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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4380#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 984 fasta sequence
[ATGTTGATCCTAGCTACAAGAAATGAATCGGTTCCAATTTTACGAAAAGCTTTCAAGAACGCTTCCTACTATAATTTGGCAACGTTTCCGTATGAAAAATATTTTAAACAACTTTGGCTTAGTGATGCAAACCCTGACATGATCTCTCCGGAAGTACAACGAAATGTTGACATTTTTATTTCCAATTTTGATCAACTATTGAAAGGTGTCGGATGCAAATCATTCCTAGAAGTGCCTCAGCTGTGCAAAATCATGGGTATTATATATCAAGACCGCATTCGGAAGCCCAACATTCAGTGGCATACAAATTATGAAATTGGCTCCATCTACAATACTTTTCTGCAAAGTCAGTTTGAGAATACAGTGCGCGGAAAGTTTGATGAAATGGACAAGCTACACGTGCTGGCTAAAGAACTGATACAAAAAGAATTTTACGCGAAACATTCACAGCTGGCGTGCGAGCTTGAATATAATTGTTGCAATAATCCCAAGCAGTACGAGCAGATGGCACATTTTGGATTAATAATGATTCAGCTCGATGCTTCGGAGTGTGTCGACTTTATGCATCGCACGGTGATGGAATATTTTCTGGTGCGGAATTGCTTATTAGATGATGTCGATAGAGAAATGTTTTTTAACTTTCTTCGGCGCTATTTCTGCGTCTCGCGGGCAAACATTGCGGATAAGTTTATTGACTTTTTCCTGCACGATTTGAAATGTCTTACGTCGCACAAAAAGCACATTATTAGCTCATACCTTTACAGCAGCTCTAATATACTTGCAACGTGCATCAGAATGGCGCT-AACAATGCCACTTTC-ATACGTTGCGGATGCTGCTGTCGGTTGCTCCTAAGGAGTTGCTCCGAAGCGTACATTTCCGCTTTGGAGGTACCAACAATCCGCAAGGCAATCAATTCGACGAGAAGAATGAAATCAATCTAAAACGGCTCGGGGAAAGGCAGACGATTCTGTTGCTAGAGACGCT]
[+] EMBL BX624147 [ATGTTGATCCTAGCTACAAGAAATGAATCGGTTCCAATTTTACGAAAAGCTTTCAAGAACGCTTCCTACTATAATTTGGCAACGTTTCCGTATGAAAAATATTTTAAACAACTTTGGCTTAGTGATGCAAACCCTGACATGATCTCTCCGGAAGTACAACGAAATGTTGACATTTTTATTTCCAATTTTGATCAACTATTGAAAGGTGTCGGATGCAAATCATTCCTAGAAGTGCCTCAGCTGTGCAAAATCATGGGTATTATATATCAAGACCGCATTCGGAAGCCCAACATTCAGTGGCATACAAATTATGAAATTGGCTCCATCTACAATACTTTTCTGCAAAGTCAGTTTGAGAATACAGTGCGCGGAAAGTTTGATGAAATGGACAAGCTACACGTGCTGGCTAAAGAACTGATACAAAAAGAATTTTACGCGAAACATTCACAGCTGGCGTGCGAGCTTGAATATAATTGTTGCAATAATCCCAAGCAGTACGAGCAGATGGCACATTTTGGATTAATAATGATTCAGCTCGATGCTTCGGAGTGTGTCGACTTTATGCATCGCACGGTGATGGAATATTTTCTGGTGCGGAATTGCTTATTAGATGATGTCGATAGAGAAATGTTTTTTAACTTTCTTCGGCGCTATTTCTGCGTCTCGCGGGCAAACATTGCGGATAAGTTTATTGACTTTTTCCTGCACGATTTGAAATGTCTTACGTCGCACAAAAAGCACATTATTAGCTCATACCTTTACAGCAGCTCTAATATACTTGCAACGTGCATCAGAATGGCGCT AACAATGCCACTTTC ATACGTT ]
[+] EMBL BX614730 [ AATTGGCTCCATCTACAATACTTTTCTGCAAAGTCAGTTTGAGAATACAGTGCGCGGAAAGTTTGATGAAATGGACAAGCTACACGTGCTGGCTAAAGAACTGATACAAAAAGAATTTTACGCGAAACATTCACAGCTGGCGTGCGAGCTTGAATATAATTGTTGCAATAATCCCAAGCAGTACGAGCAGATGGCACATTTTGGATTAATAATGATTCAGCTCGATGCTTCGGAGTGTGTCGACTTTATGCATCGCACGGTGATGGAATATTTTCTGGTGCGGAATTGCTTATTAGATGATGTCGATAGAGAAATGTTTTTTAACTTTCTTCGGCGCTATTTCTGCGTCTCGCGGGCAAACATTGCGGATAAGTTTATTGACTTTTTCCTGCACGATTTGAAATGTCTTACGTCGCACAAAAAGCACATTATTAGCTCATACCTTTACAGCAGCTCTAATATACTTGCAACGTGCATCAGAATGGCGCTAAACAATGCCACTTTCAATACGTTGCGGATGCTGCTGTCGGTTGCTCCTAAGGAGTTGCTCCGAAGCGTACATTTCCGCTTTGGAGGTACCAACAATCCGCAAGGCAATCAATTCGACGAGAAGAATGAAATCAATCTAAAACGGCTCGGGGAAAGGCAGACGATTCTGTTGCTAGAGACGCT]
