cluster # 4348

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4348 cluster # 4348 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4348#0 length = 772 sequences # 2

consensus_4348#1 length = 226 sequences # 1

consensusID : consensus_4348#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 772
fasta sequence

                              [CCGGTCCACTTTCTGGGAAAAGGGAAAGTAGTTTGTCGCTGCATTACACCCGAGGATTAATTTAAAGCGCATCGCCCCGGGATGGAGGTGGATGATACGAACGAGTCGAAGCGCAAAATACCAGCCTACTACTACTTGCAGCCATCGAAGAATGGAGACGAAGAAGCGGAGGAGGAACTGTACGATTCCAACGGGACACACATCACCCCAGAGCAGCCGGTCAGTGCCATAACGAACAGCAGTAGCAGTGGAATCGGCTTCGTCATCAGCTCGGTCGCAACTGTGGACCAAAAGTTTCTCGAAGATCTCGCCCAAATGGAGCTGCAGGCCCGCTCACCCGAGCTGGAGGAGATTGGGCCGGCCGATGAGCTGCCGGAAATGTCCGCCACACCCGGGGCAGGGCCCGGCAGCTTTGGCAATCCGCTCACCTCAACGACGTGCACGCTGTGCGGCAAAAGCTTCAGCGAACCGTTTGGTCTCCGCCAGCATATGCGCATAATGCACGCCGACACGAAACCATTCAAATGTCCGGAGTGTCGCAAACGGTTCGCCAAAGAGCAGGCCATGCTGATACACCTGCGCGTGCACATCAGCAATCGGCCGTTCATGTGTATCGTGTGCTACAAAACGTTCACCCGGGCCACGGCACTGAACGGTCACCTGTCGTCGCATTCGCACGATTCGCTCAAATGCTTCGCCTGCCTGGAGATGCTGCCGAACGTGCAGAAGTACGCGCAACACATCGAGCTGAATCATCCCGAGTTTCCGGAGG]

[+] EMBL BM648629             [CCGGTCCACTTTCTGGGAAAAGGGAAAGTAGTTTGTCGCTGCATTACACCCGAGGATTAATTTAAAGCGCATCGCCCCGGGATGGAGGTGGATGATACGAACGAGTCGAAGCGCAAAATACCAGCCTACTACTACTTGCAGCCATCGAAGAATGGAGACGAAGAAGCGGAGGAGGAACTGTACGATTCCAACGGGACACACATCACCCCAGAGCAGCCGGTCAGTGCCATAACGAACAGCAGTAGCAGTGGAATCGGCTTCGTCATCAGCTCGGTCGCAACTGTGGACCAAAAGTTTCTCGAAGATCTCGCCCAAATGGAGCTGCAGGCCCGCTCACCCGAGCTGGAGGAGATTGGGCCGGCCGATGAGCTGCCGGAAATGTCCGCCACACCCGGGGCAGGGCCCGGCAGCTTTGGCAATCCGCTCACCTCAACGACGTGCACGCTGTGCGGCAAAAGCTTCAGCGAACCGTTTGGTCTCCGCCAGCATATGCGCATAATGCACGCCGACACGAAACCATTCAAATGTCCGGAGTGTCGCAAACGGTTCGCCAAAGAGCAGGCCATGCTGATACACCTGCGCGTGCACATCAGCAATCGGCCGTTCATGTGTATCGTGTGCTACAAAACGTTCACCCGGGCCACGGCACTGAACGGTCACCTGTCGTCGCATTCGCACGATTCGCTCAAATGCTTC                                                                            ]
[-] EMBL CNS09C90             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CAATCGGCCGTTCATGTGTATCGTGTGCTACAAAACGTTCACCCGGGCCACGGCACTGAACGGTCACCTGTCGTCGCATTCGCACGATTCGCTCAAATG TTCGCCTGCCTGGAGATGCTGCCGAACGTGCAGAAGTACGCGCAACACATCGAGCTGAATCATCCCGAGTTTCCGGAGG]




>consensus_4348#0
CCGGTCCACTTTCTGGGAAAAGGGAAAGTAGTTTGTCGCTGCATTACACCCGAGGATTAA
TTTAAAGCGCATCGCCCCGGGATGGAGGTGGATGATACGAACGAGTCGAAGCGCAAAATA
CCAGCCTACTACTACTTGCAGCCATCGAAGAATGGAGACGAAGAAGCGGAGGAGGAACTG
TACGATTCCAACGGGACACACATCACCCCAGAGCAGCCGGTCAGTGCCATAACGAACAGC
AGTAGCAGTGGAATCGGCTTCGTCATCAGCTCGGTCGCAACTGTGGACCAAAAGTTTCTC
GAAGATCTCGCCCAAATGGAGCTGCAGGCCCGCTCACCCGAGCTGGAGGAGATTGGGCCG
GCCGATGAGCTGCCGGAAATGTCCGCCACACCCGGGGCAGGGCCCGGCAGCTTTGGCAAT
CCGCTCACCTCAACGACGTGCACGCTGTGCGGCAAAAGCTTCAGCGAACCGTTTGGTCTC
CGCCAGCATATGCGCATAATGCACGCCGACACGAAACCATTCAAATGTCCGGAGTGTCGC
AAACGGTTCGCCAAAGAGCAGGCCATGCTGATACACCTGCGCGTGCACATCAGCAATCGG
CCGTTCATGTGTATCGTGTGCTACAAAACGTTCACCCGGGCCACGGCACTGAACGGTCAC
CTGTCGTCGCATTCGCACGATTCGCTCAAATGCTTCGCCTGCCTGGAGATGCTGCCGAAC
GTGCAGAAGTACGCGCAACACATCGAGCTGAATCATCCCGAGTTTCCGGAGG

consensusID : consensus_4348#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 226
fasta sequence

