cluster # 4331

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Anopheles gambiae
cluster # 4331 cluster # 4331 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4331#0 length = 814 sequences # 2

consensus_4331#1 length = 591 sequences # 1

consensusID : consensus_4331#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 814
fasta sequence

                              [TCCTCCCCCCGGTTCCGATACATGGTCAGGGTTCTTTATTCGAATTTGTCGTTTTTTTTTGAAAATCTTCCTCCGATACAAAAGGCAATGAATGGTTTAAAGACGGGAAAATGCTAGAGTGTCATCATGCTAAACATTTGGACCACAATAGTGGCGGGAGAAGCAAGAACAAAACAGGCATAAAGTGCATTATAAATAAGTGCATTGTGGCTCGTTAAGAGGCGAGGTGTGAAGGTTCTGTGCCACGTTGGTGCAAACGAACTGCAGGGAAGAGGGTTGAGCAAAGAGAAAGAAAGAGAGACAGAAAGAGAGAAAAGGGAAAGAGTCGTGAAGAAACTTTGATACCAGTAAGTGTATAATACAAGCAGGAAGTAGGACGGGAAGGAAAAGCTAAATCGTAAAAGTTAAAAACAAACATTTGCCGATAGGATGACACTATTATACACTCTAT-TATATATATACATATTATACCCTTTTTTAAGCTTTATGCAAAACGTTGCAAACGGTAATAGTGCACATTCGTTCTGGTTCACGATCACTGCCCACCACCGGACTCACCATTCCTCCGTCCCCCACACACTTTTTCATCACAAACATGCTGTCCTGCTTTCTGTTTTGCTACAATGTGCCACTGCCTGCCTGCAGTGGGGACTGCAAAGACTTCCAAATAAAAAGGACCAAAGGATTTTATTTTCTAAACCATCCTCTGCCCCCTTCTTCCTCTTCTCCAATCTCCACCGTCCCCTTTCCTTGCAAATTCTCGAGATGGCCAAATTTTTACAATCTCTCATTCATACACACACACATACGCCTA]

[+] EMBL BX612774             [TCCTCCCCCCGGTTCCGATACATGGTCAGGGTTCTTTATTCGAATTTGTCGTTTTTTTTTGAAAATCTTCCTCCGATACAAAAGGCAATGAATGGTTTAAAGACGGGAAAATGCTAGAGTGTCATCATGCTAAACATTTGGACCACAATAGTGGCGGGAGAAGCAAGAACAAAACAGGCATAAAGTGCATTATAAATAAGTGCATTGTGGCTCGTTAAGAGGCGAGGTGTGAAGGTTCTGTGCCACGTTGGTGCAAACGAACTGCAGGGAAGAGGGTTGAGCAAAGAGAAAGAAAGAGAGACAGAAAGAGAGAAAAGGGAAAGAGTCGTGAAGAAACTTTGATACCAGTAAGTGTATAATACAAGCAGGAAGTAGGACGGGAAGGAAAAGCTAAATCGTAAAAGTTAAAAACAAACATTTGCCGATAGGATGACACTATTATACACTCTAT TATATATATACATATTATACCCTTTTTTAAGCTTTATGCAAAACGTTGCAAACGGTAATAGTGCACATTCGTTCTGGTTCACGATCACTGCCCACCACCGGACTCACCATTCCTCCGTCCCCCACACACTTTTTCATCACAAACATGCTGTCCTGCTTTCTGTTTTGCTACAATGTGCCACTGCCTGCCTGCAGTGGGGACTGCAAAGACTTCCAAATAAAAAGGACCAAAGGATTTTATTTTCTAAACCATCCTCTGCCCCCTTCTTCC                                                                                             ]
[+] EMBL BX618074             [                                                                                                                                                                                                                            GGCGAGGTGTGAAGGTTCTGTGCCACGTTGGTGCAAACGAACTGCAGGGAAGAGGGTTGAGCAAAGAGAAAGAAAGAGAGACAGAAAGAGAGAAAAGGGAAAGAGTCGTGAAGAAACTTTGATACCAGTAAGTGTATAATACAAGCAGGAAGTAGGACGGGAAGGAAAAGCTAAATCGTAAAAGTTAAAAACAAACATTTGCCTATAGGATGACACTATTATACACTCTATATATATATATACATATTATACCCTTTTTTAAGCTTTATGCAAAACGTTGCAAACGGTAATAGTGCACATTCGTTCTGGTTCACGATCACTGCCCACCACCGGACTCACCATTCCTCCGTCCCCCACACACTTTTTCATCACAAACATGCTGTCCTGCTTTCTGTTTTGCTACAATGTGCCACTGCCTGCCTGCAGTGGGGACTGCAAAGACTTCCAAATAAAAAGGACCAAAGGATTTTACTTTCTAAACCATCCTCTGCCCCCTTCTTCCTCTTCTCCAATCTCCACCGTCCCCTTTCCTTGCAAATTCTCGAGATGGCCAAATTTTTACAATCTCTCATTCATACACACACACATACGCCTA]




