cluster # 4333

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Anopheles gambiae
cluster # 4333 cluster # 4333 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4333#0 length = 869 sequences # 2

consensus_4333#1 length = 549 sequences # 1

consensusID : consensus_4333#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 869
fasta sequence

                              [CCGGAAAAATTAACTCTCACAGTCCCCCCCACTCCTTAATGTGGATTCGAGCGTGCGTGCGTGCGTAGGTGATAAATATCCCCTCTAGAGACGACGGAGACCCCCAGAACACGAACAAAACACGGAAGGGGGGTTGGCGACAAAACTTTCAAAAATACATAAATCACCGTAACAAGCAATATAACGACGGGGTAGAAGAACGGGCCGCGCGGCACGTGACAACGTAGTCAGATCAGCACCACCACGACACCCCCATCCGCGCCTCAATATGAACGGCGGCGCCCCCACCAAAGCCCTCTCGAAGGGTAAGGTGAAAGAGCTGAACGGGCTGGTGGAGGAGCTGATGCAGCACGGGTTCCGGGAGGCGAACGGTGCCGACGAGCTGCTGGCCCAGCACCGCGACATGGCCGGCGTGCTGGACCGCATCCGGCGCGTCTAGCCCAAGCTCCGCACCACCAACGGACGGCCGCGGATGGAAACGGTTGCCCACTTTATGCGGTGGGCGGTCGAGCGGGGCTGCCAGGTGGAAAATGTGCGCGTCGCCGAACACGCCGAGTACGGCGGCCTTGGACTGGAATCCTGTGGGCCAATACCGGCCGGCGAATGCATTATCACCGTACCGAGGAGCATGTTTTTCTACGTCACCAACGAGCCGCGCTACCGGCAGCTGCTCGAGCTGATGCCGGGCGCGATGATGAGCGAGCAGGGCAACATTATGCTGGCGCTCGCCCTCATTATGGAGCGGTTCCGGGCGAAAAGCGACTGGAAGCCGTACCTGGACCTGCTGCCCGACCGGTACACGACACCGCTCTACTACACGACCGAGGACATGGGCGAACTGGCCGAGACGGACGCGTTTCTGCCGGCCC]

[+] EMBL BM617080             [CCGGAAAAATTAACTCTCACAGTCCCCCCCACTCCTTAATGTGGATTCGAGCGTGCGTGCGTGCGTAGGTGATAAATATCCCCTCTAGAGACGACGGAGACCCCCAGAACACGAACAAAACACGGAAGGGGGGTTGGCGACAAAACTTTCAAAAATACATAAATCACCGTAACAAGCAATATAACGACGGGGTAGAAGAACGGGCCGCGCGGCACGTGACAACGTAGTCAGATCAGCACCACCACGACACCCCCATCCGCGCCTCAATATGAACGGCGGCGCCCCCACCAAAGCCCTCTCGAAGGGTAAGGTGAAAGAGCTGAACGGGCTGGTGGAGGAGCTGATGCAGCACGGGTTCCGGGAGGCGAACGGTGCCGACGAGCTGCTGGCCCAGCACCGCGACATGGCCGGCGTGCTGGACCGCATCCGGCGCGTCTAGCCCAAGCTCCGCACCACCAACGGACGGCCGCGGATGGAAACGGTTGCCCACTTTATGCGGTGGGCGGTCGAGCGGGGCTGCCAGGTGGAAAATGTGCGCGTCGCCGAACACGCCGAGTACGGCGGCCTTGGACTG                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM610505             [                                                                                                                                                                                                                                                      ccgCCCCCATCCGCGCCTCAATATGAACGGCGGCGCCCCCACCAAAGCCCTCTCGAAGGGTAAGGTGAAAGAGCTGAACGGGCTGGTGGAGGAGCTGATGCAGCACGGGTTCCGGGAGGCGAACGGTGCCGACGAGCTGCTGGCCCAGCACCGCGACATGGCCGGCGTGCTGGACCGCATCCGGCGCGTCGAGCCCAAGCTCCGCACCACCAACGGACGGCCGCGGATGGAAACGGTTGCCCACTTTATGCGGTGGGCGGTCGAGCGGGGCTGCCAGGTGGAAAATGTGCGCGTCGCCGAACACGCCGAGTACGGCGGCCTTGGACTGGAATCCTGTGGGCCAATACCGGCCGGCGAATGCATTATCACCGTACCGAGGAGCATGTTTTTCTACGTCACCAACGAGCCGCGCTACCGGCAGCTGCTCGAGCTGATGCCGGGCGCGATGATGAGCGAGCAGGGCAACATTATGCTGGCGCTCGCCCTCATTATGGAGCGGTTCCGGGCGAAAAGCGACTGGAAGCCGTACCTGGACCTGCTGCCCGACCGGTACACGACACCGCTCTACTACACGACCGAGGACATGGGCGAACTGGCCGAGACGGACGCGTTTCTGCCGGCCC]




