cluster # 4343

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Anopheles gambiae
cluster # 4343 cluster # 4343 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4343#0 length = 789 sequences # 2

consensus_4343#1 length = 395 sequences # 1

consensusID : consensus_4343#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 789
fasta sequence

                              [TACTGTAGCTTAAACATTGTGTATTCTTTACGTAAACCAGCGGGAGCATTTGCGTCAGAAACACTAGTTTTTACTGATATTTTTTACGGACTGTTACTTAAACGTTATGATACATGTAATGAATGAATTATATGGAGCGCGCGATACACGGCAGTGAAGGAGTACAACCGATCTTAAATCACTAATCGCAACAGCAAGCAAATCTGTACGAGATTTATATTCGAATTCAATTCATAACTAGCCAAATTGTTACGAAAACTCCCACTCGAAGCGATTACACTAAACACTTACTTGCGTTACGGATGCTACAGTGTAGACAGGGAATTAAGACCCTGGTGTGCAGGTAGAATGGCAATACAGAAACAGCAGTGTGTACGAACAAGAACCAATAGTAATTGCAATGTTGAAAATGGATTAAAAAAACATTATAACAAACCATCACACGACACACGACAGGACACACCCGTTACCGCAATGGTGCATGTTTAGTTTTGCAAAGTACGTTTTGTAATTCTATCAATTCACAACCAATTGAAACACATAAAGACACAGATAAAGGGTTGAAATGAAAAAGCGAGTGAAAACGAATGAAAAGGCAGGAACACATACAAACAAAGGCACACAACACGGCATACATAGCATACAAACGAAAGAAGAAAAACATCTCTAGCAAGACGACGAATACGGCAGTACGTGAGAAGGCGCGAAATAGTAGTGTGTGAGACAGACAGTGGATAGTCAAATTGCGAGCGAAGGATGATTGAGCGGGTGTAAAACTCTGAAAATACG]

[+] EMBL BX608892             [TACTGTAGCTTAAACATTGTGTATTCTTTACGTAAACCAGCGGGAGCATTTGCGTCAGAAACACTAGTTTTTACTGATATTTTTTACGGACTGTTACTTAAACGTTATGATACATGTAATGAATGAATTATATGGAGCGCGCGATACACGGCAGTGAAGGAGTACAACCGATCTTAAATCACTAATCGCAACAGCAAGCAAATCTGTACGAGATTTATATTCGAATTCAATTCATAACTAGCCAAATTGTTACGAAAACTCCCACTCGAAGCGATTACACTAAACACTTACTTGCGTTACGGATGCTACAGTGTAGACAGGGAATTAAGACCCTGGTGTGCAGGTAGAATGGCAATACAGAAACAGCAGTGTGTACGAACAAGAACCAATAGTAATTGCAATGTTGAAAATGGATTAAAAAAACATTATAACAAACCATCACACGACACACGACAGGACACACCCGTTACCGCAATGGTGCATGTTTAGTTTTGCAAAGTACGTTTTGTAATTCTATCAATTCACAACCAATTGAAACACATAAAGACACAGATAAAGGGTTGAAATGAAAAAGCGAGTGAAAACGAATGAAAAGGCAGGAACACATACAAACAAAGGCACACAACACGGCATACATAGCATACAAACGAAAGAAGAAAAACATCTCTAGCAAGACGACGAATACGGCAGTACGTGAGAAGGCGCGAAATAGTAGTGTGTGAGACAGACAGTGGATAGTCAAATTGCGAGCGAAGGATGATTGAGCGGGTGTAAAACTCTGAAAATACG]
[+] EMBL BX615797             [                                                                                                                                                             AGGAGTACAACCGATCTTAAATCACTAATCGCAACAGCAAGCTAATCTGTACGAGATTTATATTCGAATTCAATTCATAACTAGCCAAATTGTTACGAAAACTCCCACTCGAAGCGATTACACTAAACACTTACTTGCGTTACGGATGCTACAGTGTAGACAGGGAATTAAGACCCTGGTGTGCAGGTAGAATGGCAATACAGAAACAGCAGTGTGTACGAACAAGAACCAATAGTAATTGCAATGTTGAAAATGGATTAAAAAAACATTATAACAAACCATCACACGACACACGACAGGACACACCCGTTACCGCAATGGTGCATGTTTAGTTTTGCAAAGTACGTTTTGTAATTCTATCAATTCACAACCAATTGAAACACATAAAGACACAGATAAAGGGTTGAAATGAAAAAGCGAGTGAAAACGAATGAAAAGGCAGGAACACATACAAACAAAGGCACACAACACGGCATACATAGCATAC                                                                                                                                                 ]




