cluster # 4407

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Anopheles gambiae
cluster # 4407 cluster # 4407 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4407#0 length = 748 sequences # 2

consensus_4407#1 length = 315 sequences # 1

consensusID : consensus_4407#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 748
fasta sequence

                              [GGCAAGAATCGGCACGNTGGAGGAAAACAGGCTGAGTGATCTCTACCCGACTTTACAAGTTGTTCAGTCGTGTCAAAAATGGTACGACGGAACTCTGTGCACATTTTAATGCTTACATAAAAAAGAAGGGACGAACCATCGTCATAGATCCAGAGAAGGACAAATCGATGGTGCAGGATCTACTGGACTATAAAGACAAAATGGATAACATTGTTAATACATGCTTCGAAAGGAATGAAAAATTCGGAAACTCGCTACGCGAAGCTTTTGAGTACTTCATAAACCAACGATCTAATAAACCGGCAGAATTGATTGCGAAATATGTCGATATGAAATTGCGCGCAGGAAACAAGGAGGCAACCGAAGAAGAGTTAGAACAGATTCTTGATCAAGATAATGGTGCAATTTAGGTTCATTCACGGCGAAGGCACGTGTTCTGAAGCATTTTTGACAAAGAAAGATTTGGCCAAACGCCTGCTAGTTGGCAAGTCTGCTTCAGTTGATGCGGCAAGAACAGGCATGTTNATCCAAACTCAAACAAGGAATGCGGCGGAGGATTCACATCCAAAGCTANGGAAGGGAATGTTCAAGGGATCATGGGAAACTGAGTTCCGTCGACCATTACACTTGTCTAGGCTCTTTTACANNCCAGAAACTCCGGGAACCACCAAGGGAACCTTTCNGGAACACATTCCGAATCTTAAACCTNGTTTAAACAGCTCCTTGGAACAATTGGGGGAATCNCTCG]

[+] EMBL BX468128             [GGCAAGAATCGGCACGNTGGAGGAAAACAGGCTGAGTGATCTCTACCCGACTTTACAAGTTGTTCAGTCGTGTCAAAAATGGTACGACGGAACTCTGTGCACATTTTAATGCTTACATAAAAAAGAAGGGACGAACCATCGTCATAGATCCAGAGAAGGACAAATCGATGGTGCAGGATCTACTGGACTATAAAGACAAAATGGATAACATTGTTAATACATGCTTCGAAAGGAATGAAAAATTCGGAAACTCGCTACGCGAAGCTTTTGAGTACTTCATAAACCAACGATCTAATAAACCGGCAGAATTGATTGCGAAATATGTCGATATGAAATTGCGCGCAGGAAACAAGGAGGCAACCGAAGAAGAGTTAGAACAGATTCTTGATCAAGATAATGGTGCAATTTAGGTTCATTCACGGCGAAGGCACGTGTTCTGAAGCATTTTTGACAAAGAAAGATTTGGCCAAACGCCTGCTAGTTGGCAAGTCTGCTTCAGTTGATGCGGCAAGAACAGGCATGTTNATCCAAACTCAAACAAGGAATGCGGCGGAGGATTCACATCCAAAGCTANGGAAGGGAATGTTCAAGGGATCATGGGAAACTGAGTTCCGTCGACCATTACACTTGTCTAGGCTCTTTTACANNCCAGAAACTCCGGGAACCACCAAGGGAACCTTTCNGGAACACATTCCGAATCTTAAACCTNGTTTAAACAGCTCCTTGGAACAATTGGGGGAATCNCTCG]
[+] EMBL BM648140             [                                          ccgCCCGACTTTACAAGTTGTTCAGTCGTGTCAAAAATGGTACGACGGAACTCTGTGCACATTTTAATGCTTACATAAAAAAGAAGGGACGAACCATCGTCATAGATCCAGAGAAGGACAAATCGATGGTGCAGGATCTACTGGACTATAAAGACAAAATGGATAACATTGTTAATACATGCTTCGAAAGGAATGAAAAATTCGGAAACTCGCTACGCGAAGCTTTTGAGTACTTCATAAACCAACGATCTAATAAACCGGCAGAATTGATTGCGAAATATGTCGATATGAAATTGCGCGCAGGAAACAAGGAGGCAACCGAAGAAGAGTTAGAACAGATTCTTGAT AAGATAATGGTGCAATTTAGGTTCATTCACGGC AAGG ACGTGTT TGAAGCATTTT  ACAAA AAAGATTTGGCCAAACGCCTGCTAGTTGGCAAGTCTGCTTCAGTTGATGCGG AA AA AAGCATGTT ATCCAAACTCAAACAA GAATGCGGCGGAGGATTCACAT CTAAGCTA  GAA GGAATGTTCAA GGAT ATGG  AACTGAGT  CGT GA CA TA AATT T T  GCTTTTTAACAg                                                                                                     ]