>consensus_4333#0
CCGGAAAAATTAACTCTCACAGTCCCCCCCACTCCTTAATGTGGATTCGAGCGTGCGTGC
GTGCGTAGGTGATAAATATCCCCTCTAGAGACGACGGAGACCCCCAGAACACGAACAAAA
CACGGAAGGGGGGTTGGCGACAAAACTTTCAAAAATACATAAATCACCGTAACAAGCAAT
ATAACGACGGGGTAGAAGAACGGGCCGCGCGGCACGTGACAACGTAGTCAGATCAGCACC
ACCACGACACCCCCATCCGCGCCTCAATATGAACGGCGGCGCCCCCACCAAAGCCCTCTC
GAAGGGTAAGGTGAAAGAGCTGAACGGGCTGGTGGAGGAGCTGATGCAGCACGGGTTCCG
GGAGGCGAACGGTGCCGACGAGCTGCTGGCCCAGCACCGCGACATGGCCGGCGTGCTGGA
CCGCATCCGGCGCGTCTAGCCCAAGCTCCGCACCACCAACGGACGGCCGCGGATGGAAAC
GGTTGCCCACTTTATGCGGTGGGCGGTCGAGCGGGGCTGCCAGGTGGAAAATGTGCGCGT
CGCCGAACACGCCGAGTACGGCGGCCTTGGACTGGAATCCTGTGGGCCAATACCGGCCGG
CGAATGCATTATCACCGTACCGAGGAGCATGTTTTTCTACGTCACCAACGAGCCGCGCTA
CCGGCAGCTGCTCGAGCTGATGCCGGGCGCGATGATGAGCGAGCAGGGCAACATTATGCT
GGCGCTCGCCCTCATTATGGAGCGGTTCCGGGCGAAAAGCGACTGGAAGCCGTACCTGGA
CCTGCTGCCCGACCGGTACACGACACCGCTCTACTACACGACCGAGGACATGGGCGAACT
GGCCGAGACGGACGCGTTTCTGCCGGCCC

consensusID : consensus_4333#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence

                              [CCGCGGACGCGTGGGCTACACGACCGAGGACATGGGCGAACTGGCCGAGACGGACGCGTTTCTGCCGGCCCTGAAGCTGTGCAAGCACATCGCCCGCCAGTACGGGTTCATCCGGAGGTTTGTGCAGGAGAAGGTGGACGAGCTGCGGGACTGCTTCACGTACGATGTGTTCCGCTGGGCTGTCTCGACGGTTATGACACGACAGAACAAAGTACCGGTCAATCTGGCCGAGTTCGACGGGATGGACCACACGCTGGCACTGATCCCGCTCTGGGATATGGCAAACCACGCATTTCCCGACACCGCGAACGAGACTCGATGCGTGGCCGAAACCTGTTACAACGCCACCAACGAGCAGCTGGAGTGTAGCCTGACGCGGGAAGTAAGCGACATCGCCAGCGTGCCAATTTTCATCGTTTACGGCACGAGAACGGATGCCGAATTTCTCGTGCACAATGGCTTTGTCTGCCCCCGTAACCCGCACGCGAACGTACAGAAGCGCTTTACCCTGGTGCCCGCAATTCCCCTGTACAAGGAGCGGGCGCACCT]