consensusID : consensus_4380#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 837 fasta sequence
[CGAGGCAGATCGGCACGNGGGCAACCCTGACATGATCTCTCCGGAAGTACAACGAAATGTTGACATTTTTATTTCCAATTTTGATCAACTATTGAAAGGTGTCGGATGCAAATCATTCCTAGAAGTGCCTCAGCTGTGCAAAATCATGGGTATTATATATCAAGACCGCATTCGGAAGCCCAACATTCAGTGGCATACAAATTATGAAATTGGCTCCATCTACAATACTTTTCTGCAAAGTCAGTTTGAGAATACAGTGCGCGGAAAGTTTGATGAAATGGACAAGCTACACGTGCTGGCTAAAGAACTGATACAAAAAGAATTTTACGCGAAACATTCACAGCTGGCGTGCGAGCTTGAATATAATTGTTGCAATAATCCCAAGCAGTACGAGCAGATGGCACATTTGGGATTAATAATGATTCAGCTCGATGCTTCGGAGTGTGTCGACTTTATGCATCGCACGGTGATGGAATATTACTGGTGCGGAATTGCTTATTAGATGATGTCGATAGAGAAATGTAAAAACTTTCTTCGGCGCTATTTCTGCGTCTCGCGGGGCAAAAGCATTGCGGATAACGGTGACATTGGACTTTATTNNACCNTGCACCGAATTCTNGACAATTGTCCTTACCAGTTCNGCAACGAAATAACAGGCACCATTTTAATCAAAGGGCTCCCATTAACCCTTTTAAACANACGGCAAAGGNGTCCTTAATTCATTAACCTTTTGGNCAAACGGTTGGCACATTCCAGAAAACTCGGGGCACGGCCTAAAAGCCAAATTGGCCCAACCTTTTCCAAAACTAACGCGTTTCGCCAGAAATTNGCACNTCG]
[+] EMBL BX467181 [CGAGGCAGATCGGCACGNGGGCAACCCTGACATGATCTCTCCGGAAGTACAACGAAATGTTGACATTTTTATTTCCAATTTTGATCAACTATTGAAAGGTGTCGGATGCAAATCATTCCTAGAAGTGCCTCAGCTGTGCAAAATCATGGGTATTATATATCAAGACCGCATTCGGAAGCCCAACATTCAGTGGCATACAAATTATGAAATTGGCTCCATCTACAATACTTTTCTGCAAAGTCAGTTTGAGAATACAGTGCGCGGAAAGTTTGATGAAATGGACAAGCTACACGTGCTGGCTAAAGAACTGATACAAAAAGAATTTTACGCGAAACATTCACAGCTGGCGTGCGAGCTTGAATATAATTGTTGCAATAATCCCAAGCAGTACGAGCAGATGGCACATTTGGGATTAATAATGATTCAGCTCGATGCTTCGGAGTGTGTCGACTTTATGCATCGCACGGTGATGGAATATTACTGGTGCGGAATTGCTTATTAGATGATGTCGATAGAGAAATGTAAAAACTTTCTTCGGCGCTATTTCTGCGTCTCGCGGGGCAAAAGCATTGCGGATAACGGTGACATTGGACTTTATTNNACCNTGCACCGAATTCTNGACAATTGTCCTTACCAGTTCNGCAACGAAATAACAGGCACCATTTTAATCAAAGGGCTCCCATTAACCCTTTTAAACANACGGCAAAGGNGTCCTTAATTCATTAACCTTTTGGNCAAACGGTTGGCACATTCCAGAAAACTCGGGGCACGGCCTAAAAGCCAAATTGGCCCAACCTTTTCCAAAACTAACGCGTTTCGCCAGAAATTNGCACNTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4380#0 ATGTTGATCCTAGCTACAAGAAATGAATCGGTTCCAATTTTACGAAAAGCTTTCAAGAAC 60
consensus_4380#1 ------------------------------------------------------------
consensus_4380#0 GCTTCCTACTATAATTTGGCAACGTTTCCGTATGAAAAATATTTTAAACAACTTTGGCTT 120
consensus_4380#1 --------------------------------------------CGAGGCAGATCGGC-- 14
* * * ***
consensus_4380#0 AGTGATGCAAACCCTGACATGATCTCTCCGGAAGTACAACGAAATGTTGACATTTTTATT 180
consensus_4380#1 -ACGNGGGCAACCCTGACATGATCTCTCCGGAAGTACAACGAAATGTTGACATTTTTATT 73
* * ***************************************************
consensus_4380#0 TCCAATTTTGATCAACTATTGAAAGGTGTCGGATGCAAATCATTCCTAGAAGTGCCTCAG 240
consensus_4380#1 TCCAATTTTGATCAACTATTGAAAGGTGTCGGATGCAAATCATTCCTAGAAGTGCCTCAG 133
************************************************************
consensus_4380#0 CTGTGCAAAATCATGGGTATTATATATCAAGACCGCATTCGGAAGCCCAACATTCAGTGG 300
