These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4373#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [ATCGCCCGAGGTNAAAACGGGCACGAGATCACGGAGAAGATCACATCCCGGCGCACGAGCTGAAGCCGAACCATGCCGGCACGGTGGTGACGTACGACGGGCACGGTCCGGTGCCGACCACGGCCGGAGCGGTCGGCGCGCTCGGTGACGGGGAGCCGCGGCGCGACCATCACTTCCAGACGCCGCACATGCACGCGCGGACGCACCACGGGCACGGCCACGGGCACCATCAGCATGCCGAGCATGGCGACCATACCGGCCAGCACCATCCGCATGGGCACGGGCAGCACAAGCCCCACCAGGCGGTACCGGCCACCGANACCACCGAGCAGTGACTTTCCGCCTAACGCATACTAACACACACCACAACCTTTAGAACATTAGAGAGCGGGGCCAGGGAGGGTGGGATGGTTGTGAGCGGTTTCGTGTGAGGAACAATACATGAGAAGCGGGGTGTGTGTGTGAGAGANGAGAAGAAGAAGAAAGAAGAAAGAAGACAGAAGANAGAAGCAANGAAGCAAGAAGNAAGAAGAACACNCGNACGCANGCNCCANCACNACAANGAGGAAAGAAAGCGAAACGCAGAGGTAAGTAGAGTAGATAAATCTACTTCTTGGNGGG] [+] EMBL AL934689 [ATCGCCCGAGGTNAAAACGGGCACGAGATCACGGAGAAGATCACATCCCGGCGCACGAGCTGAAGCCGAACCATGCCGGCACGGTGGTGACGTACGACGGGCACGGTCCGGTGCCGACCACGGCCGGAGCGGTCGGCGCGCTCGGTGACGGGGAGCCGCGGCGCGACCATCACTTCCAGACGCCGCACATGCACGCGCGGACGCACCACGGGCACGGCCACGGGCACCATCAGCATGCCGAGCATGGCGACCATACCGGCCAGCACCATCCGCATGGGCACGGGCAGCACAAGCCCCACCAGGCGGTACCGGCCACCGANACCACCGAGCAGTGACTTTCCGCCTAACGCATACTAACACACACCACAACCTTTAGAACATTAGAGAGCGGGGCCAGGGAGGGTGGGATGGTTGTGAGCGGTTTCGTGTGAGGAACAATACATGAGAAGCGGGGTGTGTGTGTGAGAGANGAGAAGAAGAAGAAAGAAGAAAGAAGACAGAAGANAGAAGCAANGAAGCAAGAAGNAAGAAGAACACNCGNACGCANGCNCCANCACNACAANGAGGAAAGAAAGCGAAACGCAGAGGTAAGTAGAGTAGATAAATCTACTTCTTGGNGGG] consensusID : consensus_4373#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [CCGCCCACGCGTCCGGGAGACGAACTCGCACACCGACCGGGCCGAGCTGGTGGAGATGATACGGCTGATCAAGGGCACGAGCGACCGCAACTGGGACGAGCTGGTCGAGAGCCTGCAGTCGGAGAACGCGATCCTCGACTTCAACCGGCTCCGGTCGGAGCTGGTCGAGGAGGAGCCGCTCGCGGGCGGCGCCAAGGCGGCCGACCAGGAGCCGGCCGGTTCCGGGCCGCCCGAGTACGCCGACCACCAGCGCCTGATGCACCATCAGTACGACGCGCTGCGGCACCGGGCGCACGGCGAGCCGGAGCAGCCGGCCGGCGAGACGCCGAAGCAGCACCAGCAGCCGGCGGGCCACCATGCGGTCGGCGAGCGGATCGACGCCCACCATCATCTGGGGCGCGGCCCGCACGGCTCGCTGGTGATACAGGCCGACCGGGCCGACCAGGAGGTGCACCGGAGCATCCAGAACGGGCACGAGATCACGGAGAAGATTCACATCCCGGCGCACGAGCTGAAGCCGAACCATGCCGGCACGGTGGTGACGTACGACGGGCACGGTCCGGTGCCGACCACGGCCGGAGCGGTCGGCGCGCTCGGTGACGGGGAGCCGCGGCGCGACCA] [+] EMBL BM645328 [CCGCCCACGCGTCCGGGAGACGAACTCGCACACCGACCGGGCCGAGCTGGTGGAGATGATACGGCTGATCAAGGGCACGAGCGACCGCAACTGGGACGAGCTGGTCGAGAGCCTGCAGTCGGAGAACGCGATCCTCGACTTCAACCGGCTCCGGTCGGAGCTGGTCGAGGAGGAGCCGCTCGCGGGCGGCGCCAAGGCGGCCGACCAGGAGCCGGCCGGTTCCGGGCCGCCCGAGTACGCCGACCACCAGCGCCTGATGCACCATCAGTACGACGCGCTGCGGCACCGGGCGCACGGCGAGCCGGAGCAGCCGGCCGGCGAGACGCCGAAGCAGCACCAGCAGCCGGCGGGCCACCATGCGGTCGGCGAGCGGATCGACGCCCACCATCATCTGGGGCGCGGCCCGCACGGCTCGCTGGTGATACAGGCCGACCGGGCCGACCAGGAGGTGCACCGGAGCATCCAGAACGGGCACGAGATCACGGAGAAGATTCACATCCCGGCGCACGAGCTGAAGCCGAACCATGCCGGCACGGTGGTGACGTACGACGGGCACGGTCCGGTGCCGACCACGGCCGGAGCGGTCGGCGCGCTCGGTGACGGGGAGCCGCGGCGCGACCA] consensusID : consensus_4373#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence [GCAAGAATCTGCCACGAGGTAAGCCGACCGGGCCGACCAGGAGGTGCACCGGAGCATCCAGAACGGGCACGAGATCACGGAGAAGATTCACATCCCGGCGCACGAGCTGAAGCCGAACCATGCCGGCACGGTGGTGACGTAGGACGGGCACGGTCCGGTGCCGACCACGGCCGGAGCGGTCGGCGCGCTCGGTGACGGGGAGCCGCGGCGCGACCATCACTTCCAGACGCCGCACATGCACGCGCGGACGCACCACGGGCACGGCCACGGGCACCATCAGCATGCCGAGCATGGCGACCATACCGGCCAGCACCATCCACATGGGCACGGGCAGCACAAGCCCCACCAGGCGGTACCGGCCACCGACANCACCGAGCAGTGACTTTCCGCTAAACGCATACTAACACAGCANCGAGCAGCGTTAGACATTAGAGAGCGGCGTCAGGGAGGGTGGGATGGGTATGTGAGCGGTTTCCGTGTGAGGAACAAGTAAGCAGTGAGGAAA] [+] EMBL BX468779 [GCAAGAATCTGCCACGAGGTAAGCCGACCGGGCCGACCAGGAGGTGCACCGGAGCATCCAGAACGGGCACGAGATCACGGAGAAGATTCACATCCCGGCGCACGAGCTGAAGCCGAACCATGCCGGCACGGTGGTGACGTAGGACGGGCACGGTCCGGTGCCGACCACGGCCGGAGCGGTCGGCGCGCTCGGTGACGGGGAGCCGCGGCGCGACCATCACTTCCAGACGCCGCACATGCACGCGCGGACGCACCACGGGCACGGCCACGGGCACCATCAGCATGCCGAGCATGGCGACCATACCGGCCAGCACCATCCACATGGGCACGGGCAGCACAAGCCCCACCAGGCGGTACCGGCCACCGACANCACCGAGCAGTGACTTTCCGCTAAACGCATACTAACACAGCANCGAGCAGCGTTAGACATTAGAGAGCGGCGTCAGGGAGGGTGGGATGGGTATGTGAGCGGTTTCCGTGTGAGGAACAAGTAAGCAGTGAGGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4373#0 --------------------------------------------ATCGCCCGAGG--TNA 14 consensus_4373#2 GCAAGAATCTGCCACGAGGTAAGCCGACCGGGCCGACCAGGAGGTGCACCGGAGCATCCA 60 consensus_4373#1 ------------------------CCGCCCACGCGTCCGGGAGACGAACTCGCAC--ACC 34 * * consensus_4373#0 AAACGGGCACGAGATCACGGAGAAGAT-CACAT--CCCGGCGCACGAGC---TGAAGCCG 68 consensus_4373#2 GAACGGGCACGAGATCACGGAGAAGATTCACAT--CCCGGCGCACGAGC---TGAAGCCG 115 consensus_4373#1 GACCGGGC-CGAGCTGGTGGAGATGATACGGCTGATCAAGGGCACGAGCGACCGCAACTG 93 * ***** **** * ***** *** * * * * ******** * * * * consensus_4373#0 AACCATGCCGGCACGGTGGTGACGTACGACGGGCACGGTCC--GGTGCCGACCA----CG 122 consensus_4373#2 AACCATGCCGGCACGGTGGTGACGTAGGACGGGCACGGTCC--GGTGCCGACCA----CG 169 consensus_4373#1 GGACGAGCTGGTCGAGAGCCTGCAGTCGGAGAACGCGATCCTCGACTTCAACCGGCTCCG 153 * ** ** * * * * * * ** *** * * *** ** consensus_4373#0 