>consensus_4407#0
GGCAAGAATCGGCACGNTGGAGGAAAACAGGCTGAGTGATCTCTACCCGACTTTACAAGT
TGTTCAGTCGTGTCAAAAATGGTACGACGGAACTCTGTGCACATTTTAATGCTTACATAA
AAAAGAAGGGACGAACCATCGTCATAGATCCAGAGAAGGACAAATCGATGGTGCAGGATC
TACTGGACTATAAAGACAAAATGGATAACATTGTTAATACATGCTTCGAAAGGAATGAAA
AATTCGGAAACTCGCTACGCGAAGCTTTTGAGTACTTCATAAACCAACGATCTAATAAAC
CGGCAGAATTGATTGCGAAATATGTCGATATGAAATTGCGCGCAGGAAACAAGGAGGCAA
CCGAAGAAGAGTTAGAACAGATTCTTGATCAAGATAATGGTGCAATTTAGGTTCATTCAC
GGCGAAGGCACGTGTTCTGAAGCATTTTTGACAAAGAAAGATTTGGCCAAACGCCTGCTA
GTTGGCAAGTCTGCTTCAGTTGATGCGGCAAGAACAGGCATGTTNATCCAAACTCAAACA
AGGAATGCGGCGGAGGATTCACATCCAAAGCTANGGAAGGGAATGTTCAAGGGATCATGG
GAAACTGAGTTCCGTCGACCATTACACTTGTCTAGGCTCTTTTACANNCCAGAAACTCCG
GGAACCACCAAGGGAACCTTTCNGGAACACATTCCGAATCTTAAACCTNGTTTAAACAGC
TCCTTGGAACAATTGGGGGAATCNCTCG

consensusID : consensus_4407#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 315
fasta sequence

                              [GATCGCCCGAGGTGTTATACATGCTTCGAAAGGAATGAAAAATCGGAAACTCGCTACGCGAAGCTTTTGAGTACTTCATAAACCAACGATCTAATAAACCGGCAGAATTGATTGCGAAATATGTCGATATGAAATTGCGCGCAGGAAACAAGGAGGCAACCGAAGAAGAGTTAGAACAGATTCTTGATAAGATAATGGGGTTGGCCAAATTTTTTTAAGGGTTTCCATTCCACGGCAAGGACGTGTTTGAAGCCATTTTACAAAAAAGATTTGGCCCAAACGCCTGCTAGTTGGCAAGTCTGCTTCAGTTGATGC]

[+] EMBL AL932376             [GATCGCCCGAGGTGTTATACATGCTTCGAAAGGAATGAAAAATCGGAAACTCGCTACGCGAAGCTTTTGAGTACTTCATAAACCAACGATCTAATAAACCGGCAGAATTGATTGCGAAATATGTCGATATGAAATTGCGCGCAGGAAACAAGGAGGCAACCGAAGAAGAGTTAGAACAGATTCTTGATAAGATAATGGGGTTGGCCAAATTTTTTTAAGGGTTTCCATTCCACGGCAAGGACGTGTTTGAAGCCATTTTACAAAAAAGATTTGGCCCAAACGCCTGCTAGTTGGCAAGTCTGCTTCAGTTGATGC]