consensus_4380#1 CTGTGCAAAATCATGGGTATTATATATCAAGACCGCATTCGGAAGCCCAACATTCAGTGG 193
************************************************************
consensus_4380#0 CATACAAATTATGAAATTGGCTCCATCTACAATACTTTTCTGCAAAGTCAGTTTGAGAAT 360
consensus_4380#1 CATACAAATTATGAAATTGGCTCCATCTACAATACTTTTCTGCAAAGTCAGTTTGAGAAT 253
************************************************************
consensus_4380#0 ACAGTGCGCGGAAAGTTTGATGAAATGGACAAGCTACACGTGCTGGCTAAAGAACTGATA 420
consensus_4380#1 ACAGTGCGCGGAAAGTTTGATGAAATGGACAAGCTACACGTGCTGGCTAAAGAACTGATA 313
************************************************************
consensus_4380#0 CAAAAAGAATTTTACGCGAAACATTCACAGCTGGCGTGCGAGCTTGAATATAATTGTTGC 480
consensus_4380#1 CAAAAAGAATTTTACGCGAAACATTCACAGCTGGCGTGCGAGCTTGAATATAATTGTTGC 373
************************************************************
consensus_4380#0 AATAATCCCAAGCAGTACGAGCAGATGGCACATTTTGGATTAATAATGATTCAGCTCGAT 540
consensus_4380#1 AATAATCCCAAGCAGTACGAGCAGATGGCACATTTGGGATTAATAATGATTCAGCTCGAT 433
*********************************** ************************
consensus_4380#0 GCTTCGGAGTGTGTCGACTTTATGCATCGCACGGTGATGGAATATTTTCTGGTGCGGAAT 600
consensus_4380#1 GCTTCGGAGTGTGTCGACTTTATGCATCGCACGGTGATGGAATATTA-CTGGTGCGGAAT 492
********************************************** ************
consensus_4380#0 TGCTTATTAGATGATGTCGATAGAGAAATGTTTTTTAACTTTCTTCGGCGCTATTTCTGC 660
consensus_4380#1 TGCTTATTAGATGATGTCGATAGAGAAATGTAA--AAACTTTCTTCGGCGCTATTTCTGC 550
******************************* ************************
consensus_4380#0 GTCTCGCGGGC---AAACATTGCGGATAAGTTTATTGACTTTTTCCTGCACGATTTGAAA 717
consensus_4380#1 GTCTCGCGGGGCAAAAGCATTGCGGATAA---CGGTGACATT--------GGACTT---- 595
********** ** ************ **** ** ** **
consensus_4380#0 TGTCTTACGTCGCACAAAAAGCACATTATTAGCTCATACCTTTACAGCAGCTCTAATATA 777
consensus_4380#1 TATTNNACCNTGCACCGAATTCTNGACAATTGTCCTTACCAGTTCNGCAACGAAATAACA 655
* * ** **** ** * * * * * **** * * *** * * * *
consensus_4380#0 CTTGCAACGTGCATCAGAATGGCGCTAACAATGCCACTTTCATACGTTGCGGATGCTGCT 837
consensus_4380#1 GGCACCATTTTAATCA-AAGGGCTCCCATTAACCCTTTTAAACANACGGCAAAGGN---- 710
* * * **** ** *** * * * ** ** * * ** * *
consensus_4380#0 GTCGGTTGCTCCTAAGGAGTTGCTCCGAAGCGTACATTTCCGCTTTGGAGGTACCAACAA 897
consensus_4380#1 GTCCTTAATTCATTAACCTTTTGGNCAAACGGTTGGC--ACATTCCAGAAAACTCGGGGC 768
*** * ** * * ** * ** ** * * ** *
consensus_4380#0 TCCGCAAGGCAATCAATTCGACGAGAAGAATGAAATCAATCTAAAACGGCTCGGGGAAAG 957
consensus_4380#1 ACGGCCTAAAAGCCAAATTGGCCCAACCTTTTCCA--AAACTAACGCGTTTCGCCAGAAA 826
* ** * *** * * * * * * ** **** ** *** **
consensus_4380#0 GCAGACGATTCTGTTGCTAGAGACGCT 984
consensus_4380#1 TTNG-CACNTCG--------------- 837
* * **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||