[+] EMBL BM577061             [CCGCGGACGCGTGGGCTACACGACCGAGGACATGGGCGAACTGGCCGAGACGGACGCGTTTCTGCCGGCCCTGAAGCTGTGCAAGCACATCGCCCGCCAGTACGGGTTCATCCGGAGGTTTGTGCAGGAGAAGGTGGACGAGCTGCGGGACTGCTTCACGTACGATGTGTTCCGCTGGGCTGTCTCGACGGTTATGACACGACAGAACAAAGTACCGGTCAATCTGGCCGAGTTCGACGGGATGGACCACACGCTGGCACTGATCCCGCTCTGGGATATGGCAAACCACGCATTTCCCGACACCGCGAACGAGACTCGATGCGTGGCCGAAACCTGTTACAACGCCACCAACGAGCAGCTGGAGTGTAGCCTGACGCGGGAAGTAAGCGACATCGCCAGCGTGCCAATTTTCATCGTTTACGGCACGAGAACGGATGCCGAATTTCTCGTGCACAATGGCTTTGTCTGCCCCCGTAACCCGCACGCGAACGTACAGAAGCGCTTTACCCTGGTGCCCGCAATTCCCCTGTACAAGGAGCGGGCGCACCT]




>consensus_4333#1
CCGCGGACGCGTGGGCTACACGACCGAGGACATGGGCGAACTGGCCGAGACGGACGCGTT
TCTGCCGGCCCTGAAGCTGTGCAAGCACATCGCCCGCCAGTACGGGTTCATCCGGAGGTT
TGTGCAGGAGAAGGTGGACGAGCTGCGGGACTGCTTCACGTACGATGTGTTCCGCTGGGC
TGTCTCGACGGTTATGACACGACAGAACAAAGTACCGGTCAATCTGGCCGAGTTCGACGG
GATGGACCACACGCTGGCACTGATCCCGCTCTGGGATATGGCAAACCACGCATTTCCCGA
CACCGCGAACGAGACTCGATGCGTGGCCGAAACCTGTTACAACGCCACCAACGAGCAGCT
GGAGTGTAGCCTGACGCGGGAAGTAAGCGACATCGCCAGCGTGCCAATTTTCATCGTTTA
CGGCACGAGAACGGATGCCGAATTTCTCGTGCACAATGGCTTTGTCTGCCCCCGTAACCC
GCACGCGAACGTACAGAAGCGCTTTACCCTGGTGCCCGCAATTCCCCTGTACAAGGAGCG
GGCGCACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4333#0      CCGGAAAAATTAACTCTCACAGTCCCCCCCACTCCTTAATGTGGATTCGAGCGTGCGTGC 60
consensus_4333#1      ------------------------------------------------------------
                                                                                  

consensus_4333#0      GTGCGTAGGTGATAAATATCCCCTCTAGAGACGACGGAGACCCCCAGAACACGAACAAAA 120
consensus_4333#1      ------------------------------------------------------------
                                                                                  

consensus_4333#0      CACGGAAGGGGGGTTGGCGACAAAACTTTCAAAAATACATAAATCACCGTAACAAGCAAT 180
consensus_4333#1      ------------------------------------------------------------
                                                                                  

consensus_4333#0      ATAACGACGGGGTAGAAGAACGGGCCGCGCGGCACGTGACA-ACGTAGTCAGATCAGCAC 239
consensus_4333#1      ---------CCGCGGACGCGTGGGCTACACGACCGAGGACATGGGCGAACTGGCCGAGAC 51
                                 *  ** *   ****  * ** *    ****   *    * *  *   **

