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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 883 fasta sequence
[GCAAGATCGGCACGATGGGCGTTGCATACTCTCTCTTTCGTCGCCTTGTTAAGGACGGGGGAAGAGAATGTCGGCCGCAGACGTTTGTGCAGCGAAAACATTGTTGAATTTTTTTCTTCTTTTAATTATCTTTTGCATAATATAACCTTTATACTTTTAGTGCGTTTTATTCTAGTTGTACTACCTGTGTGCGTGTACTTTGTACGCCAAATTGAGTTGGTGCCAAGCATTGTGATTTTCGGTCGGCTTAATAAGCAGCCGACTGTTAAAATTTTGATTAACATTTATAACTTTTTCCTTTTTGTCTGTTTTGTAAACTACTACACGACCCCTTGGGGGCGAACAACGAAGGCAATAATGTTTTGGCGATCCCTTCAAACCTAATGCCTGGACACATCCGTGCGCATCATTCCGAACGGAAGGTTCTCCGTGATGGTGGTGGAGTGTGTGTGCATCGTGTATTGTTCACAACAGTTATGCTCAAGCGAAGCGAAGCGGTACATGTTTTGGGATCCACACAACTGTTCCCTTTGTTTGTTTTCCTGGCTAATAGCCGGACAATGCAAACTTACTTCCAACGTGTTTCAGAGCCTTTCTCTGCCGCAAACGTACCTTCCTTCCACATTCGTACTATTATCGCCCAGTAGCGAATAACTGTTCACTTCAACTTGGTACTTCTGTAAGCCCACCGGCCAGCAGGCGATCGTGGTAAGAAGTATTGGGGACGCCATTAAACTTTGGGCAAACGTTGGCGAAAAACGACTTGAAGCCAACCCAAGGGCGNGTGTTACACGCCTNGATCGCATCNATGGGGAACCACCGGGAAAGCGGGATAATTCCGGGTACCAGCNTTCGCATTTGGGGACCCTNTCGCCACATCTCG]
[+] EMBL BX468453 [GCAAGATCGGCACGATGGGCGTTGCATACTCTCTCTTTCGTCGCCTTGTTAAGGACGGGGGAAGAGAATGTCGGCCGCAGACGTTTGTGCAGCGAAAACATTGTTGAATTTTTTTCTTCTTTTAATTATCTTTTGCATAATATAACCTTTATACTTTTAGTGCGTTTTATTCTAGTTGTACTACCTGTGTGCGTGTACTTTGTACGCCAAATTGAGTTGGTGCCAAGCATTGTGATTTTCGGTCGGCTTAATAAGCAGCCGACTGTTAAAATTTTGATTAACATTTATAACTTTTTCCTTTTTGTCTGTTTTGTAAACTACTACACGACCCCTTGGGGGCGAACAACGAAGGCAATAATGTTTTGGCGATCCCTTCAAACCTAATGCCTGGACACATCCGTGCGCATCATTCCGAACGGAAGGTTCTCCGTGATGGTGGTGGAGTGTGTGTGCATCGTGTATTGTTCACAACAGTTATGCTCAAGCGAAGCGAAGCGGTACATGTTTTGGGATCCACACAACTGTTCCCTTTGTTTGTTTTCCTGGCTAATAGCCGGACAATGCAAACTTACTTCCAACGTGTTTCAGAGCCTTTCTCTGCCGCAAACGTACCTTCCTTCCACATTCGTACTATTATCGCCCAGTAGCGAATAACTGTTCACTTCAACTTGGTACTTCTGTAAGCCCACCGGCCAGCAGGCGATCGTGGTAAGAAGTATTGGGGACGCCATTAAACTTTGGGCAAACGTTGGCGAAAAACGACTTGAAGCCAACCCAAGGGCGNGTGTTACACGCCTNGATCGCATCNATGGGGAACCACCGGGAAAGCGGGATAATTCCGGGTACCAGCNTTCGCATTTGGGGACCCTNTCGCCACATCTCG]
consensusID : consensus_4351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 856 fasta sequence
[AGAATCCCCCGAGGTTATGGTGCAGGTGCATGGTTGGAGTGATAAAACACGGTAAATTTATCAGTAGGGCCAGCTATTAGTGCCAGTAGTAGGTGAGACACGAGGCACACGAGAGACCAAAAGTGCGTACGGTTTTTTTTTAGAAGAGGCAAGTCCTGATAATGTACTCTAGAGCACAGCGATAGGCACACTCAAGCCTCTGAAAGGAAGCAATCATCATCGTGTGTGGGTGTGGGTGGG--TTTTTTTCTTTCGCAAACACATGGTGTTTGGTGTATTGGCTGCTGTGCCCATGTAGCTATAACTTCGACGTTTTCCGTCGTTGCATAGCGTTGCCATAATCTCTCTTTCGTCGCCTTGTTAAGGACGGGGGAAGAGAATGTCGG-CGCAGACGTTTGTGCAGCGAAAACCATTGTTGAATTTTTTTCTTCTTTTAATTATCTTTTGCATAAGATATAACCTTTATACTTTTAGTGCG-TTTATTCTAGTTGTACTAACTGGTGGTTGCGTGTACTTTGGTACGCCAAATTGGAGTTGGTGCCAAGCATTGTGATTNTTCGGTCGGCTTAATAAGGCAGCCGACTGTT-AAATTTTGATTAACATTGATAACTTTTTCCTTTTTGTCTGTTTTGTAAACTACTACACGACCCCTTGGGGGCGAACAACGAAGGCAATAATGTTTTGGCGATCCCTTCAAACCTAATGCCTGGACACATCCGTGCGCATCATTCCGAACGGAAGGTTCTCCGTGATGGTGGTGGAGTGTGTGTGCATCGTGTATTGTTCACAACAGTTATGCTCAAGCGAAGCGAAGCGGTACATGTTTTGGGATCCACACAACTGTTCCCTTTGATTTGT]
