cluster # 4337

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Anopheles gambiae
cluster # 4337 cluster # 4337 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4337#0 length = 1141 sequences # 2

consensus_4337#1 length = 533 sequences # 1

consensusID : consensus_4337#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1141
fasta sequence

                              [CGACCCACGCGTCCGGCGTTGCGTCCCTCGTTGCCTTTTGGGGAAATTGGAATGGGGGAAGTTTTGGAAAAAGATACCAGAGACACACCTGGTTAGGGCATCAAGCTCCCTCCGTTCAGTAGCGTTCGTTTTTTGTAACGTTTCTAGTGCATACAGATAACCACATCCACACGCATCAACCGGTGTGCGCTTCCAGTAGGGGCCTCGTTGCAAAAAAAAGTGTACTGCACAATACGTATCCGTTCGATGCTTATGCTGTACGCTTAGTCGTTGCGTTGAGTGCAATAGTGTAGCCGAAGCGTGAAGCACATAGTTTGGGAAGAGTCGTCGGCCACTTCATTCCATACCTAGCGTTTGCGTCACAAGTATTGTTCTAGCGATCATTCAACCCCAAATAATCCCAAAAATATAGCCTCCAAAACCACAACCTTCACACTCTGTTCGTCGGCTGGTCGATCTGCAACTGGAATGCAAGTAAAACATGCTGAGATACTGTGATACTTAAGAAAAGCAAATCGCAACTCCAATGGAACCTTACTCCGGGTACCGAACCAAAACTATTACAAACAAAACTCCCGTAAGATTCTAATATTTAGAAAATGTAAATCCTCTGCACTTGCGAGGATCGAAAA-CGAGTGCAGATTCAAAACACACATACAAAGTTATCCAAAGACAGAAGACGAAAGCATCCACACAAAAGGCGAAAAGTTAATTTGCCCATTTTAGAACATCAATTCCAGTTAATTCCACAGTGAGAGCAGATATATCAAAATGCAGACTAAATAACTAAAGCTAATCATAAAAATTTACAAAAACATTTGTGTACCAACCTGTCGAAGAAGGACTCCGCGTTGAAGTCTTGCCCAGGTCGGGATGAGGTCGGCAGAGCGGAAGAACATTAGACCACATACAAAGCTTTTAATTCGAGTTCAAAATTTAGCTGTTAAATATTTAACCTATGTAAACCAAATGGAAACCCATAACCTATATAAAGTAAAGCCACACAACATAAACAAATTGGAAGAAAGACACACAGAAACACAAGTAGGGNCTATAATAGAGTAACAAAGTCGAGCCAATGTAGGACCGATCGATGGGAACATTTTCGAACGATCTTTTGTGTTACCATAGTGGGGGAAAA]

[+] EMBL BM576038             [CGACCCACGCGTCCGGCGTTGCGTCCCTCGTTGCCTTTTGGGGAAATTGGAATGGGGGAAGTTTTGGAAAAAGATACCAGAGACACACCTGGTTAGGGCATCAAGCTCCCTCCGTTCAGTAGCGTTCGTTTTTTGTAACGTTTCTAGTGCATACAGATAACCACATCCACACGCATCAACCGGTGTGCGCTTCCAGTAGGGGCCTCGTTGCAAAAAAAAGTGTACTGCACAATACGTATCCGTTCGATGCTTATGCTGTACGCTTAGTCGTTGCGTTGAGTGCAATAGTGTAGCCGAAGCGTGAAGCACATAGTTTGGGAAGAGTCGTCGGCCACTTCATTCCATACCTAGCGTTTGCGTCACAAGTATTGTTCTAGCGATCATTCAACCCCAAATAATCCCAAAAATATAGCCTCCAAAACCACAACCTTCACACTCTGTTCGTCGGCTGGTCGATCTGCAACTGGAATGCAAGTAAAACATGCTGAGATACTGTGATACTTAAGAAAAGCAAATCGCAACTCCAATGGAACCTTACTCCGGGTACCGAACCAAAACTATTACAAACAAAACTCCCGTAAGATTCTAATATTTAGAAAATGTAAATCCTCTGCACTTGCGAGGATCGAAAA CGAGTGCAGATTCAAAACACACATACAAAGTTATCCAAAGACAGAAGACGAAAGCATCCACA                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX620561             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ACTGGAATGCAAGTAAAACATGCTGAGATTCTGTGATACTTAAGAAAAGCAAATCGCAACTCCAATGGAACCTTACTCCGGGTACCGAACCAAAACTATTACAAACAAAACTCCCGTAAAATTCTAATATTTAGAAAATGTAAATCCTCTGCACTTGCGAGGATCGAAAACCGAATGCAGATTCAAAACACACATACAAAGTTATCCAAAGACAAAAGATGAAATCATCAACACAAAAGGCGAAAAGTTAATTTGCCCATTTTAGAACATCAATTCCAGTTAATTCCACAGTGAGAGCAGATATATCAAAATGCAGACTAAATAACTAAAGCTAATCATAAAAATTTACAAAAACATTTGTGTACCAACCTGTCGAAGAAGGACTCCGCGTTGAAGTCTTGCCCAGGTCGGGATGAGGTCGGCAGAGCGGAAGAACATTAGACCACATACAAAGCTTTTAATTCGAGTTCAAAATTTAGCTGTTAAATATTTAACCTATGTAAACCAAATGGAAACCCATAACCTATATAAAGTAAAGCCACACAACATAAACAAATTGGAAGAAAGACACACAGAAACACAAGTAGGGNCTATAATAGAGTAACAAAGTCGAGCCAATGTAGGACCGATCGATGGGAACATTTTCGAACGATCTTTTGTGTTACCATAGTGGGGGAAAA]




