cluster # 4339

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Anopheles gambiae
cluster # 4339 cluster # 4339 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4339#0 length = 619 sequences # 2

consensus_4339#1 length = 497 sequences # 1

consensusID : consensus_4339#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 619
fasta sequence

                              [CCGGGGAACCAACACGATCGGAGCAGCCAGGCGAACATGGAACCGGCAAACGTTTGTTGCAAAACGGCACAATTATTTCAGCAGTGGTTATTATTCCCTCAATCTGTTACATGACCGTTACGCTTGTGGCGCGAGTTTTGGAAAATGGGTAAACCTTCGCAACAATCATGCGAGCAGGAGCGCTAGCTAGCACCCGAAGGTAATGATGTGCCGAGAAAGATACGGGAGTTTGCAGCCGGTTTCCTAAGCAGCAGGAATGTGCTTTTGGCGCGGGAGTTACACGACCAACAGGCACATAGTTGGCACAGCATGAGGAATAATCGGTACCATCCCTACAACTAAGCCAACGGACGATTGACGAGTTTTCCCCTGGAACTGTCCAGTATGTGTGCCTGTGCTGTTCTTAACAAGATCGCCACTTTAGCTGTACATTACGTACACGCAAGCGAGATATGATGCGCGCGTATCCTGGGTTGTATTCCTCAAACGATCGAAGTGCCGGCTCCTTATGGAAGATGCATTACTTTGCAGGATAAAAACAGTGCATTGAAGATATCCTGCGAGATATACGTTTGCTAGAATCATATTTTGCTTGAAACATTAAAAAACGCATATTTTA]

[+] EMBL BM633460             [CCGGGGAACCAACACGATCGGAGCAGCCAGGCGAACATGGAACCGGCAAACGTTTGTTGCAAAACGGCACAATTATTTCAGCAGTGGTTATTATTCCCTCAATCTGTTACATGACCGTTACGCTTGTGGCGCGAGTTTTGGAAAATGGGTAAACCTTCGCAACAATCATGCGAGCAGGAGCGCTAGCTAGCACCCGAAGGTAATGATGTGCCGAGAAAGATACGGGAGTTTGCAGCCGGTTTCCTAAGCAGCAGGAATGTGCTTTTGGCGCGGGAGTTACACGACCAACAGGCACATAGTTGGCACAGCATGAGGAATAATCGGTACCATCCCTACAACTAAGCCAACGGACGATTGACGAGTTTTCCCCTGGAACTGTCCAGTATGTGTGCCTGTGCTGTTCTTAACAAGATCGCCACTTTAGCTGTACATTACGTACACGCAAGCGAGATATGATGCGCGCGTATCCTGGGTTGTATTCCTCAAACGATCGAAGTGCCGGCTCCTTATGGAAGATGCATTACTTTGCAGGATAAAAACAGTGCATTGAAGATATCCTGCGAGATATACGTTTGCTAGAATCAT                                  ]
[+] EMBL BX621256             [                                               AAACGTTTGTTGCAAAACGGCACAATTATTTCAGCAGTGGTTATTATTCCCTCAATCTGTTACATGACCGTTACGCTTGTGGCGCGAGTTTTGGAAAATGGGTAAACCTTCGCAACAATCATGCGACCAGGAGCGCTAGCTAGCACCTGAAAGTAATGATGTGCCGGGAAAGATACGGGAGTTTGCAGCCGGTTTCCTAAGCAGCAGGAATGTGCTTTTGGCGCGGGAGTTACACGACCAACAGGCACATAGTTGGCACAGCATGAGGAATAATCGGTACCATCCCTACAACTAAGCCAACGGACGATTGACGAGTTTTCCCCTGGAACTATCCATTATCTGTGCCAGTGC   TATTAACAAGATCGCCACTTTAGCTGTACATTACGTACACGCAAGCGAGATATGATGCGCGCGTATCCTGGGTTGTATTCCTCGAACGATCGAAGTGCCGGCTCCTTATGGAAGATGCATTACTTTGCAGGATAAAAACAGTGCATTGAAGATATCCTGCGAGATATACGTTTGCTAGAATCATATTTTGCTTGAAACATTAAAAAACGCATATTTTA]