>consensus_4343#0
TACTGTAGCTTAAACATTGTGTATTCTTTACGTAAACCAGCGGGAGCATTTGCGTCAGAA
ACACTAGTTTTTACTGATATTTTTTACGGACTGTTACTTAAACGTTATGATACATGTAAT
GAATGAATTATATGGAGCGCGCGATACACGGCAGTGAAGGAGTACAACCGATCTTAAATC
ACTAATCGCAACAGCAAGCAAATCTGTACGAGATTTATATTCGAATTCAATTCATAACTA
GCCAAATTGTTACGAAAACTCCCACTCGAAGCGATTACACTAAACACTTACTTGCGTTAC
GGATGCTACAGTGTAGACAGGGAATTAAGACCCTGGTGTGCAGGTAGAATGGCAATACAG
AAACAGCAGTGTGTACGAACAAGAACCAATAGTAATTGCAATGTTGAAAATGGATTAAAA
AAACATTATAACAAACCATCACACGACACACGACAGGACACACCCGTTACCGCAATGGTG
CATGTTTAGTTTTGCAAAGTACGTTTTGTAATTCTATCAATTCACAACCAATTGAAACAC
ATAAAGACACAGATAAAGGGTTGAAATGAAAAAGCGAGTGAAAACGAATGAAAAGGCAGG
AACACATACAAACAAAGGCACACAACACGGCATACATAGCATACAAACGAAAGAAGAAAA
ACATCTCTAGCAAGACGACGAATACGGCAGTACGTGAGAAGGCGCGAAATAGTAGTGTGT
GAGACAGACAGTGGATAGTCAAATTGCGAGCGAAGGATGATTGAGCGGGTGTAAAACTCT
GAAAATACG

consensusID : consensus_4343#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [CAAGAATNCCCGAGGATATATGGAGCGCGCGATACACGGCAGTGAAGGAGTACAACCGATCTTAAATCACTAATCGCAACAGGCAAAGCAAATCTGTACGAGATTTATATTCGAATTCAATTCATAACTAGCCAAATTGTTACGAAAACTCCCACTCGAAGCGATTACACTAAACACTTACTTGCGTTACGGATGCTACAGTGTAGACAGGGAATTAAGACCCCTGGTGGTGCAGGGTAGAACTGGCAACTACACGAACACAGCAGTGTGTACGAACAAGAACCAAATAGCTAATTGCGAACTGTTGAACAACTGGACTTANACCAAAACATTATAACAAACCATCACACGACACACGACAGGACACACCCGNTTACCGCAATGGTGCATGTTTA]

[+] EMBL AL930539             [CAAGAATNCCCGAGGATATATGGAGCGCGCGATACACGGCAGTGAAGGAGTACAACCGATCTTAAATCACTAATCGCAACAGGCAAAGCAAATCTGTACGAGATTTATATTCGAATTCAATTCATAACTAGCCAAATTGTTACGAAAACTCCCACTCGAAGCGATTACACTAAACACTTACTTGCGTTACGGATGCTACAGTGTAGACAGGGAATTAAGACCCCTGGTGGTGCAGGGTAGAACTGGCAACTACACGAACACAGCAGTGTGTACGAACAAGAACCAAATAGCTAATTGCGAACTGTTGAACAACTGGACTTANACCAAAACATTATAACAAACCATCACACGACACACGACAGGACACACCCGNTTACCGCAATGGTGCATGTTTA]