GCCGGAGC-GGTCGGCGCGC--TCGGTGACGGGGAGCCGCGGCGCGACC-ATCACTTCCA 178 consensus_4373#2 GCCGGAGC-GGTCGGCGCGC--TCGGTGACGGGGAGCCGCGGCGCGACC-ATCACTTCCA 225 consensus_4373#1 GTCGGAGCTGGTCGAGGAGGAGCCGCTCGCGGGCGGCGCCAAGGCGGCCGACCAGGAGCC 213 * ****** ***** * * ** * **** ** * *** ** * ** * consensus_4373#0 GACGCCGCACATGCACGCGCGGACGCACC-ACGGGCACGGCCACGGGCACCATCAGCATG 237 consensus_4373#2 GACGCCGCACATGCACGCGCGGACGCACC-ACGGGCACGGCCACGGGCACCATCAGCATG 284 consensus_4373#1 GGC-CGGTTCCGGGCCGCCCGAGTACGCCGACCACCAGCGCCTGATGCACCATCAGTACG 272 * * * * * * *** ** * ** ** ** *** ********** * * consensus_4373#0 CCGAGCATGGCGACCATAC---CGGCCAGCACCATCCGCATGGGCACGGGCAGCACAAGC 294 consensus_4373#2 CCGAGCATGGCGACCATAC---CGGCCAGCACCATCCACATGGGCACGGGCAGCACAAGC 341 consensus_4373#1 ACGCGCTGCGGCACCGGGCGCACGGCGAGCCGGAGCAGCCGGCCGGCGAGACGCCGAAGC 332 ** ** * *** * **** *** * * * * ** * ** **** consensus_4373#0 CCCACCAGGCGGTACCGGCCACCGANACCACCGAGCAGTGACTTTCCGCCTAACGCATAC 354 consensus_4373#2 CCCACCAGGCGGTACCGGCCACCGACANCACCGAGCAGTGACTTTCCGCTAAACGCATAC 401 consensus_4373#1 AGCACCAGCAGCCGGCGGGCCACCATGCGGTCGGCGAGCGGATCGACGCCCACCATCATC 392 ****** * *** * * * ** ** * * *** * * * consensus_4373#0 TAACACA-CACCACAACCTTTAGAACATTAGAGAGCGGGGCCAGGGAGGGTGGGATGGTT 413 consensus_4373#2 TAACACAGCANCGAGCAGCGTTAGACATTAGAGAGCGGCGTCAGGGAGGGTGGGATGGGT 461 consensus_4373#1 TGGGGCGCGGCCCGCACGGCTCGCTGGTGATACAGGCCGACCGGGCCGACCAGGAGGTGC 452 * * * * * * * ** * ** * *** * consensus_4373#0 --GTGAGCGGTTTC-GTGTGAGGAACAATACATGAGAAGCGGGGTGTGTGTGTGAGAGAN 470 consensus_4373#2 ATGTGAGCGGTTTCCGTGTGAGGAACAA---GTAAGCAGTGAGGAAA------------- 505 consensus_4373#1 ACCGGAGCA--TCCAGAACG-GGCACGAGA-TCACGGAGAAGATTCACATCCCGGCGCAC 508 **** * * * * ** ** * * ** consensus_4373#0 GAGAAGAAGAAGAAAGAAGAAAGAAGACAGAAGANAGAAGCAANGAAGCAAGAAGNAAGA 530 consensus_4373#2 ------------------------------------------------------------ consensus_4373#1 GAGCTGAAGCCGAACCATGCCGGCACGGTGGTGACGTACGACGGGCACGGTCCGGTGCCG 568 consensus_4373#0 AGAACACNCGNACGCANGCNCCANCACNACAANGAGGAAAGAAAGCGAAACGCAGAGGTA 590 consensus_4373#2 ------------------------------------------------------------ consensus_4373#1 ACCACGGCCGGAGCGGTCGGCGCGCTCGGTGACGGGGAGCCGCGGCGCGACCA------- 621 consensus_4373#0 AGTAGAGTAGATAAATCTACTTCTTGGNGGG 621 consensus_4373#2 ------------------------------- consensus_4373#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||