>consensus_4339#0
CCGGGGAACCAACACGATCGGAGCAGCCAGGCGAACATGGAACCGGCAAACGTTTGTTGC
AAAACGGCACAATTATTTCAGCAGTGGTTATTATTCCCTCAATCTGTTACATGACCGTTA
CGCTTGTGGCGCGAGTTTTGGAAAATGGGTAAACCTTCGCAACAATCATGCGAGCAGGAG
CGCTAGCTAGCACCCGAAGGTAATGATGTGCCGAGAAAGATACGGGAGTTTGCAGCCGGT
TTCCTAAGCAGCAGGAATGTGCTTTTGGCGCGGGAGTTACACGACCAACAGGCACATAGT
TGGCACAGCATGAGGAATAATCGGTACCATCCCTACAACTAAGCCAACGGACGATTGACG
AGTTTTCCCCTGGAACTGTCCAGTATGTGTGCCTGTGCTGTTCTTAACAAGATCGCCACT
TTAGCTGTACATTACGTACACGCAAGCGAGATATGATGCGCGCGTATCCTGGGTTGTATT
CCTCAAACGATCGAAGTGCCGGCTCCTTATGGAAGATGCATTACTTTGCAGGATAAAAAC
AGTGCATTGAAGATATCCTGCGAGATATACGTTTGCTAGAATCATATTTTGCTTGAAACA
TTAAAAAACGCATATTTTA

consensusID : consensus_4339#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence

                              [CCGCCCACGCGTCCGCACGATCGGAGCAGCCAGGCGAACATGGAACCGGCAAACGTTTGTTGCAAAACGGCACAATTATTTCAGCAGTGGTTATTATTCCCTCAATCTGTTACATGACCGTTACGCTTGTGGCGCGAGTTTTGGAAAATGGGTAAACCTTCGCAACAATCATGCGAGCAGGAGCGCTAGCTAGCACCCGAAGGTAATGATGTGCCGAGAAAGATACGGGAGTTTGCAGCCGGTTTCCTAAGCAGCAGGAATGTGCTTTTGGCGCGGGAGTTACACGACCAACAGGCACATAGTTGGCACAGCATGAGGAATAATCGGTACCATCCCTACAACTAAGCCAACGGACGATTGACGAGTTTTCCCCTGGAACTGTCCAGTATGTGTGCCTGTGCTGTTCTTAACAAGATCGCCACTTTAGCTGTACATTACGTACACGCAAGCGAGATATGATGCGCGCGTATCCTGGGTTGTATTCCTCAAACGATCGA]

[+] EMBL BM649921             [CCGCCCACGCGTCCGCACGATCGGAGCAGCCAGGCGAACATGGAACCGGCAAACGTTTGTTGCAAAACGGCACAATTATTTCAGCAGTGGTTATTATTCCCTCAATCTGTTACATGACCGTTACGCTTGTGGCGCGAGTTTTGGAAAATGGGTAAACCTTCGCAACAATCATGCGAGCAGGAGCGCTAGCTAGCACCCGAAGGTAATGATGTGCCGAGAAAGATACGGGAGTTTGCAGCCGGTTTCCTAAGCAGCAGGAATGTGCTTTTGGCGCGGGAGTTACACGACCAACAGGCACATAGTTGGCACAGCATGAGGAATAATCGGTACCATCCCTACAACTAAGCCAACGGACGATTGACGAGTTTTCCCCTGGAACTGTCCAGTATGTGTGCCTGTGCTGTTCTTAACAAGATCGCCACTTTAGCTGTACATTACGTACACGCAAGCGAGATATGATGCGCGCGTATCCTGGGTTGTATTCCTCAAACGATCGA]