>consensus_4343#1
CAAGAATNCCCGAGGATATATGGAGCGCGCGATACACGGCAGTGAAGGAGTACAACCGAT
CTTAAATCACTAATCGCAACAGGCAAAGCAAATCTGTACGAGATTTATATTCGAATTCAA
TTCATAACTAGCCAAATTGTTACGAAAACTCCCACTCGAAGCGATTACACTAAACACTTA
CTTGCGTTACGGATGCTACAGTGTAGACAGGGAATTAAGACCCCTGGTGGTGCAGGGTAG
AACTGGCAACTACACGAACACAGCAGTGTGTACGAACAAGAACCAAATAGCTAATTGCGA
ACTGTTGAACAACTGGACTTANACCAAAACATTATAACAAACCATCACACGACACACGAC
AGGACACACCCGNTTACCGCAATGGTGCATGTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4343#0      TACTGTAGCTTAAACATTGTGTATTCTTTACGTAAACCAGCGGGAGCATTTGCGTCAGAA 60
consensus_4343#1      ------------------------------------------------------------
                                                                                  

consensus_4343#0      ACACTAGTTTTTACTGATATTTTTTACGGACTGTTACTTAAACGTTATGATACATGTAAT 120
consensus_4343#1      ----------------------------------------------------CAAGAATN 8
                                                                          ** * *  

consensus_4343#0      GAATGAATTATATGGAGCGCGCGATACACGGCAGTGAAGGAGTACAACCGATCTTAAATC 180
consensus_4343#1      CCCGAGGATATATGGAGCGCGCGATACACGGCAGTGAAGGAGTACAACCGATCTTAAATC 68
                              ****************************************************

consensus_4343#0      ACTAATCGCAACAGC--AAGCAAATCTGTACGAGATTTATATTCGAATTCAATTCATAAC 238
consensus_4343#1      ACTAATCGCAACAGGCAAAGCAAATCTGTACGAGATTTATATTCGAATTCAATTCATAAC 128
                      **************   *******************************************

consensus_4343#0      TAGCCAAATTGTTACGAAAACTCCCACTCGAAGCGATTACACTAAACACTTACTTGCGTT 298
consensus_4343#1      TAGCCAAATTGTTACGAAAACTCCCACTCGAAGCGATTACACTAAACACTTACTTGCGTT 188
                      ************************************************************

consensus_4343#0      ACGGATGCTACAGTGTAGACAGGGAATTAAGACCC-TGGTG-TGCAGG-TAGAA-TGGCA 354
consensus_4343#1      ACGGATGCTACAGTGTAGACAGGGAATTAAGACCCCTGGTGGTGCAGGGTAGAACTGGCA 248
                      *********************************** ***** ****** ***** *****

consensus_4343#0      AT---ACAGAAACAGCAGTGTGTACGAACAAGAACCAA-TAG-TAATTGCAA--TGTTGA 407
consensus_4343#1      ACTACACGAACACAGCAGTGTGTACGAACAAGAACCAAATAGCTAATTGCGAACTGTTGA 308
                      *    **  * *************************** *** ******* *  ******

consensus_4343#0      AAA--TGGATTAAAA---AAACATTATAACAAACCATCACACGACACACGACAGGACACA 462
consensus_4343#1      ACAACTGGACTTANACCAAAACATTATAACAAACCATCACACGACACACGACAGGACACA 368
                      * *  **** * * *   ******************************************

consensus_4343#0      CCCGTT-ACCGCAATGGTGCATGTTTAGTTTTGCAAAGTACGTTTTGTAATTCTATCAAT 521
consensus_4343#1      CCCGNTTACCGCAATGGTGCATGTTTA--------------------------------- 395
                      **** * ********************                                 

consensus_4343#0      TCACAACCAATTGAAACACATAAAGACACAGATAAAGGGTTGAAATGAAAAAGCGAGTGA 581
consensus_4343#1      ------------------------------------------------------------
                                                                                  

consensus_4343#0      AAACGAATGAAAAGGCAGGAACACATACAAACAAAGGCACACAACACGGCATACATAGCA 641
consensus_4343#1      ------------------------------------------------------------
                                                                                  

consensus_4343#0      TACAAACGAAAGAAGAAAAACATCTCTAGCAAGACGACGAATACGGCAGTACGTGAGAAG 701
consensus_4343#1      ------------------------------------------------------------
                                                                                  

consensus_4343#0      GCGCGAAATAGTAGTGTGTGAGACAGACAGTGGATAGTCAAATTGCGAGCGAAGGATGAT 761
consensus_4343#1      ------------------------------------------------------------
                                                                                  

consensus_4343#0      TGAGCGGGTGTAAAACTCTGAAAATACG 789
consensus_4343#1      ----------------------------