cluster # 4375

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Anopheles gambiae
cluster # 4375 cluster # 4375 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4375#0 length = 609 sequences # 2

consensus_4375#1 length = 526 sequences # 1

consensusID : consensus_4375#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 609
fasta sequence

                              [CGTGTTAACTAAAATGGCAAAGGTACACGAAGCACTGAAACCGATCCAGTGGCTAATCGGCACCTGGGAATCGGTAACGGCCAAGGGCAGCTTTCCGACGATCAAAGACTTTTCCTACAACGAGGTGATCAAGTTCGTGTCGATCGGGCAGCCGTTGCTTAACTACGAGGCACACTCCCGCCATCCCGAGTCCGGCGCCCCGATGCACCTGGAGCGGGGCTTTCTGCGCATCAAACCCGGCACCAGCCAGGTTGCCTTCATGGTGGCACACAACTTTGGCCTGGCCGTGCTGGAGGAGGGCGAAGCAACGGACCACGAACTGAACCTGACCTCTAAATCGGTCGAGCGTATGTCATTTGCGAAAGATCCGGCCGTGAAAGCGATTCGCAAAAGATACTGCCTCAATGCGGACGGGACGCTGAAGATTCAGACGGACATGGAAACGGATACCACGCCGATGACGAACCATTTGCGTGTGGTGTACAAACGTTCGGATTGAAGTGGATTGCGGGGGGGTCGGGAAAATAGCTTCGGGTGCAGGCAGACAAACAATGTTCCTTTTAGTGGTTTGCCTCGAATGGTGTTGGACAGTGTAGGTTAGTTGTTACA]

[+] EMBL BX609853             [CGTGTTAACTAAAATGGCAAAGGTACACGAAGCACTGAAACCGATCCAGTGGCTAATCGGCACCTGGGAATCGGTAACGGCCAAGGGCAGCTTTCCGACGATCAAAGACTTTTCCTACAACGAGGTGATCAAGTTCGTGTCGATCGGGCAGCCGTTGCTTAACTACGAGGCACACTCCCGCCATCCCGAGTCCGGCGCCCCGATGCACCTGGAGCGGGGCTTTCTGCGCATCAAACCCGGCACCAGCCAGGTTGCCTTCATGGTGGCACACAACTTTGGCCTGGCCGTGCTGGAGGAGGGCGAAGCAACGGACCACGAACTGAACCTGACCTCTAAATCGGTCGAGCGTATGTCATTTGCGAAAGATCCGGCCGTGAAAGCGATTCGCAAAAGATACTGCCTCAATGCGGACGGGACGCTGAAGATTCAGACGGACATGGAAACGGATACCACGCCGATGACGAACCATTTGCGTGTGGTGTACAAACGTTCGGATTGAAGTGGATTGCGGGGGGGTCGGGAAAATAGCTTCGGGTGCAGGCAGACAAACAATGTTCCTTTTAGTGGTTTGCCTCGAATGGTGTTGGACAGTGTAGGTTAGTTGTTACA]
[+] EMBL BM597534             [                                                                                                          GACTTTTCCTACAACGAGGTGATCAAGTTCGTGTCGATCGGGCAGTCGTTGCTTAACTACCAGGCACACTCCCGCCATCCCGAGTCCGGCGCCCCGATGCACCTGGAGCGGGGCTTTCTGCGCATCAAACCCGGCACC                                                                                                                                                                                                                                                                                                                                                                             ]




>consensus_4375#0
CGTGTTAACTAAAATGGCAAAGGTACACGAAGCACTGAAACCGATCCAGTGGCTAATCGG
CACCTGGGAATCGGTAACGGCCAAGGGCAGCTTTCCGACGATCAAAGACTTTTCCTACAA
CGAGGTGATCAAGTTCGTGTCGATCGGGCAGCCGTTGCTTAACTACGAGGCACACTCCCG
CCATCCCGAGTCCGGCGCCCCGATGCACCTGGAGCGGGGCTTTCTGCGCATCAAACCCGG
CACCAGCCAGGTTGCCTTCATGGTGGCACACAACTTTGGCCTGGCCGTGCTGGAGGAGGG
CGAAGCAACGGACCACGAACTGAACCTGACCTCTAAATCGGTCGAGCGTATGTCATTTGC
GAAAGATCCGGCCGTGAAAGCGATTCGCAAAAGATACTGCCTCAATGCGGACGGGACGCT
GAAGATTCAGACGGACATGGAAACGGATACCACGCCGATGACGAACCATTTGCGTGTGGT
GTACAAACGTTCGGATTGAAGTGGATTGCGGGGGGGTCGGGAAAATAGCTTCGGGTGCAG
GCAGACAAACAATGTTCCTTTTAGTGGTTTGCCTCGAATGGTGTTGGACAGTGTAGGTTA
GTTGTTACA