                              [GGATGGAGGTGGATGATACGAACGAGTCGAAGCGCAAAATACCAGCCTACTACTACTTGCAGCCATCGAAGAATGGAGACGAAGAAGCGGAGGAGGAACTGTACGATTCCAACGGGACACACATCACCTCCGACTACCTGAACGATGTCGTGGCCGAAACCATGTCGGACCGGTACACGGTCGTGCAGGACTCCCCCTCCGACAAAGGCCCACACTACAAGTGTAA]

[+] EMBL CNS09C8Z             [GGATGGAGGTGGATGATACGAACGAGTCGAAGCGCAAAATACCAGCCTACTACTACTTGCAGCCATCGAAGAATGGAGACGAAGAAGCGGAGGAGGAACTGTACGATTCCAACGGGACACACATCACCTCCGACTACCTGAACGATGTCGTGGCCGAAACCATGTCGGACCGGTACACGGTCGTGCAGGACTCCCCCTCCGACAAAGGCCCACACTACAAGTGTAA]




>consensus_4348#1
GGATGGAGGTGGATGATACGAACGAGTCGAAGCGCAAAATACCAGCCTACTACTACTTGC
AGCCATCGAAGAATGGAGACGAAGAAGCGGAGGAGGAACTGTACGATTCCAACGGGACAC
ACATCACCTCCGACTACCTGAACGATGTCGTGGCCGAAACCATGTCGGACCGGTACACGG
TCGTGCAGGACTCCCCCTCCGACAAAGGCCCACACTACAAGTGTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4348#0      CCGGTCCACTTTCTGGGAAAAGGGAAAGTAGTTTGTCGCTGCATTACACCCGAGGATTAA 60
consensus_4348#1      ------------------------------------------------------------
                                                                                  

consensus_4348#0      TTTAAAGCGCATCGCCCCGGGATGGAGGTGGATGATACGAACGAGTCGAAGCGCAAAATA 120
consensus_4348#1      -------------------GGATGGAGGTGGATGATACGAACGAGTCGAAGCGCAAAATA 41
                                         *****************************************

consensus_4348#0      CCAGCCTACTACTACTTGCAGCCATCGAAGAATGGAGACGAAGAAGCGGAGGAGGAACTG 180
consensus_4348#1      CCAGCCTACTACTACTTGCAGCCATCGAAGAATGGAGACGAAGAAGCGGAGGAGGAACTG 101
                      ************************************************************

consensus_4348#0      TACGATTCCAACGGGACACACATCACCCCAGAGCAGCCGGTCAGTGCCATAACGAACAGC 240
consensus_4348#1      TACGATTCCAACGGGACACACATCACCTCCGACTACCTGAACGATGTCGTGGCCGAAACC 161
                      *************************** * **  * * *  *  ** * *  *  * * *

consensus_4348#0      AGTAGCAGTGGAATCGGCTTCGTCATCAGCTCGGTCGCAACTGTGGACCAAAAGTTTCTC 300
consensus_4348#1      AT-----GTCGGACCGG-TACACGGTCGTGCAGGACTCCCCCTCCGACAAAGGCCCACAC 215
                      *      ** * * *** * *    **     ** * *  *    *** **      * *

consensus_4348#0      GAAGATCTCGCCCAAATGGAGCTGCAGGCCCGCTCACCCGAGCTGGAGGAGATTGGGCCG 360
consensus_4348#1      TACAAGTGTAA------------------------------------------------- 226
                       *  *                                                       

consensus_4348#0      GCCGATGAGCTGCCGGAAATGTCCGCCACACCCGGGGCAGGGCCCGGCAGCTTTGGCAAT 420
consensus_4348#1      ------------------------------------------------------------
                                                                                  

consensus_4348#0      CCGCTCACCTCAACGACGTGCACGCTGTGCGGCAAAAGCTTCAGCGAACCGTTTGGTCTC 480
consensus_4348#1      ------------------------------------------------------------
                                                                                  

consensus_4348#0      CGCCAGCATATGCGCATAATGCACGCCGACACGAAACCATTCAAATGTCCGGAGTGTCGC 540
consensus_4348#1      ------------------------------------------------------------
                                                                                  

consensus_4348#0      AAACGGTTCGCCAAAGAGCAGGCCATGCTGATACACCTGCGCGTGCACATCAGCAATCGG 600
consensus_4348#1      ------------------------------------------------------------
                                                                                  

consensus_4348#0      CCGTTCATGTGTATCGTGTGCTACAAAACGTTCACCCGGGCCACGGCACTGAACGGTCAC 660
consensus_4348#1      ------------------------------------------------------------
                                                                                  

consensus_4348#0      CTGTCGTCGCATTCGCACGATTCGCTCAAATGCTTCGCCTGCCTGGAGATGCTGCCGAAC 720
consensus_4348#1      ------------------------------------------------------------
                                                                                  

consensus_4348#0      GTGCAGAAGTACGCGCAACACATCGAGCTGAATCATCCCGAGTTTCCGGAGG 772
consensus_4348#1      ----------------------------------------------------