>consensus_4337#0
CGACCCACGCGTCCGGCGTTGCGTCCCTCGTTGCCTTTTGGGGAAATTGGAATGGGGGAA
GTTTTGGAAAAAGATACCAGAGACACACCTGGTTAGGGCATCAAGCTCCCTCCGTTCAGT
AGCGTTCGTTTTTTGTAACGTTTCTAGTGCATACAGATAACCACATCCACACGCATCAAC
CGGTGTGCGCTTCCAGTAGGGGCCTCGTTGCAAAAAAAAGTGTACTGCACAATACGTATC
CGTTCGATGCTTATGCTGTACGCTTAGTCGTTGCGTTGAGTGCAATAGTGTAGCCGAAGC
GTGAAGCACATAGTTTGGGAAGAGTCGTCGGCCACTTCATTCCATACCTAGCGTTTGCGT
CACAAGTATTGTTCTAGCGATCATTCAACCCCAAATAATCCCAAAAATATAGCCTCCAAA
ACCACAACCTTCACACTCTGTTCGTCGGCTGGTCGATCTGCAACTGGAATGCAAGTAAAA
CATGCTGAGATACTGTGATACTTAAGAAAAGCAAATCGCAACTCCAATGGAACCTTACTC
CGGGTACCGAACCAAAACTATTACAAACAAAACTCCCGTAAGATTCTAATATTTAGAAAA
TGTAAATCCTCTGCACTTGCGAGGATCGAAAACGAGTGCAGATTCAAAACACACATACAA
AGTTATCCAAAGACAGAAGACGAAAGCATCCACACAAAAGGCGAAAAGTTAATTTGCCCA
TTTTAGAACATCAATTCCAGTTAATTCCACAGTGAGAGCAGATATATCAAAATGCAGACT
AAATAACTAAAGCTAATCATAAAAATTTACAAAAACATTTGTGTACCAACCTGTCGAAGA
AGGACTCCGCGTTGAAGTCTTGCCCAGGTCGGGATGAGGTCGGCAGAGCGGAAGAACATT
AGACCACATACAAAGCTTTTAATTCGAGTTCAAAATTTAGCTGTTAAATATTTAACCTAT
GTAAACCAAATGGAAACCCATAACCTATATAAAGTAAAGCCACACAACATAAACAAATTG
GAAGAAAGACACACAGAAACACAAGTAGGGNCTATAATAGAGTAACAAAGTCGAGCCAAT
GTAGGACCGATCGATGGGAACATTTTCGAACGATCTTTTGTGTTACCATAGTGGGGGAAA
A

consensusID : consensus_4337#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence

                              [ATCCCGAGGTTAGAGTCGTCGGCACTTCATTCCATACCTANCGTCTGTGTCACAAGTATGTTCTAGCGATCATTCAACCCCCAAATAATCCCAAAAATATAGCCTCCAAAACACAACTTCACACTCTGTTCGTCGGCTGGTCGATCTGCAACTGGAATGCAAGCAAAACATGCTGAGATTCTGTGATACTTAAGAAAAGCAAATCGCAACTCCAATGGAACCTTACTCCGGGTACCGAACCAAAACTATTACAAACAAAACTCCCGTAAAATTCTAATATTTAGAAAATTTAAATCCTCTGCACTTGCGAGGATCGAAAACCGAGTGCAGATTCAAAACACACATACAAAGTTATCCAAAGACAGAAGACGAAAGCATCCACAGAAAAGGCGACAAACGTTAATTTGCCCATTTTAGAATATCAATTCCAGTTAATTCCACAGTGAGAGCAGAGATATCAAAATGCAGACTAAATACCTAAAGCTAATCATACACATTGTCAAACACATTTGTTTACCAACTGTCGAAGAAGG]

[+] EMBL AL930995             [ATCCCGAGGTTAGAGTCGTCGGCACTTCATTCCATACCTANCGTCTGTGTCACAAGTATGTTCTAGCGATCATTCAACCCCCAAATAATCCCAAAAATATAGCCTCCAAAACACAACTTCACACTCTGTTCGTCGGCTGGTCGATCTGCAACTGGAATGCAAGCAAAACATGCTGAGATTCTGTGATACTTAAGAAAAGCAAATCGCAACTCCAATGGAACCTTACTCCGGGTACCGAACCAAAACTATTACAAACAAAACTCCCGTAAAATTCTAATATTTAGAAAATTTAAATCCTCTGCACTTGCGAGGATCGAAAACCGAGTGCAGATTCAAAACACACATACAAAGTTATCCAAAGACAGAAGACGAAAGCATCCACAGAAAAGGCGACAAACGTTAATTTGCCCATTTTAGAATATCAATTCCAGTTAATTCCACAGTGAGAGCAGAGATATCAAAATGCAGACTAAATACCTAAAGCTAATCATACACATTGTCAAACACATTTGTTTACCAACTGTCGAAGAAGG]




>consensus_4337#1
ATCCCGAGGTTAGAGTCGTCGGCACTTCATTCCATACCTANCGTCTGTGTCACAAGTATG
TTCTAGCGATCATTCAACCCCCAAATAATCCCAAAAATATAGCCTCCAAAACACAACTTC
ACACTCTGTTCGTCGGCTGGTCGATCTGCAACTGGAATGCAAGCAAAACATGCTGAGATT
CTGTGATACTTAAGAAAAGCAAATCGCAACTCCAATGGAACCTTACTCCGGGTACCGAAC
CAAAACTATTACAAACAAAACTCCCGTAAAATTCTAATATTTAGAAAATTTAAATCCTCT
GCACTTGCGAGGATCGAAAACCGAGTGCAGATTCAAAACACACATACAAAGTTATCCAAA
GACAGAAGACGAAAGCATCCACAGAAAAGGCGACAAACGTTAATTTGCCCATTTTAGAAT
ATCAATTCCAGTTAATTCCACAGTGAGAGCAGAGATATCAAAATGCAGACTAAATACCTA
AAGCTAATCATACACATTGTCAAACACATTTGTTTACCAACTGTCGAAGAAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4337#0      CGACCCACGCGTCCGGCGTTGCGTCCCTCGTTGCCTTTTGGGGAAATTGGAATGGGGGAA 60
consensus_4337#1      ------------------------------------------------------------
                                                                                  

consensus_4337#0      GTTTTGGAAAAAGATACCAGAGACACACCTGGTTAGGGCATCAAGCTCCCTCCGTTCAGT 120
consensus_4337#1      ------------------------------------------------------------
                                                                                  

consensus_4337#0      AGCGTTCGTTTTTTGTAACGTTTCTAGTGCATACAGATAACCACATCCACACGCATCAAC 180
consensus_4337#1      ------------------------------------------------------------
                                                                                  

consensus_4337#0      CGGTGTGCGCTTCCAGTAGGGGCCTCGTTGCAAAAAAAAGTGTACTGCACAATACGTATC 240
consensus_4337#1      ------------------------------------------------------------
                                                                                  

consensus_4337#0      CGTTCGATGCTTATGCTGTACGCTTAGTCGTTGCGTTGAGTGCAATAGTGTAGCCGAAGC 300
consensus_4337#1      ------------------------------------------------------------
                                                                                  