[+] EMBL AL931008 [AGAATCCCCCGAGGTTATGGTGCAGGTGCATGGTTGGAGTGATAAAACACGGTAAATTTATCAGTAGGGCCAGCTATTAGTGCCAGTAGTAGGTGAGACACGAGGCACACGAGAGACCAAAAGTGCGTACGGTTTTTTTTTAGAAGAGGCAAGTCCTGATAATGTACTCTAGAGCACAGCGATAGGCACACTCAAGCCTCTGAAAGGAAGCAATCATCATCGTGTGTGGGTGTGGGTGGG TTTTTTTCTTTCGCAAACACATGGTGTTTGGTGTATTGGCTGCTGTGCCCATGTAGCTATAACTTCGACGTTTTCCGTCGTTGCATAGCGTTGCCATAATCTCTCTTTCGTCGCCTTGTTAAGGACGGGGGAAGAGAATGTCGG CGCAGACGTTTGTGCAGCGAAAACCATTGTTGAATTTTTTTCTTCTTTTAATTATCTTTTGCATAAGATATAACCTTTATACTTTTAGTGCG TTTATTCTAGTTGTACTAACTGGTGGTTGCGTGTACTTTGGTACGCCAAATTGGAGTTGGTGCCAAGCATTGTGATTNTTCGGTCGGCTTAATAAGGCAGCCGACTGTT AAATTTTGATT ]
[+] EMBL BM600664 [ ccgATCATCGTGTGTGGGTGTGGGTGGGTTTTTTTTTCTTTCGCAAACACATGGTGTTTGGTGTATTGGCTGCTGTGCCCATGTAGCTATAACTACGACGTTTTCCGTCGTTGCATAGCGTTGCCATACTCTCTCTTTCGTCGCCTTGTTAAGGACGGGGGAAGAGAATGTCGGCCGCAGACGTTTGTGCAGCGAAAA CATTGTTGAATTTTTTTCTTCTTTTAATTATCTTTTGCATAAGATATAACCTTTATACTTTTAGTGCGTTTTATTCTAGTTGTACTACCT GTG TGCGTGTACTTT GTACGCCAAATT GAGTTGGTGCCAAGCATTGTGATT TTCGGTCGGCTTAA GCAGCTGATTGTTAAAATTTTGATTAACATTGATAACTTTTTCCTTTTTGTCTGTTTTGTAAACTACTACACGACCCCTTGGGGGCGAACAACGAAGGCAATAATGTTTTGGCGATCCCTTCAAACCTAATGCCTGGACACATCCGTGCGCATCATTCCGAACGGAAGGTTCTCCGTGATGGTGGTGGAGTGTGTGTGCATCGTGTATTGTTCACAACAGTTATGCTCAAGCGAAGCGAAGCGGTACATGTTTTGGGATCCACACAACTGTTCCCTTTGATTTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4351#0 ------------------------------------------------------------
consensus_4351#1 AGAATCCCCCGAGGTTATGGTGCAGGTGCATGGTTGGAGTGATAAAACACGGTAAATTTA 60
consensus_4351#0 ------------------------------------------------------------
consensus_4351#1 TCAGTAGGGCCAGCTATTAGTGCCAGTAGTAGGTGAGACACGAGGCACACGAGAGACCAA 120
consensus_4351#0 ------------------------------------------------------------
consensus_4351#1 AAGTGCGTACGGTTTTTTTTTAGAAGAGGCAAGTCCTGATAATGTACTCTAGAGCACAGC 180
consensus_4351#0 ------------------------------------------------------------
consensus_4351#1 GATAGGCACACTCAAGCCTCTGAAAGGAAGCAATCATCATCGTGTGTGGGTGTGGGTGGG 240
consensus_4351#0 ----------------------------------------------------------GC 2
consensus_4351#1 TTTTTTTCTTTCGCAAACACATGGTGTTTGGTGTATTGGCTGCTGTGCCCATGTAGCTAT 300
consensus_4351#0 AAGATCGGCA--------CGATG---GGCGTTGC-ATACTCTCTCTTTCGTCGCCTTGTT 50
consensus_4351#1 AACTTCGACGTTTTCCGTCGTTGCATAGCGTTGCCATAATCTCTCTTTCGTCGCCTTGTT 360
** *** * ** ** ******* *** *********************
consensus_4351#0 AAGGACGGGGGAAGAGAATGTCGGCCGCAGACGTTTGTGCAGCGAAAAC-ATTGTTGAAT 109
consensus_4351#1 AAGGACGGGGGAAGAGAATGTCGGC-GCAGACGTTTGTGCAGCGAAAACCATTGTTGAAT 419
