cluster # 4389

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Anopheles gambiae
cluster # 4389 cluster # 4389 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4389#0 length = 693 sequences # 2

consensus_4389#1 length = 543 sequences # 1

consensusID : consensus_4389#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 693
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGGAGAATACAATATAAAATGATAAACAATAAGGATGAATGATTGCAGGTAGTAGTGCGCTTTTTAACCAGCAGTGGGTTAAGGAAAGGGAGGGACTAAGCAGAGAAAGGATAATATCCTGCACGAGAGAGAGACTGCGCGCGTGCATGCGTTCAAGAAAGTAGTAGTAGTAGCAAGTGTAAGAAGCATAACCGCAAAACTAAAACAAAACAAACAAAAAAACAACTCTAGCAAACGTGTTCAACGATTATGCGTGTTTAAGGTTAAGTAGAAGCAATAAGATTTTCATGTGGCACGGAAAGGTGTGGAAAAGGGGCACTAGAAAAGCAGATTTTTGGCGGGGCGAATGATGCTGAACGATTCAGATACACGGTGTATACCCGGTTTCAGTTCCGTGGGTTCCTGTAGTTTTTTCCTGCCAATTCGGCTTAGGAAAGGATGGTGAAGAAGTGCTCACGTCGTGGTGTAGTGTACAATTAGATCAAATTTTAGTTTTTTTTTTCCATTCAAGTGCACTTGAACGTGCATCTCTTCACTTTAAAGACAATTTAAATGCGTTCTCTTGTCGCGGTGTTTTTCTCGTTCGGCGTACCTAATTCAATGAAAGTTCACTAAATTTTTAGTACATTTCACGCAACACCTTCGCGCGTGTACCGTTTTTGACCAA]

[+] EMBL BM633829             [CCGCCCACGCGTCCGCCCACGCGTCCGGGAGAATACAATATAAAATGATAAACAATAAGGATGAATGATTGCAGGTAGTAGTGCGCTTTTTAACCAGCAGTGGGTTAAGGAAAGGGAGGGACTAAGCAGAGAAAGGATAATATCCTGCACGAGAGAGAGACTGCGCGCGTGCATGCGTTCAAGAAAGTAGTAGTAGTAGCAAGTGTAAGAAGCATAACCGCAAAACTAAAACAAAACAAACAAAAAAACAACTCTAGCAAACGTGTTCAACGATTATGCGTGTTTAAGGTTAAGTAGAAGCAATAAGATTTTCATGTGGCACGGAAAGGTGTGGAAAAGGGGCACTAGAAAAGCAGATTTTTGGCGGGGCGAATGATGCTGAACGATTCAGATACACGGTGTATACCCGGTTTCAGTTCCGTGGGTTCCTGTAGTTTTTTCCTGCCAATTCGGCTTAGGAAAGGATGGTGAAGAAGTGCTCACGTCGTGGTGTAGTGTACAATTAGATCAAATTTTAGTTTTTTTTTTCCATTCAAGTGCACTTGAACGTGCATCTCTTCACTTTAAAGACAATTTAAATGCGTTCTCTTGTCGCGGTGTTTTTCTCGTTCGGCGTACCTAATTCAATGAAAGTTCACTAAATTTTTAGTACATTTCACGCAACACCTTCGCGCGTGTACCGTTTTTGACCAA]
[+] EMBL BX614017             [                                                                                                                                                                                                                                                                                                                                                                                   AATGATGCTGAACGATTCAGATACACGGTGTATACCCGGTTTCAGTTCCGTGGGTTCCTGTAGTTTTTTCCTGCCAATTCGGCTTAGGAAAGGATGGTGAAGAAGTGCTCACGTCGTGGTGTAGTGTACAATTAGATCAAATTTTAGTTTTTTTTTTCCATTCAAGTGCACTTGAACGTGCATCTCTTCACTTTAAAGACAATTTAAATGCGTTCTCTTGTCGCGGTGTTTT                                                                                          ]