>consensus_4331#0
TCCTCCCCCCGGTTCCGATACATGGTCAGGGTTCTTTATTCGAATTTGTCGTTTTTTTTT
GAAAATCTTCCTCCGATACAAAAGGCAATGAATGGTTTAAAGACGGGAAAATGCTAGAGT
GTCATCATGCTAAACATTTGGACCACAATAGTGGCGGGAGAAGCAAGAACAAAACAGGCA
TAAAGTGCATTATAAATAAGTGCATTGTGGCTCGTTAAGAGGCGAGGTGTGAAGGTTCTG
TGCCACGTTGGTGCAAACGAACTGCAGGGAAGAGGGTTGAGCAAAGAGAAAGAAAGAGAG
ACAGAAAGAGAGAAAAGGGAAAGAGTCGTGAAGAAACTTTGATACCAGTAAGTGTATAAT
ACAAGCAGGAAGTAGGACGGGAAGGAAAAGCTAAATCGTAAAAGTTAAAAACAAACATTT
GCCGATAGGATGACACTATTATACACTCTATTATATATATACATATTATACCCTTTTTTA
AGCTTTATGCAAAACGTTGCAAACGGTAATAGTGCACATTCGTTCTGGTTCACGATCACT
GCCCACCACCGGACTCACCATTCCTCCGTCCCCCACACACTTTTTCATCACAAACATGCT
GTCCTGCTTTCTGTTTTGCTACAATGTGCCACTGCCTGCCTGCAGTGGGGACTGCAAAGA
CTTCCAAATAAAAAGGACCAAAGGATTTTATTTTCTAAACCATCCTCTGCCCCCTTCTTC
CTCTTCTCCAATCTCCACCGTCCCCTTTCCTTGCAAATTCTCGAGATGGCCAAATTTTTA
CAATCTCTCATTCATACACACACACATACGCCTA

consensusID : consensus_4331#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence

                              [TAAACAGGGAACAGTTATTACGTCTAAATAGTATGTCTTACTATTCACCTCAGCTTATCGAAATCGAAAGAGAGACAGAAAGAGAGAAAAGGGAAAGAGTCGTGAAGAAACTTTGATACCAGTAAGTGTATAATACAAGCAGGAAGTAGGACGGGAAGGAAAAGCTAAATCGTAAAAGTTAAAAACAAACATTTGCCGATAGGATGACACTATTATACACTATATATATATATATACATATTATACCCTTTTTTTAAGCTTTATGCAAAACGTTGCAAACGGTAATAGTGCACATTCGTTCTGGTTCACGATCACTGCCCACCACCGGACTCACCATTCCTCCGTCCCCCACACACTTTTTCATCACAAACATGCTGTCCTGCTTTCTGTTTTGCTACAATGTGCCACTGCCTGCCTGCAGTGGGGACTGCAAAGACTTCCAAATAAAAAGGACCAAAGGATTTTATTTTCTAAACCATCCTCTGCCCCCTTCTTCCTCTTCTCCAATCTCCACCGTCCCCTTTCCTTGCAAATTCTCGAGATGGCCAAATTTTTACAATCTCTCATTCATACACACACACATACGCCTAG]

[+] EMBL BX613445             [TAAACAGGGAACAGTTATTACGTCTAAATAGTATGTCTTACTATTCACCTCAGCTTATCGAAATCGAAAGAGAGACAGAAAGAGAGAAAAGGGAAAGAGTCGTGAAGAAACTTTGATACCAGTAAGTGTATAATACAAGCAGGAAGTAGGACGGGAAGGAAAAGCTAAATCGTAAAAGTTAAAAACAAACATTTGCCGATAGGATGACACTATTATACACTATATATATATATATACATATTATACCCTTTTTTTAAGCTTTATGCAAAACGTTGCAAACGGTAATAGTGCACATTCGTTCTGGTTCACGATCACTGCCCACCACCGGACTCACCATTCCTCCGTCCCCCACACACTTTTTCATCACAAACATGCTGTCCTGCTTTCTGTTTTGCTACAATGTGCCACTGCCTGCCTGCAGTGGGGACTGCAAAGACTTCCAAATAAAAAGGACCAAAGGATTTTATTTTCTAAACCATCCTCTGCCCCCTTCTTCCTCTTCTCCAATCTCCACCGTCCCCTTTCCTTGCAAATTCTCGAGATGGCCAAATTTTTACAATCTCTCATTCATACACACACACATACGCCTAG]