consensus_4337#0      GTGAAGCACATAGTTTGGGAAGAGTCGTCGGCCACTTCATTCCATACCTAGCGTTTGCGT 360
consensus_4337#1      ---------ATCCCGAGGTTAGAGTCGTCGGC-ACTTCATTCCATACCTANCGTCTGTGT 50
                               **     **  ************ ***************** *** ** **

consensus_4337#0      CACAAGTATTGTTCTAGCGATCATTCAACCCC-AAATAATCCCAAAAATATAGCCTCCAA 419
consensus_4337#1      CACAAGTAT-GTTCTAGCGATCATTCAACCCCCAAATAATCCCAAAAATATAGCCTCCAA 109
                      ********* ********************** ***************************

consensus_4337#0      AACCACAACCTTCACACTCTGTTCGTCGGCTGGTCGATCTGCAACTGGAATGCAAGTAAA 479
consensus_4337#1      AAC-ACAAC-TTCACACTCTGTTCGTCGGCTGGTCGATCTGCAACTGGAATGCAAGCAAA 167
                      *** ***** ********************************************** ***

consensus_4337#0      ACATGCTGAGATACTGTGATACTTAAGAAAAGCAAATCGCAACTCCAATGGAACCTTACT 539
consensus_4337#1      ACATGCTGAGATTCTGTGATACTTAAGAAAAGCAAATCGCAACTCCAATGGAACCTTACT 227
                      ************ ***********************************************

consensus_4337#0      CCGGGTACCGAACCAAAACTATTACAAACAAAACTCCCGTAAGATTCTAATATTTAGAAA 599
consensus_4337#1      CCGGGTACCGAACCAAAACTATTACAAACAAAACTCCCGTAAAATTCTAATATTTAGAAA 287
                      ****************************************** *****************

consensus_4337#0      ATGTAAATCCTCTGCACTTGCGAGGATCGAAAAC-GAGTGCAGATTCAAAACACACATAC 658
consensus_4337#1      ATTTAAATCCTCTGCACTTGCGAGGATCGAAAACCGAGTGCAGATTCAAAACACACATAC 347
                      ** ******************************* *************************

consensus_4337#0      AAAGTTATCCAAAGACAGAAGACGAAAGCATCCACACAAAAGGCGAAAA--GTTAATTTG 716
consensus_4337#1      AAAGTTATCCAAAGACAGAAGACGAAAGCATCCACAGAAAAGGCGACAAACGTTAATTTG 407
                      ************************************ ********* **  *********

consensus_4337#0      CCCATTTTAGAACATCAATTCCAGTTAATTCCACAGTGAGAGCAGATATATCAAAATGCA 776
consensus_4337#1      CCCATTTTAGAATATCAATTCCAGTTAATTCCACAGTGAGAGCAGAGATATCAAAATGCA 467
                      ************ ********************************* *************

consensus_4337#0      GACTAAATAACTAAAGCTAATCATAAAAATTTACAAAAACATTTGTGTACCAACCTGTCG 836
consensus_4337#1      GACTAAATACCTAAAGCTAATCATACACATTGTCAAACACATTTGTTTACCAAC-TGTCG 526
                      ********* *************** * ***  **** ******** ******* *****

consensus_4337#0      AAGAAGGACTCCGCGTTGAAGTCTTGCCCAGGTCGGGATGAGGTCGGCAGAGCGGAAGAA 896
consensus_4337#1      AAGAAGG----------------------------------------------------- 533
                      *******                                                     

consensus_4337#0      CATTAGACCACATACAAAGCTTTTAATTCGAGTTCAAAATTTAGCTGTTAAATATTTAAC 956
consensus_4337#1      ------------------------------------------------------------
                                                                                  

consensus_4337#0      CTATGTAAACCAAATGGAAACCCATAACCTATATAAAGTAAAGCCACACAACATAAACAA 1016
consensus_4337#1      ------------------------------------------------------------
                                                                                  

consensus_4337#0      ATTGGAAGAAAGACACACAGAAACACAAGTAGGGNCTATAATAGAGTAACAAAGTCGAGC 1076
consensus_4337#1      ------------------------------------------------------------
                                                                                  

consensus_4337#0      CAATGTAGGACCGATCGATGGGAACATTTTCGAACGATCTTTTGTGTTACCATAGTGGGG 1136
consensus_4337#1      ------------------------------------------------------------
                                                                                  

consensus_4337#0      GAAAA 1141
consensus_4337#1      -----