consensus_4333#0      CACCACGACACCCCCATCCGCGCCTCAATATGAACGGCGGCGCCC-CCACCA-AAGCCCT 297
consensus_4333#1      GGACGCGTTTCTGCCGGCCCTGAAGCTGTGCAAGCA-CATCGCCCGCCAGTACGGGTTCA 110
                         * **   *  **  **  *   *  *   * *  *  ***** ***  *   *  * 

consensus_4333#0      CTCGAAGGGTAAGGTGAAAGA-GCTGAACGGGCTGGTGGAGGAGCTGATGCAGCACGGGT 356
consensus_4333#1      TCCGGAGGTTTGTGCAGGAGAAGGTGGACGAGCTGCGGGACTGCTTCACGTACGATGTGT 170
                        ** *** *   *    *** * ** *** ****  ***     * * * *  * * **

consensus_4333#0      TCCGGGAGGCGAACGGTGCCGACGAGCTGCTGGCCCAGCACCGCGACATGGCCGGCGTGC 416
consensus_4333#1      TCCGCTGGGCT----GTCTCGACGG--TTATGACACGACAGAACAAAGTA-CCGGTCAAT 223
                      ****   ***     **  *****   *  ** * *  **   * *  *  ****     

consensus_4333#0      TGGACCGCATCCGGCGCGTCTAGCCCAAGCTCCGCACCACCAACGGACGGCCGCGGATGG 476
consensus_4333#1      CTGGCCGAGTTCGACGGGA-TGGACCACACGCTG--GCACTGATCC-CGCTCTGGGATAT 279
                        * ***  * ** ** *  * * ***  * * *   ***  *    **  *  ****  

consensus_4333#0      AAACGGTTGCCCACTTTATGCGGTGGGCGGTCGAGCGGGGCTGCCAGGTGGAAAATGTGC 536
consensus_4333#1      GGCAAACCACGCATTTCCCGACACCG-CGAACGAGACTCGATGCGTGGCCGAAACCTGTT 338
                               * ** **   *     * **  ****    * ***  **  ****      

consensus_4333#0      GCGTCGCCG--AACACGCCGA-GTACGGCGGCCTTGGACTGGAATCCTGTGGGCCAATAC 593
consensus_4333#1      ACAACGCCACCAACGAGCAGCTGGAGTGTAGCCTGACGCGGGAA----GTAAGC-GACAT 393
                       *  ****   ***  ** *  * *  *  ****    * ****    **  **  * * 

consensus_4333#0      CGGCCGGCGAATGCATTATCACCGTACCGAGGAGCATGTTTTTCTACGTCACCAACGAGC 653
consensus_4333#1      CG-CCAGCGTGCCAATTTTCATCGTTT---ACGGCACGAGAACGGATGCCG--AATTTCT 447
                      ** ** ***     *** *** ***        *** *       * * *   **     

consensus_4333#0      CGCGCTACCGGCAGCTGCTCGAGCTGATGCCG-GGCGCGATGATGAGCGAGCAGGGCAAC 712
consensus_4333#1      CGTGC-----ACAATGGCTTTGTCTGCCCCCGTAACCCGCACGCGAACGTACAGAAGCGC 502
                      ** **      **   ***    ***   ***   * **     ** **  ***     *

consensus_4333#0      ATTATGCTGGCGCTCGCCCTCATTATGGAGCGGTTCCGGGCGAAAAGCGACTGGAAGCCG 772
consensus_4333#1      TTTACCCTGGTGCCCGCAATTCCCCTGTACAAGGAGCGGGCGCACCT------------- 549
                       ***  **** ** ***  *     ** *   *   ****** *                

consensus_4333#0      TACCTGGACCTGCTGCCCGACCGGTACACGACACCGCTCTACTACACGACCGAGGACATG 832
consensus_4333#1      ------------------------------------------------------------
                                                                                  

consensus_4333#0      GGCGAACTGGCCGAGACGGACGCGTTTCTGCCGGCCC 869
consensus_4333#1      -------------------------------------