>consensus_4331#1
TAAACAGGGAACAGTTATTACGTCTAAATAGTATGTCTTACTATTCACCTCAGCTTATCG
AAATCGAAAGAGAGACAGAAAGAGAGAAAAGGGAAAGAGTCGTGAAGAAACTTTGATACC
AGTAAGTGTATAATACAAGCAGGAAGTAGGACGGGAAGGAAAAGCTAAATCGTAAAAGTT
AAAAACAAACATTTGCCGATAGGATGACACTATTATACACTATATATATATATATACATA
TTATACCCTTTTTTTAAGCTTTATGCAAAACGTTGCAAACGGTAATAGTGCACATTCGTT
CTGGTTCACGATCACTGCCCACCACCGGACTCACCATTCCTCCGTCCCCCACACACTTTT
TCATCACAAACATGCTGTCCTGCTTTCTGTTTTGCTACAATGTGCCACTGCCTGCCTGCA
GTGGGGACTGCAAAGACTTCCAAATAAAAAGGACCAAAGGATTTTATTTTCTAAACCATC
CTCTGCCCCCTTCTTCCTCTTCTCCAATCTCCACCGTCCCCTTTCCTTGCAAATTCTCGA
GATGGCCAAATTTTTACAATCTCTCATTCATACACACACACATACGCCTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4331#0      TCCTCCCCCCGGTTCCGATACATGGTCAGGGTTCTTTATTCGAATTTGTCGTTTTTTTTT 60
consensus_4331#1      ------------------------------------------------------------
                                                                                  

consensus_4331#0      GAAAATCTTCCTCCGATACAAAAGGCAATGAATGGTTTAAAGACGGGAAAATGCTAGAGT 120
consensus_4331#1      ------------------------------------------------------------
                                                                                  

consensus_4331#0      GTCATCATGCTAAACATTTGGACCACAATAGTGGCGGGAGAAGCAAGAACAAAACAGGCA 180
consensus_4331#1      ------------------------------------------------------------
                                                                                  

consensus_4331#0      TAAAGTGCATTATAAATAAGTGCATTGTGGCTCGTTAAGAGGCGAGGTGTGAAGGTTCTG 240
consensus_4331#1      --------------------------------------TAAACAGGGAAC--AGTTATTA 20
                                                             *  *  **     ** *  * 

consensus_4331#0      TGCCACGTTGGTGCAAACGAACTGCAGGGAAGAGGGTTGAGCAAAGAGAAAGAAAGAGAG 300
consensus_4331#1      CGTCTAAATAGTATGT-CTTACTATTCACCTCAGCTT-----ATCGAAATCGAAAGAGAG 74
                       * *    * **     *  ***         **  *     *  ** *  *********

consensus_4331#0      ACAGAAAGAGAGAAAAGGGAAAGAGTCGTGAAGAAACTTTGATACCAGTAAGTGTATAAT 360
consensus_4331#1      ACAGAAAGAGAGAAAAGGGAAAGAGTCGTGAAGAAACTTTGATACCAGTAAGTGTATAAT 134
                      ************************************************************

consensus_4331#0      ACAAGCAGGAAGTAGGACGGGAAGGAAAAGCTAAATCGTAAAAGTTAAAAACAAACATTT 420
consensus_4331#1      ACAAGCAGGAAGTAGGACGGGAAGGAAAAGCTAAATCGTAAAAGTTAAAAACAAACATTT 194
                      ************************************************************

consensus_4331#0      GCCGATAGGATGACACTATTATACACTCTAT-TATATATATACATATTATACCCTTTTTT 479
consensus_4331#1      GCCGATAGGATGACACTATTATACACTATATATATATATATACATATTATACCCTTTTTT 254
                      *************************** *** ****************************

consensus_4331#0      -AAGCTTTATGCAAAACGTTGCAAACGGTAATAGTGCACATTCGTTCTGGTTCACGATCA 538
consensus_4331#1      TAAGCTTTATGCAAAACGTTGCAAACGGTAATAGTGCACATTCGTTCTGGTTCACGATCA 314
                       ***********************************************************

consensus_4331#0      CTGCCCACCACCGGACTCACCATTCCTCCGTCCCCCACACACTTTTTCATCACAAACATG 598
consensus_4331#1      CTGCCCACCACCGGACTCACCATTCCTCCGTCCCCCACACACTTTTTCATCACAAACATG 374
                      ************************************************************

consensus_4331#0      CTGTCCTGCTTTCTGTTTTGCTACAATGTGCCACTGCCTGCCTGCAGTGGGGACTGCAAA 658
consensus_4331#1      CTGTCCTGCTTTCTGTTTTGCTACAATGTGCCACTGCCTGCCTGCAGTGGGGACTGCAAA 434
                      ************************************************************

consensus_4331#0      GACTTCCAAATAAAAAGGACCAAAGGATTTTATTTTCTAAACCATCCTCTGCCCCCTTCT 718
consensus_4331#1      GACTTCCAAATAAAAAGGACCAAAGGATTTTATTTTCTAAACCATCCTCTGCCCCCTTCT 494
                      ************************************************************

consensus_4331#0      TCCTCTTCTCCAATCTCCACCGTCCCCTTTCCTTGCAAATTCTCGAGATGGCCAAATTTT 778
consensus_4331#1      TCCTCTTCTCCAATCTCCACCGTCCCCTTTCCTTGCAAATTCTCGAGATGGCCAAATTTT 554
                      ************************************************************

consensus_4331#0      TACAATCTCTCATTCATACACACACACATACGCCTA- 814
consensus_4331#1      TACAATCTCTCATTCATACACACACACATACGCCTAG 591
                      ************************************