>consensus_4389#0
CCGCCCACGCGTCCGCCCACGCGTCCGGGAGAATACAATATAAAATGATAAACAATAAGG
ATGAATGATTGCAGGTAGTAGTGCGCTTTTTAACCAGCAGTGGGTTAAGGAAAGGGAGGG
ACTAAGCAGAGAAAGGATAATATCCTGCACGAGAGAGAGACTGCGCGCGTGCATGCGTTC
AAGAAAGTAGTAGTAGTAGCAAGTGTAAGAAGCATAACCGCAAAACTAAAACAAAACAAA
CAAAAAAACAACTCTAGCAAACGTGTTCAACGATTATGCGTGTTTAAGGTTAAGTAGAAG
CAATAAGATTTTCATGTGGCACGGAAAGGTGTGGAAAAGGGGCACTAGAAAAGCAGATTT
TTGGCGGGGCGAATGATGCTGAACGATTCAGATACACGGTGTATACCCGGTTTCAGTTCC
GTGGGTTCCTGTAGTTTTTTCCTGCCAATTCGGCTTAGGAAAGGATGGTGAAGAAGTGCT
CACGTCGTGGTGTAGTGTACAATTAGATCAAATTTTAGTTTTTTTTTTCCATTCAAGTGC
ACTTGAACGTGCATCTCTTCACTTTAAAGACAATTTAAATGCGTTCTCTTGTCGCGGTGT
TTTTCTCGTTCGGCGTACCTAATTCAATGAAAGTTCACTAAATTTTTAGTACATTTCACG
CAACACCTTCGCGCGTGTACCGTTTTTGACCAA

consensusID : consensus_4389#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence

                              [CGGGCTCGGCGTCATCTGGTCCATCAACCCGGACAAAGAGTCGAGGAAGCTGGTCTGGAGTCCGCCAGCCAACTGTCGCTATCTGATGAAGCGCTGCCGGTACGGGCTGGTCGAGGGCCAGAAGGACAAGTTTCGATTGTTCACGCTGGCCAACCCGTTCGCGAAGGCGGGCAAGGCGAAGGGTCTGCTGCAGCAGTGGGACCCGGACGCGGGCCGCCTGACGGGGGTGGTCGAGATCGATGAATCGTTGGCCGCGCTGGCGGTACGGGACGACGGGCGGTTCGTGGCGATCGGCACAATGTTCAGCGGCTCGGTGTCGATCTACATCGCGTTCAGCATGCAGCGCGTGCTGCACGTGCCCAATGCACACGCGATGTTTGTCACCGGGCTGGAGTTTCTGCCCGTCACCAACTTCGATGGTCCCGCCATCACGGGCGACACGGAGGCGGCTGTGCTTTCCATCTCTGTCGACAATCGCATCTGCGTTCACTAAATTTTTAGTACATTTCACGCAACACCTTCGCGCGTGTACCGTTTTTGACC]

[+] EMBL BX605703             [CGGGCTCGGCGTCATCTGGTCCATCAACCCGGACAAAGAGTCGAGGAAGCTGGTCTGGAGTCCGCCAGCCAACTGTCGCTATCTGATGAAGCGCTGCCGGTACGGGCTGGTCGAGGGCCAGAAGGACAAGTTTCGATTGTTCACGCTGGCCAACCCGTTCGCGAAGGCGGGCAAGGCGAAGGGTCTGCTGCAGCAGTGGGACCCGGACGCGGGCCGCCTGACGGGGGTGGTCGAGATCGATGAATCGTTGGCCGCGCTGGCGGTACGGGACGACGGGCGGTTCGTGGCGATCGGCACAATGTTCAGCGGCTCGGTGTCGATCTACATCGCGTTCAGCATGCAGCGCGTGCTGCACGTGCCCAATGCACACGCGATGTTTGTCACCGGGCTGGAGTTTCTGCCCGTCACCAACTTCGATGGTCCCGCCATCACGGGCGACACGGAGGCGGCTGTGCTTTCCATCTCTGTCGACAATCGCATCTGCGTTCACTAAATTTTTAGTACATTTCACGCAACACCTTCGCGCGTGTACCGTTTTTGACC]




>consensus_4389#1
CGGGCTCGGCGTCATCTGGTCCATCAACCCGGACAAAGAGTCGAGGAAGCTGGTCTGGAG
TCCGCCAGCCAACTGTCGCTATCTGATGAAGCGCTGCCGGTACGGGCTGGTCGAGGGCCA
GAAGGACAAGTTTCGATTGTTCACGCTGGCCAACCCGTTCGCGAAGGCGGGCAAGGCGAA
GGGTCTGCTGCAGCAGTGGGACCCGGACGCGGGCCGCCTGACGGGGGTGGTCGAGATCGA
TGAATCGTTGGCCGCGCTGGCGGTACGGGACGACGGGCGGTTCGTGGCGATCGGCACAAT
GTTCAGCGGCTCGGTGTCGATCTACATCGCGTTCAGCATGCAGCGCGTGCTGCACGTGCC
CAATGCACACGCGATGTTTGTCACCGGGCTGGAGTTTCTGCCCGTCACCAACTTCGATGG
TCCCGCCATCACGGGCGACACGGAGGCGGCTGTGCTTTCCATCTCTGTCGACAATCGCAT
CTGCGTTCACTAAATTTTTAGTACATTTCACGCAACACCTTCGCGCGTGTACCGTTTTTG
ACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4389#0      CCGCCCACGCGTCCGCCCACGCGTCCGGGAGAATACAATATAAAATGATAAACAATAAGG 60
consensus_4389#1      ------------------------------------------------------------
                                                                                  