>consensus_4407#1
GATCGCCCGAGGTGTTATACATGCTTCGAAAGGAATGAAAAATCGGAAACTCGCTACGCG
AAGCTTTTGAGTACTTCATAAACCAACGATCTAATAAACCGGCAGAATTGATTGCGAAAT
ATGTCGATATGAAATTGCGCGCAGGAAACAAGGAGGCAACCGAAGAAGAGTTAGAACAGA
TTCTTGATAAGATAATGGGGTTGGCCAAATTTTTTTAAGGGTTTCCATTCCACGGCAAGG
ACGTGTTTGAAGCCATTTTACAAAAAAGATTTGGCCCAAACGCCTGCTAGTTGGCAAGTC
TGCTTCAGTTGATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4407#0      GGCAAGAATCGGCACGNTGGAGGAAAACAGGCTGAGTGATCTCTACCCGACTTTACAAGT 60
consensus_4407#1      ------------------------------------------------------------
                                                                                  

consensus_4407#0      TGTTCAGTCGTGTCAAAAATGGTACGACGGAACTCTGTGCACATTTTAATGCTTACATAA 120
consensus_4407#1      ------------------------------------------------------------
                                                                                  

consensus_4407#0      AAAAGAAGGGACGAACCATCGTCATAGATCCAGAGAAGGACAAATCGATGGTGCAGGATC 180
consensus_4407#1      ------------------------------------------------------------
                                                                                  

consensus_4407#0      TACTGGACTATAAAGACAAAATGGATAACATTGTTAATACATGCTTCGAAAGGAATGAAA 240
consensus_4407#1      -------------------GATCGCCCGAGGTGTTA-TACATGCTTCGAAAGGAATGAAA 40
                                          ** *       ***** ***********************

consensus_4407#0      AATTCGGAAACTCGCTACGCGAAGCTTTTGAGTACTTCATAAACCAACGATCTAATAAAC 300
consensus_4407#1      AAT-CGGAAACTCGCTACGCGAAGCTTTTGAGTACTTCATAAACCAACGATCTAATAAAC 99
                      *** ********************************************************

consensus_4407#0      CGGCAGAATTGATTGCGAAATATGTCGATATGAAATTGCGCGCAGGAAACAAGGAGGCAA 360
consensus_4407#1      CGGCAGAATTGATTGCGAAATATGTCGATATGAAATTGCGCGCAGGAAACAAGGAGGCAA 159
                      ************************************************************

consensus_4407#0      CCGAAGAAGAGTTAGAACAGATTCTTGATCAAGATAATGGTGCAATTTAGGTTCATTCAC 420
consensus_4407#1      CCGAAGAAGAGTTAGAACAGATTCTTGAT-AAGATAATGGGGTTGGCCAAATTTTTTTAA 218
                      ***************************** ********** *      *  **  ** * 

consensus_4407#0      GGC-------------GAAGGCACGTGTTCTGAAGCATTTTTGACAAAGAAAGATTTGGC 467
consensus_4407#1      GGGTTTCCATTCCACGGCAAGGACGTGTTTGAAGCCATTTT--ACAAAAAAGATTTGGCC 276
                      **              * * * *******   *  ******  ***** **   ** * *

consensus_4407#0      CAAACGCCTGCTAGTTGGCAAGTCTGCTTCAGTTGATGCGGCAAGAACAGGCATGTTNAT 527
consensus_4407#1      CAAACGCCTGCTAGTTGGCAAGTCTGCTTCAGTTGATGC--------------------- 315
                      ***************************************                     

consensus_4407#0      CCAAACTCAAACAAGGAATGCGGCGGAGGATTCACATCCAAAGCTANGGAAGGGAATGTT 587
consensus_4407#1      ------------------------------------------------------------
                                                                                  

consensus_4407#0      CAAGGGATCATGGGAAACTGAGTTCCGTCGACCATTACACTTGTCTAGGCTCTTTTACAN 647
consensus_4407#1      ------------------------------------------------------------
                                                                                  

consensus_4407#0      NCCAGAAACTCCGGGAACCACCAAGGGAACCTTTCNGGAACACATTCCGAATCTTAAACC 707
consensus_4407#1      ------------------------------------------------------------
                                                                                  

consensus_4407#0      TNGTTTAAACAGCTCCTTGGAACAATTGGGGGAATCNCTCG 748
consensus_4407#1      -----------------------------------------