>consensus_4339#1
CCGCCCACGCGTCCGCACGATCGGAGCAGCCAGGCGAACATGGAACCGGCAAACGTTTGT
TGCAAAACGGCACAATTATTTCAGCAGTGGTTATTATTCCCTCAATCTGTTACATGACCG
TTACGCTTGTGGCGCGAGTTTTGGAAAATGGGTAAACCTTCGCAACAATCATGCGAGCAG
GAGCGCTAGCTAGCACCCGAAGGTAATGATGTGCCGAGAAAGATACGGGAGTTTGCAGCC
GGTTTCCTAAGCAGCAGGAATGTGCTTTTGGCGCGGGAGTTACACGACCAACAGGCACAT
AGTTGGCACAGCATGAGGAATAATCGGTACCATCCCTACAACTAAGCCAACGGACGATTG
ACGAGTTTTCCCCTGGAACTGTCCAGTATGTGTGCCTGTGCTGTTCTTAACAAGATCGCC
ACTTTAGCTGTACATTACGTACACGCAAGCGAGATATGATGCGCGCGTATCCTGGGTTGT
ATTCCTCAAACGATCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4339#0      ---CCGGGGAACCAACACGATCGGAGCAGCCAGGCGAACATGGAACCGGCAAACGTTTGT 57
consensus_4339#1      CCGCCCACGCGTCCGCACGATCGGAGCAGCCAGGCGAACATGGAACCGGCAAACGTTTGT 60
                         **   *   *  *********************************************

consensus_4339#0      TGCAAAACGGCACAATTATTTCAGCAGTGGTTATTATTCCCTCAATCTGTTACATGACCG 117
consensus_4339#1      TGCAAAACGGCACAATTATTTCAGCAGTGGTTATTATTCCCTCAATCTGTTACATGACCG 120
                      ************************************************************

consensus_4339#0      TTACGCTTGTGGCGCGAGTTTTGGAAAATGGGTAAACCTTCGCAACAATCATGCGAGCAG 177
consensus_4339#1      TTACGCTTGTGGCGCGAGTTTTGGAAAATGGGTAAACCTTCGCAACAATCATGCGAGCAG 180
                      ************************************************************

consensus_4339#0      GAGCGCTAGCTAGCACCCGAAGGTAATGATGTGCCGAGAAAGATACGGGAGTTTGCAGCC 237
consensus_4339#1      GAGCGCTAGCTAGCACCCGAAGGTAATGATGTGCCGAGAAAGATACGGGAGTTTGCAGCC 240
                      ************************************************************

consensus_4339#0      GGTTTCCTAAGCAGCAGGAATGTGCTTTTGGCGCGGGAGTTACACGACCAACAGGCACAT 297
consensus_4339#1      GGTTTCCTAAGCAGCAGGAATGTGCTTTTGGCGCGGGAGTTACACGACCAACAGGCACAT 300
                      ************************************************************

consensus_4339#0      AGTTGGCACAGCATGAGGAATAATCGGTACCATCCCTACAACTAAGCCAACGGACGATTG 357
consensus_4339#1      AGTTGGCACAGCATGAGGAATAATCGGTACCATCCCTACAACTAAGCCAACGGACGATTG 360
                      ************************************************************

consensus_4339#0      ACGAGTTTTCCCCTGGAACTGTCCAGTATGTGTGCCTGTGCTGTTCTTAACAAGATCGCC 417
consensus_4339#1      ACGAGTTTTCCCCTGGAACTGTCCAGTATGTGTGCCTGTGCTGTTCTTAACAAGATCGCC 420
                      ************************************************************

consensus_4339#0      ACTTTAGCTGTACATTACGTACACGCAAGCGAGATATGATGCGCGCGTATCCTGGGTTGT 477
consensus_4339#1      ACTTTAGCTGTACATTACGTACACGCAAGCGAGATATGATGCGCGCGTATCCTGGGTTGT 480
                      ************************************************************

consensus_4339#0      ATTCCTCAAACGATCGAAGTGCCGGCTCCTTATGGAAGATGCATTACTTTGCAGGATAAA 537
consensus_4339#1      ATTCCTCAAACGATCGA------------------------------------------- 497
                      *****************                                           

consensus_4339#0      AACAGTGCATTGAAGATATCCTGCGAGATATACGTTTGCTAGAATCATATTTTGCTTGAA 597
consensus_4339#1      ------------------------------------------------------------
                                                                                  

consensus_4339#0      ACATTAAAAAACGCATATTTTA 619
consensus_4339#1      ----------------------