#0 GATGTTTCGCATCGGTGACATGCGCAAGAGCCACATCATCGGAGCGAACGTGCGGGNCCA 829
consensus_4328#1 ------------------------------------------------------------
consensus_4328#0 GCTGATACCGGCGAAAGTGACCGGCGAGCGGGAANTGATGCCCAGTACCGGACCGAGCTG 889
consensus_4328#1 ------------------------------------------------------------
consensus_4328#0 GAGCTGACGTCGGACGACTGCTCGTCGGATGTGTTTTT 927
consensus_4328#1 --------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||