consensusID : consensus_4375#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence

                              [ATGAATCCCCTGAGGTTATTCTGATGTTGGAGCTGGCGCCAAATGCTGTCTTTAGATTCCTTGGCTCAAAGTTTTGCGCAAACCAATTAACGTGTAACTAAAATGGCAAAGGTACACGAAGCACTGAAACCGATCCAGTGGCTAATCGGCACCCTGGGAATCGGTAACGGCCAAGGCCAGCTTTCCCGAGCATCAAAGAACTTATTTCCTAACAAGATNGGTTGNATACCAAAGCTTCACCGGTTAGGTTCCACGAATTCCCGTCTTTCTCCCAAATAGNCACCNGNGTTGGCCTTATAAAATCGTTAAACCGGAATGTTGTGCTCAACGAAACTTCCACCTGAGACAATTCACCACCGGAANGNTTCCCAGNGAGCCGGCACNCACCGGAATAAGAGCAACCCTTTGTGAATGACCGGNGGTGCTTATCTTTGCCGGCATTCAAAAAAGCCAGAGTCNACCAGAGCCAAGGTTTGTCTTTACCACTTAGAGTTAGGCACACCAAATCTATTTGGTGTCCTTAGCG]

[+] EMBL AL931020             [ATGAATCCCCTGAGGTTATTCTGATGTTGGAGCTGGCGCCAAATGCTGTCTTTAGATTCCTTGGCTCAAAGTTTTGCGCAAACCAATTAACGTGTAACTAAAATGGCAAAGGTACACGAAGCACTGAAACCGATCCAGTGGCTAATCGGCACCCTGGGAATCGGTAACGGCCAAGGCCAGCTTTCCCGAGCATCAAAGAACTTATTTCCTAACAAGATNGGTTGNATACCAAAGCTTCACCGGTTAGGTTCCACGAATTCCCGTCTTTCTCCCAAATAGNCACCNGNGTTGGCCTTATAAAATCGTTAAACCGGAATGTTGTGCTCAACGAAACTTCCACCTGAGACAATTCACCACCGGAANGNTTCCCAGNGAGCCGGCACNCACCGGAATAAGAGCAACCCTTTGTGAATGACCGGNGGTGCTTATCTTTGCCGGCATTCAAAAAAGCCAGAGTCNACCAGAGCCAAGGTTTGTCTTTACCACTTAGAGTTAGGCACACCAAATCTATTTGGTGTCCTTAGCG]




>consensus_4375#1
ATGAATCCCCTGAGGTTATTCTGATGTTGGAGCTGGCGCCAAATGCTGTCTTTAGATTCC
TTGGCTCAAAGTTTTGCGCAAACCAATTAACGTGTAACTAAAATGGCAAAGGTACACGAA
GCACTGAAACCGATCCAGTGGCTAATCGGCACCCTGGGAATCGGTAACGGCCAAGGCCAG
CTTTCCCGAGCATCAAAGAACTTATTTCCTAACAAGATNGGTTGNATACCAAAGCTTCAC
CGGTTAGGTTCCACGAATTCCCGTCTTTCTCCCAAATAGNCACCNGNGTTGGCCTTATAA
AATCGTTAAACCGGAATGTTGTGCTCAACGAAACTTCCACCTGAGACAATTCACCACCGG
AANGNTTCCCAGNGAGCCGGCACNCACCGGAATAAGAGCAACCCTTTGTGAATGACCGGN
GGTGCTTATCTTTGCCGGCATTCAAAAAAGCCAGAGTCNACCAGAGCCAAGGTTTGTCTT
TACCACTTAGAGTTAGGCACACCAAATCTATTTGGTGTCCTTAGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4375#0      CGTGTTAACTAAAATGGCAAAGGTACACGAAGCACTGAAACCGATCCAGTGGCTAATCGG 60
consensus_4375#1      ----------------------------------ATGAATCC---CCTGAGGTTATTCTG 23
                                                         **** **   ** * ** ** ** *

