These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4407#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 748 fasta sequence [GGCAAGAATCGGCACGNTGGAGGAAAACAGGCTGAGTGATCTCTACCCGACTTTACAAGTTGTTCAGTCGTGTCAAAAATGGTACGACGGAACTCTGTGCACATTTTAATGCTTACATAAAAAAGAAGGGACGAACCATCGTCATAGATCCAGAGAAGGACAAATCGATGGTGCAGGATCTACTGGACTATAAAGACAAAATGGATAACATTGTTAATACATGCTTCGAAAGGAATGAAAAATTCGGAAACTCGCTACGCGAAGCTTTTGAGTACTTCATAAACCAACGATCTAATAAACCGGCAGAATTGATTGCGAAATATGTCGATATGAAATTGCGCGCAGGAAACAAGGAGGCAACCGAAGAAGAGTTAGAACAGATTCTTGATCAAGATAATGGTGCAATTTAGGTTCATTCACGGCGAAGGCACGTGTTCTGAAGCATTTTTGACAAAGAAAGATTTGGCCAAACGCCTGCTAGTTGGCAAGTCTGCTTCAGTTGATGCGGCAAGAACAGGCATGTTNATCCAAACTCAAACAAGGAATGCGGCGGAGGATTCACATCCAAAGCTANGGAAGGGAATGTTCAAGGGATCATGGGAAACTGAGTTCCGTCGACCATTACACTTGTCTAGGCTCTTTTACANNCCAGAAACTCCGGGAACCACCAAGGGAACCTTTCNGGAACACATTCCGAATCTTAAACCTNGTTTAAACAGCTCCTTGGAACAATTGGGGGAATCNCTCG] [+] EMBL BX468128 [GGCAAGAATCGGCACGNTGGAGGAAAACAGGCTGAGTGATCTCTACCCGACTTTACAAGTTGTTCAGTCGTGTCAAAAATGGTACGACGGAACTCTGTGCACATTTTAATGCTTACATAAAAAAGAAGGGACGAACCATCGTCATAGATCCAGAGAAGGACAAATCGATGGTGCAGGATCTACTGGACTATAAAGACAAAATGGATAACATTGTTAATACATGCTTCGAAAGGAATGAAAAATTCGGAAACTCGCTACGCGAAGCTTTTGAGTACTTCATAAACCAACGATCTAATAAACCGGCAGAATTGATTGCGAAATATGTCGATATGAAATTGCGCGCAGGAAACAAGGAGGCAACCGAAGAAGAGTTAGAACAGATTCTTGATCAAGATAATGGTGCAATTTAGGTTCATTCACGGCGAAGGCACGTGTTCTGAAGCATTTTTGACAAAGAAAGATTTGGCCAAACGCCTGCTAGTTGGCAAGTCTGCTTCAGTTGATGCGGCAAGAACAGGCATGTTNATCCAAACTCAAACAAGGAATGCGGCGGAGGATTCACATCCAAAGCTANGGAAGGGAATGTTCAAGGGATCATGGGAAACTGAGTTCCGTCGACCATTACACTTGTCTAGGCTCTTTTACANNCCAGAAACTCCGGGAACCACCAAGGGAACCTTTCNGGAACACATTCCGAATCTTAAACCTNGTTTAAACAGCTCCTTGGAACAATTGGGGGAATCNCTCG] [+] EMBL BM648140 [ ccgCCCGACTTTACAAGTTGTTCAGTCGTGTCAAAAATGGTACGACGGAACTCTGTGCACATTTTAATGCTTACATAAAAAAGAAGGGACGAACCATCGTCATAGATCCAGAGAAGGACAAATCGATGGTGCAGGATCTACTGGACTATAAAGACAAAATGGATAACATTGTTAATACATGCTTCGAAAGGAATGAAAAATTCGGAAACTCGCTACGCGAAGCTTTTGAGTACTTCATAAACCAACGATCTAATAAACCGGCAGAATTGATTGCGAAATATGTCGATATGAAATTGCGCGCAGGAAACAAGGAGGCAACCGAAGAAGAGTTAGAACAGATTCTTGAT AAGATAATGGTGCAATTTAGGTTCATTCACGGC AAGG ACGTGTT TGAAGCATTTT ACAAA AAAGATTTGGCCAAACGCCTGCTAGTTGGCAAGTCTGCTTCAGTTGATGCGG AA AA AAGCATGTT ATCCAAACTCAAACAA GAATGCGGCGGAGGATTCACAT CTAAGCTA GAA GGAATGTTCAA GGAT ATGG AACTGAGT CGT GA CA TA AATT T T GCTTTTTAACAg ] consensusID : consensus_4407#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 315 fasta sequence [GATCGCCCGAGGTGTTATACATGCTTCGAAAGGAATGAAAAATCGGAAACTCGCTACGCGAAGCTTTTGAGTACTTCATAAACCAACGATCTAATAAACCGGCAGAATTGATTGCGAAATATGTCGATATGAAATTGCGCGCAGGAAACAAGGAGGCAACCGAAGAAGAGTTAGAACAGATTCTTGATAAGATAATGGGGTTGGCCAAATTTTTTTAAGGGTTTCCATTCCACGGCAAGGACGTGTTTGAAGCCATTTTACAAAAAAGATTTGGCCCAAACGCCTGCTAGTTGGCAAGTCTGCTTCAGTTGATGC] [+] EMBL AL932376 [GATCGCCCGAGGTGTTATACATGCTTCGAAAGGAATGAAAAATCGGAAACTCGCTACGCGAAGCTTTTGAGTACTTCATAAACCAACGATCTAATAAACCGGCAGAATTGATTGCGAAATATGTCGATATGAAATTGCGCGCAGGAAACAAGGAGGCAACCGAAGAAGAGTTAGAACAGATTCTTGATAAGATAATGGGGTTGGCCAAATTTTTTTAAGGGTTTCCATTCCACGGCAAGGACGTGTTTGAAGCCATTTTACAAAAAAGATTTGGCCCAAACGCCTGCTAGTTGGCAAGTCTGCTTCAGTTGATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4407#0 GGCAAGAATCGGCACGNTGGAGGAAAACAGGCTGAGTGATCTCTACCCGACTTTACAAGT 60 consensus_4407#1 ------------------------------------------------------------ consensus_4407#0 TGTTCAGTCGTGTCAAAAATGGTACGACGGAACTCTGTGCACATTTTAATGCTTACATAA 120 consensus_4407#1 ------------------------------------------------------------ consensus_4407#0 AAAAGAAGGGACGAACCATCGTCATAGATCCAGAGAAGGACAAATCGATGGTGCAGGATC 180 consensus_4407#1 ------------------------------------------------------------ consensus_4407#0 TACTGGACTATAAAGACAAAATGGATAACATTGTTAATACATGCTTCGAAAGGAATGAAA 240 consensus_4407#1 -------------------GATCGCCCGAGGTGTTA-TACATGCTTCGAAAGGAATGAAA 40 ** * ***** *********************** consensus_4407#0 AATTCGGAAACTCGCTACGCGAAGCTTTTGAGTACTTCATAAACCAACGATCTAATAAAC 300 consensus_4407#1 AAT-CGGAAACTCGCTACGCGAAGCTTTTGAGTACTTCATAAACCAACGATCTAATAAAC 99 *** ******************************************************** consensus_4407#0 CGGCAGAATTGATTGCGAAATATGTCGATATGAAATTGCGCGCAGGAAACAAGGAGGCAA 360 consensus_4407#1 CGGCAGAATTGATTGCGAAATATGTCGATATGAAATTGCGCGCAGGAAACAAGGAGGCAA 159 ************************************************************ consensus_4407#0 CCGAAGAAGAGTTAGAACAGATTCTTGATCAAGATAATGGTGCAATTTAGGTTCATTCAC 420 consensus_4407#1 CCGAAGAAGAGTTAGAACAGATTCTTGAT-AAGATAATGGGGTTGGCCAAATTTTTTTAA 218 ***************************** ********** * * ** ** * consensus_4407#0 GGC-------------GAAGGCACGTGTTCTGAAGCATTTTTGACAAAGAAAGATTTGGC 467 consensus_4407#1 GGGTTTCCATTCCACGGCAAGGACGTGTTTGAAGCCATTTT--ACAAAAAAGATTTGGCC 276 ** * * * ******* * ****** ***** ** ** * * consensus_4407#0 CAAACGCCTGCTAGTTGGCAAGTCTGCTTCAGTTGATGCGGCAAGAACAGGCATGTTNAT 527 consensus_4407#1 CAAACGCCTGCTAGTTGGCAAGTCTGCTTCAGTTGATGC--------------------- 315 *************************************** consensus_4407#0 CCAAACTCAAACAAGGAATGCGGCGGAGGATTCACATCCAAAGCTANGGAAGGGAATGTT 587 consensus_4407#1 ------------------------------------------------------------ consensus_4407#0 CAAGGGATCATGGGAAACTGAGTTCCGTCGACCATTACACTTGTCTAGGCTCTTTTACAN 647 consensus_4407#1 ------------------------------------------------------------ consensus_4407#0 NCCAGAAACTCCGGGAACCACCAAGGGAACCTTTCNGGAACACATTCCGAATCTTAAACC 707 consensus_4407#1 ------------------------------------------------------------ consensus_4407#0 TNGTTTAAACAGCTCCTTGGAACAATTGGGGGAATCNCTCG 748 consensus_4407#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||