consensus_4389#0      ATGAATGATTGCAGGTAGTAGTGCGCTTTTTAACCAGCAGTGGGTTAAGGAAAGGGAGGG 120
consensus_4389#1      ---------------------------------CGGGCTCGGCGTCATCTGGTCCATCAA 27
                                                       *  **   * ** *             

consensus_4389#0      ACTAAGCAGAGAAAGGATAATATCCTGCACGAGAGAGAGACTGCGCGCGTGCATGCGTTC 180
consensus_4389#1      CCCGGACAAAGAGTCGAGGAAG--CTGGTCTGGAGTCCGCCAGC-CAACTGTCGCTATCT 84
                       *    ** ***   **  *    ***  *  ***   * * ** *   **      *  

consensus_4389#0      AAGAAAGTAGTAGTAGTAGCAAGTGTAAGAAGCATAACCGCAAAACTAAAACAAAACAAA 240
consensus_4389#1      GATGAAGCGCTGCCGGTA-CGGGC----------TGGTCG-AGGGCCAGAAGGACAAGTT 132
                       *  ***   *    *** *  *           *   ** *   * * **  * *    

consensus_4389#0      CAAAAAAACAACTCTAGCAAACGTGTTCAACGAT-TATGCGTGTTTAAGGTTAAGTAGAA 299
consensus_4389#1      TCGATTGTTCACGCTGGCCAACCCGTTCGCGAAGGCGGGCAAGGCGAAGGGTCTGCTGCA 192
                         *      ** ** ** ***  ****    *     **  *   **** *  *  * *

consensus_4389#0      GCAATAAGATTTTCATGTGGCACGGAAAGGTGTGGAAAAGGGGCACTAGAAAAGCAGATT 359
consensus_4389#1      GCAGTGGGACCCGGACGCGGGCCG------CCTGACGGGGGTGGTCGAGATCGATGAATC 246
                      *** *  **     * * **  **        **     ** *  * ***       ** 

consensus_4389#0      TTTGGCGGGGCGAATGATGCTGAACGATTCAGATACACGGTGTATACCCGGTTTCAGTTC 419
consensus_4389#1      GTTGGCCGCGCTGGCGGTACGGGACGA--CGGGCGGTTCGTGGCGATCGGCACAATGTTC 304
                       ***** * **    * * * * ****  * *       ***   * * *      ****

consensus_4389#0      CGTGGGTTCCTGTAGTTTTTTCCTGCCAATTCGGCTTAGGAAAGGATGGTGAAGAAGTGC 479
consensus_4389#1      AGCGGCTCGGTGTCGATCTACATCGC--GTTCAGCAT-GCAGCGCGTGCTGCAC--GTGC 359
                       * ** *   *** * * *     **   *** ** * * *  *  ** ** *   ****

consensus_4389#0      TCACGTCGTGGTGTAGTGTACAATTAGATCAAATTTTAGTTTTTTTTTTCCATTCAAGTG 539
consensus_4389#1      CCAATGCACA-CGCGATGTTTGTC---ACCGGGCTGGAGTTTCTGCCCGTCACCA----- 410
                       **   *     *   ***        * *    *  ***** *      **        

consensus_4389#0      CACTTGAACGTGCATCTCTTCACTTTAAAGACAATTTAAATGCGTTCTCTTGTCGCGGTG 599
consensus_4389#1      -ACTTCGATG---GTCCCGCCA--TCACGGGCGACACGGAGGCG----------GCTGTG 454
                       ****  * *    ** *  **  * *  * * *     * ***          ** ***

consensus_4389#0      TTTTTCTCGTTCGGCGTACCTAATTCAATGAAAGTTCACTAAATTTTTAGTACATTTCAC 659
consensus_4389#1      CTTTCCATCTCTGTCGA---CAATCGCATCTGCGTTCACTAAATTTTTAGTACATTTCAC 511
                       *** *   *  * **     ***   **    ***************************

consensus_4389#0      GCAACACCTTCGCGCGTGTACCGTTTTTGACCAA 693
consensus_4389#1      GCAACACCTTCGCGCGTGTACCGTTTTTGACC-- 543
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