************************* *********************** **********
consensus_4351#0 TTTTTTCTTCTTTTAATTATCTTTTGCATAA--TATAACCTTTATACTTTTAGTGCGTTT 167
consensus_4351#1 TTTTTTCTTCTTTTAATTATCTTTTGCATAAGATATAACCTTTATACTTTTAGTGCGTTT 479
******************************* ***************************
consensus_4351#0 TATTCTAGTTGTACTACCTG-TG--TGCGTGTACTTTG-TACGCCAAATTG-AGTTGGTG 222
consensus_4351#1 -ATTCTAGTTGTACTAACTGGTGGTTGCGTGTACTTTGGTACGCCAAATTGGAGTTGGTG 538
*************** *** ** ************* ************ ********
consensus_4351#0 CCAAGCATTGTGATTTT-CGGTCGGCTTAATAAG-CAGCCGACTGTTAAAATTTTGATTA 280
consensus_4351#1 CCAAGCATTGTGATTNTTCGGTCGGCTTAATAAGGCAGCCGACTGTTAAA-TTTTGATTA 597
*************** * **************** *************** *********
consensus_4351#0 ACATTTATAACTTTTTCCTTTTTGTCTGTTTTGTAAACTACTACACGACCCCTTGGGGGC 340
consensus_4351#1 ACATTGATAACTTTTTCCTTTTTGTCTGTTTTGTAAACTACTACACGACCCCTTGGGGGC 657
***** ******************************************************
consensus_4351#0 GAACAACGAAGGCAATAATGTTTTGGCGATCCCTTCAAACCTAATGCCTGGACACATCCG 400
consensus_4351#1 GAACAACGAAGGCAATAATGTTTTGGCGATCCCTTCAAACCTAATGCCTGGACACATCCG 717
************************************************************
consensus_4351#0 TGCGCATCATTCCGAACGGAAGGTTCTCCGTGATGGTGGTGGAGTGTGTGTGCATCGTGT 460
consensus_4351#1 TGCGCATCATTCCGAACGGAAGGTTCTCCGTGATGGTGGTGGAGTGTGTGTGCATCGTGT 777
************************************************************
consensus_4351#0 ATTGTTCACAACAGTTATGCTCAAGCGAAGCGAAGCGGTACATGTTTTGGGATCCACACA 520
consensus_4351#1 ATTGTTCACAACAGTTATGCTCAAGCGAAGCGAAGCGGTACATGTTTTGGGATCCACACA 837
************************************************************
consensus_4351#0 ACTGTTCCCTTTG-TTTGTTTTCCTGGCTAATAGCCGGACAATGCAAACTTACTTCCAAC 579
consensus_4351#1 ACTGTTCCCTTTGATTTGT----------------------------------------- 856
************* *****
consensus_4351#0 GTGTTTCAGAGCCTTTCTCTGCCGCAAACGTACCTTCCTTCCACATTCGTACTATTATCG 639
consensus_4351#1 ------------------------------------------------------------
consensus_4351#0 CCCAGTAGCGAATAACTGTTCACTTCAACTTGGTACTTCTGTAAGCCCACCGGCCAGCAG 699
consensus_4351#1 ------------------------------------------------------------
consensus_4351#0 GCGATCGTGGTAAGAAGTATTGGGGACGCCATTAAACTTTGGGCAAACGTTGGCGAAAAA 759
consensus_4351#1 ------------------------------------------------------------
consensus_4351#0 CGACTTGAAGCCAACCCAAGGGCGNGTGTTACACGCCTNGATCGCATCNATGGGGAACCA 819
consensus_4351#1 ------------------------------------------------------------
consensus_4351#0 CCGGGAAAGCGGGATAATTCCGGGTACCAGCNTTCGCATTTGGGGACCCTNTCGCCACAT 879
consensus_4351#1 ------------------------------------------------------------
consensus_4351#0 CTCG 883
consensus_4351#1 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||