These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4349#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 709 fasta sequence [CCGATCGTATAATCCAAAGCAGCAACCGCAAAACACTCGAAAATGGTTCTTTGTATGTACTTTCTGAATAACAGTTGCCGATTTGGCTCCCGATGCAACAACGAGCACATCGACATTGGGTCGATTGTAAAAACTGAAGTGGACGTGTCGCTGAAAGGCAACCAATGGCCGCTATCGTGTTTCGGACCGTTCAAGGAGCGAAACTGCATACCAAGCTTTATAGAAGATCTCAGCTTTGAAGAGATCCGGATGATGTATCTGGAGGCCAAAATGCAAAACAACATCCCAGCGCACCAGATGCAGCTGGCGCAGATGATCAATGACGCCAAAACAAAGATGCAATGTCTCACTACAATGAACAGAGACATTCTGAACACGTTGGTGGAAATTTACAACCAGCAGGAAAGCAGCGCCAAACCGACCAACGCTCCATTGAAACACGTTTGCATCGATTGGAT-CGGGTGGAAGTAATGCTCCGGCGTCCGGCATATTTGGCAGTGGCACTAGTAGCAATGCGTTCGGATCTGGATTCGGATCCAGCGCTGCCATCGGTGGTAGTAACGCTGGCACTGCCGGCAGTATATTCAGGCAGCGGTTCCATCACCGGCCAAGCGTCACAATCAGCTGGCAACATCTTTGGCACAGCTGCCTCCAGCACCGGCAATATATTTGCCAAACCTGCACAGCAACCTGCCGCTGGCAAATATCT] [+] EMBL BM604051 [CCGATCGTATAATCCAAAGCAGCAACCGCAAAACACTCGAAAATGGTTCTTTGTATGTACTTTCTGAATAACAGTTGCCGATTTGGCTCCCGATGCAACAACGAGCACATCGACATTGGGTCGATTGTAAAAACTGAAGTGGACGTGTCGCTGAAAGGCAACCAATGGCCGCTATCGTGTTTCGGACCGTTCAAGGAGCGAAACTGCATACCAAGCTTTATAGAAGATCTCAGCTTTGAAGAGATCCGGATGATGTATCTGGAGGCCAAAATGCAAAACAACATCCCAGCGCACCAGATGCAGCTGGCGCAGATGATCAATGACGCCAAAACAAAGATGCAATGTCTCACTACAATGAACAGAGACATTCTGAACACGTTGGTGGAAATTTACAACCAGCAGGAAAGCAGCGCCAAACCGACCAACGCTCCATTGAAACACGTTTGCATCGATTGGAT CGGGTGGAAGTAATGCTCCGGCGTCCGGCATATTTGGCA ] [+] EMBL BM592099 [ ccgGCAGCAACCGCAAAACACTCGAAAATGGTTCTTTGTATGTACTTTCTGAATAACAGTTGCCGATTTGGCTCCCGATGCAACAACGAGCACATCGACATTGGGTCGATTGTAAAAACTGAAGTGGACGTGTCGCTGAAAGGCAACCAATGGCCACTGTCGTGTTTCGGACCGTTCAAGGAGCGAAACTGCATACCAAGCTTTATAGAAGATCTCAGCTTCGAAGAGATCCGGATGATGTATCTGGAGGCCAAAATGCAAAACAACATCCCAGCGCACCAGATGCAGCTGGCGCAGATGATCAATGACGCCAAAACAAAGATGCAATGTCTCACTACAATGAACAGAGACATTCTGAACACGTTGGTGGAAATTTACAACCAGCAGGAAAGCAGCGCCAAACCGACCAACGCTCCATTG AACACGTTTGCATCGATTGGATCCGGGTGGAAGTAATGCTCCGGCGTCCGGCATATTTGGCAGTGGCACTAGTAGCAATGCGTTCGGATCTGGATTCGGATCCAGCGCTGCCATCGGTGGTAGTAACGCTGGCACTGCCGGCAGTATATTCAGGCAGCGGTTCCATCACCGGCCAAGCGTCACAATCAGCTGGCAACATCTTTGGCACAGCTGCCTCCAGCACCGGCAATATATTTGCCAAACCTGCACAGCAACCTGCCGCTGGCAAATATCT] consensusID : consensus_4349#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [CAAAACATAANNTGCAATGTCTCACTACAATGAACAGAGACATTCTGAACACGTTGGTGGAAATTTACAACCAGCAGGNNAAGCAGCGCCAAACCGACCAACGCTCCATTGAACACGTTCTGCATCNATNGGATCGGGTGGAAGTAATGCTCCGGCGTCCGGCATATTTGGCAGTGGCACTAGTAGCAATGCGTTCGGATCTGGATTCGGATCCAGCGCTGCCATCGGTGGTAATAACGCNTGGCACTGCCGGCAGTATATTCGGCAGCGGATCCATCACCGGCCCAAGCGTCACAAATCANNCTGGCAACATCTCCCGGCTCAGCTGCCTCCACCACCAGCAACATATTTGCCAAAAACCTGCCCCAGNCAACCTGCT] [+] EMBL BX619441 [CAAAACATAANNTGCAATGTCTCACTACAATGAACAGAGACATTCTGAACACGTTGGTGGAAATTTACAACCAGCAGGNNAAGCAGCGCCAAACCGACCAACGCTCCATTGAACACGTTCTGCATCNATNGGATCGGGTGGAAGTAATGCTCCGGCGTCCGGCATATTTGGCAGTGGCACTAGTAGCAATGCGTTCGGATCTGGATTCGGATCCAGCGCTGCCATCGGTGGTAATAACGCNTGGCACTGCCGGCAGTATATTCGGCAGCGGATCCATCACCGGCCCAAGCGTCACAAATCANNCTGGCAACATCTCCCGGCTCAGCTGCCTCCACCACCAGCAACATATTTGCCAAAAACCTGCCCCAGNCAACCTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4349#0 CCGATCGTATAATCCAAAGCAGCAACCGCAAAACACTCGAAAATGGTTCTTTGTATGTAC 60 consensus_4349#1 ------------------------------------------------------------ consensus_4349#0 TTTCTGAATAACAGTTGCCGATTTGGCTCCCGATGCAACAACGAGCACATCGACATTGGG 120 consensus_4349#1 ------------------------------------------------------------ consensus_4349#0 TCGATTGTAAAAACTGAAGTGGACGTGTCGCTGAAAGGCAACCAATGGCCGCTATCGTGT 180 consensus_4349#1 ------------------------------------------------------------ consensus_4349#0 TTCGGACCGTTCAAGGAGCGAAACTGCATACCAAGCTTTATAGAAGATCTCAGCTTTGAA 240 consensus_4349#1 ------------------------------------------------------------ consensus_4349#0 GAGATCCGGATGATGTATCTGGAGGCCAAAATGCAAAACAACATCCCAGCGCACCAGATG 300 consensus_4349#1 ------------------------------------------------------------ consensus_4349#0 CAGCTGGCGCAGATGATCAATGACGCCAAAACA-AAGATGCAATGTCTCACTACAATGAA 359 consensus_4349#1 --------------------------CAAAACATAANNTGCAATGTCTCACTACAATGAA 34 ******* ** ********************** consensus_4349#0 CAGAGACATTCTGAACACGTTGGTGGAAATTTACAACCAGCAGGAAA-GCAGCGCCAAAC 418 consensus_4349#1 CAGAGACATTCTGAACACGTTGGTGGAAATTTACAACCAGCAGGNNAAGCAGCGCCAAAC 94 ******************************************** * ************ consensus_4349#0 CGACCAACGCTCCATTGAAACACGTT-TGCATCGATTGGATCGGGTGGAAGTAATGCTCC 477 consensus_4349#1 CGACCAACGCTCCATTGAA-CACGTTCTGCATCNATNGGATCGGGTGGAAGTAATGCTCC 153 ******************* ****** ****** ** *********************** consensus_4349#0 GGCGTCCGGCATATTTGGCAGTGGCACTAGTAGCAATGCGTTCGGATCTGGATTCGGATC 537 consensus_4349#1 GGCGTCCGGCATATTTGGCAGTGGCACTAGTAGCAATGCGTTCGGATCTGGATTCGGATC 213 ************************************************************ consensus_4349#0 CAGCGCTGCCATCGGTGGTAGTAACGCT-GGCACTGCCGGCAGTATATTCAGGCAGCGGT 596 consensus_4349#1 CAGCGCTGCCATCGGTGGTAATAACGCNTGGCACTGCCGGCAGTATATTC-GGCAGCGGA 272 ******************** ****** ********************* ******** consensus_4349#0 TCCATCACCGGCC-AAGCGTCACAATC--AGCTGGCAACATCTTT-GGCACAGCTGCCTC 652 consensus_4349#1 TCCATCACCGGCCCAAGCGTCACAAATCANNCTGGCAACATCTCCCGGCTCAGCTGCCTC 332 ************* *********** ************ *** ********** consensus_4349#0 CAGCACCGGCAATATATTTGCCAAA--CCTGCAC--AGCAACCTGCCGCTGGCAAATATC 708 consensus_4349#1 CACCACCAGCAACATATTTGCCAAAAACCTGCCCCAGNCAACCTGCT------------- 379 ** **** **** ************ ***** * ******** consensus_4349#0 T 709 consensus_4349#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||