consensus_4375#0      CACCTGGGAATCGGTAACGGCCAAGGGCAGCTTTCCGACGATCAAAGACTTTTCCTACAA 120
consensus_4375#1      -ATGTTGGAGCTGGC----GCCAAATGCTGTCTTTAGATTCCTTGGCTCAAAGTTTTGCG 78
                       *  * ***   **     *****  ** *  **  **          *      *    

consensus_4375#0      CGAGGTGATCAAGTTCGTGTCGATCGGGCAGCCGTTGCTTAACTACGAGGCACACTCCCG 180
consensus_4375#1      CAAACCAATTAACGTGTAACTAAAATGGCAAAGGTACACGAAGCACTGAAACCGATCCAG 138
                      * *    ** **  *       *   ****   **     **  **      *  *** *

consensus_4375#0      ---CCATCCCGAGTCCGGCGCCCCGATG-CACCTGGAGCGGGGCTTTCTGCGCATCAAA- 235
consensus_4375#1      TGGCTAATCGGCACCCTGGGAATCGGTAACGGCCAAGGCCAGCTTTCCCGAGCATCAAAG 198
                         * *  * *   ** * *   ** *  *  *    **  *  ** * * ******** 

consensus_4375#0      --CCCGGCACC-AGCCAGGTTGCCTTCATGGTGGCACACAACTTTGGCCTGGCCGTGCTG 292
consensus_4375#1      AACTTATTTCCTAACAAGATNGGTTGNATACCAAAGCTTCACC--GGTTAGGTTCCACGA 256
                        *      ** * * ** * *  *  **       *   **   **   **     *  

consensus_4375#0      GAGGAGGGCGAAGCAACGGACCACGAACTGAACCTGACCTCTAAATCGGTCGAGC--GTA 350
consensus_4375#1      ATTCCCGTCTTTCTCCCAAATAGNCACCNGNGTTGGCCTTATAAAATCGTTAAACCGGAA 316
                            * *       *  *     * * *     * * * ****   **  * *  * *

consensus_4375#0      TGTCATTTGCGAAAGATCCGGCCGTGAAAGCGATTCGCAAAAGATACTGCCTCAATGCGG 410
consensus_4375#1      TGTTGTGCTCAACGAAACTTCCACCTGAGACAATTCACCACCGGAANGNTTCCCAGNGAG 376
                      ***  *   * *   * *   *     *  * **** * *  *  *      * *    *

consensus_4375#0      ACGGGACGCTGAAGATTCAGACGGACATGGAAACGGATACCACGCCGATGACGAACCATT 470
consensus_4375#1      CCGGCACNCACCGGAATAAGAGCAAC-CCTTTGTGAATGAC-CGGNGGTGCTTATC--TT 432
                       *** ** *    ** * ***   **        * **  * **  * **   * *  **

consensus_4375#0      TGCGTGTGGTGTACAAACGTTCGGATTGAAGTGGATTGCGGGGGGGTCGGGAAAATAGCT 530
consensus_4375#1      TGC-CGGCATTCAAAAAAGCCAGAGTCNACCAGAGCCA----AGGTTTGTCTTTACCACT 487
                      ***  *   *  * *** *   *  *  *   *          ** * *     *   **

consensus_4375#0      TCGGGTGCAGGCAGACAAACAATGTTCCTTTTAGTGGTTTGCCTCGAATGGTGTTGGACA 590
consensus_4375#1      TAGAGT-TAGGCACAC---CAAATCTATTTGGTGTCCTTAGCG----------------- 526
                      * * **  ***** **   ***   *  **   **  ** **                  

consensus_4375#0      GTGTAGGTTAGTTGTTACA 609
consensus_4375#1      -------------------