These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4343#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 789 fasta sequence [TACTGTAGCTTAAACATTGTGTATTCTTTACGTAAACCAGCGGGAGCATTTGCGTCAGAAACACTAGTTTTTACTGATATTTTTTACGGACTGTTACTTAAACGTTATGATACATGTAATGAATGAATTATATGGAGCGCGCGATACACGGCAGTGAAGGAGTACAACCGATCTTAAATCACTAATCGCAACAGCAAGCAAATCTGTACGAGATTTATATTCGAATTCAATTCATAACTAGCCAAATTGTTACGAAAACTCCCACTCGAAGCGATTACACTAAACACTTACTTGCGTTACGGATGCTACAGTGTAGACAGGGAATTAAGACCCTGGTGTGCAGGTAGAATGGCAATACAGAAACAGCAGTGTGTACGAACAAGAACCAATAGTAATTGCAATGTTGAAAATGGATTAAAAAAACATTATAACAAACCATCACACGACACACGACAGGACACACCCGTTACCGCAATGGTGCATGTTTAGTTTTGCAAAGTACGTTTTGTAATTCTATCAATTCACAACCAATTGAAACACATAAAGACACAGATAAAGGGTTGAAATGAAAAAGCGAGTGAAAACGAATGAAAAGGCAGGAACACATACAAACAAAGGCACACAACACGGCATACATAGCATACAAACGAAAGAAGAAAAACATCTCTAGCAAGACGACGAATACGGCAGTACGTGAGAAGGCGCGAAATAGTAGTGTGTGAGACAGACAGTGGATAGTCAAATTGCGAGCGAAGGATGATTGAGCGGGTGTAAAACTCTGAAAATACG] [+] EMBL BX608892 [TACTGTAGCTTAAACATTGTGTATTCTTTACGTAAACCAGCGGGAGCATTTGCGTCAGAAACACTAGTTTTTACTGATATTTTTTACGGACTGTTACTTAAACGTTATGATACATGTAATGAATGAATTATATGGAGCGCGCGATACACGGCAGTGAAGGAGTACAACCGATCTTAAATCACTAATCGCAACAGCAAGCAAATCTGTACGAGATTTATATTCGAATTCAATTCATAACTAGCCAAATTGTTACGAAAACTCCCACTCGAAGCGATTACACTAAACACTTACTTGCGTTACGGATGCTACAGTGTAGACAGGGAATTAAGACCCTGGTGTGCAGGTAGAATGGCAATACAGAAACAGCAGTGTGTACGAACAAGAACCAATAGTAATTGCAATGTTGAAAATGGATTAAAAAAACATTATAACAAACCATCACACGACACACGACAGGACACACCCGTTACCGCAATGGTGCATGTTTAGTTTTGCAAAGTACGTTTTGTAATTCTATCAATTCACAACCAATTGAAACACATAAAGACACAGATAAAGGGTTGAAATGAAAAAGCGAGTGAAAACGAATGAAAAGGCAGGAACACATACAAACAAAGGCACACAACACGGCATACATAGCATACAAACGAAAGAAGAAAAACATCTCTAGCAAGACGACGAATACGGCAGTACGTGAGAAGGCGCGAAATAGTAGTGTGTGAGACAGACAGTGGATAGTCAAATTGCGAGCGAAGGATGATTGAGCGGGTGTAAAACTCTGAAAATACG] [+] EMBL BX615797 [ AGGAGTACAACCGATCTTAAATCACTAATCGCAACAGCAAGCTAATCTGTACGAGATTTATATTCGAATTCAATTCATAACTAGCCAAATTGTTACGAAAACTCCCACTCGAAGCGATTACACTAAACACTTACTTGCGTTACGGATGCTACAGTGTAGACAGGGAATTAAGACCCTGGTGTGCAGGTAGAATGGCAATACAGAAACAGCAGTGTGTACGAACAAGAACCAATAGTAATTGCAATGTTGAAAATGGATTAAAAAAACATTATAACAAACCATCACACGACACACGACAGGACACACCCGTTACCGCAATGGTGCATGTTTAGTTTTGCAAAGTACGTTTTGTAATTCTATCAATTCACAACCAATTGAAACACATAAAGACACAGATAAAGGGTTGAAATGAAAAAGCGAGTGAAAACGAATGAAAAGGCAGGAACACATACAAACAAAGGCACACAACACGGCATACATAGCATAC ] consensusID : consensus_4343#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [CAAGAATNCCCGAGGATATATGGAGCGCGCGATACACGGCAGTGAAGGAGTACAACCGATCTTAAATCACTAATCGCAACAGGCAAAGCAAATCTGTACGAGATTTATATTCGAATTCAATTCATAACTAGCCAAATTGTTACGAAAACTCCCACTCGAAGCGATTACACTAAACACTTACTTGCGTTACGGATGCTACAGTGTAGACAGGGAATTAAGACCCCTGGTGGTGCAGGGTAGAACTGGCAACTACACGAACACAGCAGTGTGTACGAACAAGAACCAAATAGCTAATTGCGAACTGTTGAACAACTGGACTTANACCAAAACATTATAACAAACCATCACACGACACACGACAGGACACACCCGNTTACCGCAATGGTGCATGTTTA] [+] EMBL AL930539 [CAAGAATNCCCGAGGATATATGGAGCGCGCGATACACGGCAGTGAAGGAGTACAACCGATCTTAAATCACTAATCGCAACAGGCAAAGCAAATCTGTACGAGATTTATATTCGAATTCAATTCATAACTAGCCAAATTGTTACGAAAACTCCCACTCGAAGCGATTACACTAAACACTTACTTGCGTTACGGATGCTACAGTGTAGACAGGGAATTAAGACCCCTGGTGGTGCAGGGTAGAACTGGCAACTACACGAACACAGCAGTGTGTACGAACAAGAACCAAATAGCTAATTGCGAACTGTTGAACAACTGGACTTANACCAAAACATTATAACAAACCATCACACGACACACGACAGGACACACCCGNTTACCGCAATGGTGCATGTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4343#0 TACTGTAGCTTAAACATTGTGTATTCTTTACGTAAACCAGCGGGAGCATTTGCGTCAGAA 60 consensus_4343#1 ------------------------------------------------------------ consensus_4343#0 ACACTAGTTTTTACTGATATTTTTTACGGACTGTTACTTAAACGTTATGATACATGTAAT 120 consensus_4343#1 ----------------------------------------------------CAAGAATN 8 ** * * consensus_4343#0 GAATGAATTATATGGAGCGCGCGATACACGGCAGTGAAGGAGTACAACCGATCTTAAATC 180 consensus_4343#1 CCCGAGGATATATGGAGCGCGCGATACACGGCAGTGAAGGAGTACAACCGATCTTAAATC 68 **************************************************** consensus_4343#0 ACTAATCGCAACAGC--AAGCAAATCTGTACGAGATTTATATTCGAATTCAATTCATAAC 238 consensus_4343#1 ACTAATCGCAACAGGCAAAGCAAATCTGTACGAGATTTATATTCGAATTCAATTCATAAC 128 ************** ******************************************* consensus_4343#0 TAGCCAAATTGTTACGAAAACTCCCACTCGAAGCGATTACACTAAACACTTACTTGCGTT 298 consensus_4343#1 TAGCCAAATTGTTACGAAAACTCCCACTCGAAGCGATTACACTAAACACTTACTTGCGTT 188 ************************************************************ consensus_4343#0 ACGGATGCTACAGTGTAGACAGGGAATTAAGACCC-TGGTG-TGCAGG-TAGAA-TGGCA 354 consensus_4343#1 ACGGATGCTACAGTGTAGACAGGGAATTAAGACCCCTGGTGGTGCAGGGTAGAACTGGCA 248 *********************************** ***** ****** ***** ***** consensus_4343#0 AT---ACAGAAACAGCAGTGTGTACGAACAAGAACCAA-TAG-TAATTGCAA--TGTTGA 407 consensus_4343#1 ACTACACGAACACAGCAGTGTGTACGAACAAGAACCAAATAGCTAATTGCGAACTGTTGA 308 * ** * *************************** *** ******* * ****** consensus_4343#0 AAA--TGGATTAAAA---AAACATTATAACAAACCATCACACGACACACGACAGGACACA 462 consensus_4343#1 ACAACTGGACTTANACCAAAACATTATAACAAACCATCACACGACACACGACAGGACACA 368 * * **** * * * ****************************************** consensus_4343#0 CCCGTT-ACCGCAATGGTGCATGTTTAGTTTTGCAAAGTACGTTTTGTAATTCTATCAAT 521 consensus_4343#1 CCCGNTTACCGCAATGGTGCATGTTTA--------------------------------- 395 **** * ******************** consensus_4343#0 TCACAACCAATTGAAACACATAAAGACACAGATAAAGGGTTGAAATGAAAAAGCGAGTGA 581 consensus_4343#1 ------------------------------------------------------------ consensus_4343#0 AAACGAATGAAAAGGCAGGAACACATACAAACAAAGGCACACAACACGGCATACATAGCA 641 consensus_4343#1 ------------------------------------------------------------ consensus_4343#0 TACAAACGAAAGAAGAAAAACATCTCTAGCAAGACGACGAATACGGCAGTACGTGAGAAG 701 consensus_4343#1 ------------------------------------------------------------ consensus_4343#0 GCGCGAAATAGTAGTGTGTGAGACAGACAGTGGATAGTCAAATTGCGAGCGAAGGATGAT 761 consensus_4343#1 ------------------------------------------------------------ consensus_4343#0 TGAGCGGGTGTAAAACTCTGAAAATACG 789 consensus_4343#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||