These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4410#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 965 fasta sequence [GTTTACGCTTATCTTTACGCTGGAGCGCCGCGCACACGCCAAAGGAAGTGAGTGATAGTGATCTATTTAGGGGCGGTAGGCGGTAGAGAAGAAACGCGCACACGGAAAAAAAATCATTGAAAACAAGAAACAAACCCCGTCGAACAAGTGTTGCGCGATATAATACCGCCAAAGTGCGAGAAGCAAGAACTGATAAGGAAACAAGGGG-AAGAGCATGATCGCTTCCCAGAGACTTGGTGTGCTCGAGACAGAAGCCAGCAGACAACATAATTATGCTGCTGCCGACGGTGAATCGATTGCCGAGGATTGGCTGTTGCCTAACGCTGGTCGCTCTGTCGGTGCTGCTGCTACACGCCCGTTCTGGGAGCGGCGCCGTCGTGACGGACCACGATCGGGTGGTGACGTGCTACATCTCCACCTGGGCCGTTTACCGCACCGGCAGCGCGTCCTACCCGCTCGACGCCTTCGATCCCACCCTCTGTACGCATGCCATCTACGCGTTTGCCGGGCTGGATGAGGAGAAGAATGCCATCAAATCGCTGGATGCCTGGCAGGACCTGAAAGACAACTACGGCAAGGGTGGGTACGAAAAGCTGACCGGCATGANGGCCGCACATCCCCATCTGAAGGTGCTGCTCGCCATCGGTGGCTGGAACGANGGATCGGAGAAGTACTCCAACCTGGCGGCGAACCCGGAACGGCGCCAAGCGTTCGTGAAGAATGCGCTCGACTTTGTCAAACAGTACGGGTTCGATGGGCTTGACCTGGACTGGGAGTATCCGACGCAGCGCGGCGGCAAACCGGCCGATCGGGAAAACTTTGTGGCGCTCGTGCGCGAACTGAGCCAGCTGTTCCGCAAGCACAACCTGCTGCTAACGTCCGCGTTCGGTGCGGGCAANGACACGATCGATTCGGCGTACGACGTGAANGCGCTCTCGAAAGTACCTGGAATTTTCTGCACATCA] [+] EMBL BX622762 [GTTTACGCTTATCTTTACGCTGGAGCGCCGCGCACACGCCAAAGGAAGTGAGTGATAGTGATCTATTTAGGGGCGGTAGGCGGTAGAGAAGAAACGCGCACACGGAAAAAAAATCATTGAAAACAAGAAACAAACCCCGTCGAACAAGTGTTGCGCGATATAATACCGCCAAAGTGCGAGAAGCAAGAACTGATAAGGAAACAAGGGG AAGAGCATGATCGCTTCCCAGAGACTTGGTGTGCTCGAGACAGAAGCCAGCAGACAACATAATTATGCTGCTGCCGACGGTGAATCGATTGCCGAGGATTGGCTGTTGCCTAACGCTGGTCGCTCTGTCGGTGCTGCTGCTACACGCCCGTTCTGGGAGCGGCGCCGTCGTGACGGACCACGATCGGGTGGTGACGTGCTACATCTCCACCTGGGCCGTTTACCGCACCGGCAGCGCGTCCTACCCGCTCGACGCCTTCGATCCCACCCTCTGTACGCATGCCATCTACGCGTTTGCCGGGCTGGATGAGGAGAAGAATGCCATCAAATCGCTGGATGCCTGGCAGGACCTGAAAGACAACTACGGCAAGGGTGGGTACGAAAAGCTGACCGGCATGANGGCCGCACATCCCCATCTGAAGGTGCTGCTCGCCATCGGTGGCTGGAACGANGGATCGGAGAAGTACTCCAACCTGGCGGCGAACCCGG ] [+] EMBL BX623754 [ AGAACTGATAAGGAAACAAGGGGTAAGAGCAAGATCGCTTCCCAGAGACTTGGTGTGCTCGAGACAGAAGCCAGCAGACAACATAATTATGCTGCTGCCGACGGTGAATCGATTGCCGAGGATTGGCTGTTGCCTAACGCTGGTCGCTCTGTCGGTGCTGCTGCTACACGCCCGTTCTGGGAGCGGCGCCGTCGTGACGGACCACGATCGGGTGGTGACGTGCTACATCTCCACCTGGGCCGTTTACCGCACCGGCAGCGCGTCCTACCCGCTCGACGCCTTCGATCCCACCCTCTGTACGCATGCCATCTACGCGTTTGCCGGGCTGGATGAGGAGAAGAATGCCATCAAATCGCTGGATGCCTGGCAGGACCTGAAAGACAACTACGGCAAGGGTGGGTACGAAAAGCTGACCGGCATGAGGGCCGCACATCCCCATCTGAAGGTGCTGCTCGCCATCGGTGGCTGGAACGAGGGATCGGAGAAGTACTCCAACCTGGCGGCGAACCCGGAACGGCGCCAAGCGTTCGTGAAGAATGCGCTCGACTTTGTCAAACAGTACGGGTTCGATGGGCTTGACCTGGACTGGGAGTATCCGACGCAGCGCGGCGGCAAACCGGCCGATCGGGAAAACTTTGTGGCGCTCGTGCGCGAACTGAGCCAGCTGTTCCGCAAGCACAACCTGCTGCTAACGTCCGCGTTCGGTGCGGGCAANGACACGATCGATTCGGCGTACGACGTGAANGCGCTCTCGAAAGTACCTGGAATTTTCTGCACATCA] consensusID : consensus_4410#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence [GCAACTGCCGTGACGGTCGGTCCGCACTACACATTCGCGTCCATCACAAAGCGATCACCTTCCATCCCCTTCCCTTTGCCAACATTCGACCAACATTCGAAAGCGCGTTCGTTGCTTGGTGCGCGTTGATGTCGTGGCGACTTCTTTGCGCGAACTGAGCCAGCTGTTCCGCAAGCACAACCTGCTGCTAACGTCCGCGTTCGGTGCGGGCAAGGACACGATCGATTCGGCGTACGACGTGAAGGCGCTCTCGAAGTACCTGGACTTTCTGCACATCATGTGCTACGACTACAAGGGCAGCTGGGACGGACGGATCGGGCCGAACGCACCACTAACCAGCCGCGACTTCCTGAACGTGGAGTACTCGATCGAGCATCTGCTCGAGCTGGGCGCACCGGCCAGCAAGCTCGTGCTGGGGCTCCCATTCTACGGCCGCACCTTCGTCAGCCCGATGGCGAAGGCCCGGTTGGGCGACACGTCCGACAAGGTCGGGTTTGCCGGGCCCTCCACCAAAGAGAACGGGTTCATGGGCTACAACGAGGTGTGCGAGGAGCTGAAGCGCAACCCGGACGACTGGGACGCTCGAGTG] [+] EMBL BX610208 [GCAACTGCCGTGACGGTCGGTCCGCACTACACATTCGCGTCCATCACAAAGCGATCACCTTCCATCCCCTTCCCTTTGCCAACATTCGACCAACATTCGAAAGCGCGTTCGTTGCTTGGTGCGCGTTGATGTCGTGGCGACTTCTTTGCGCGAACTGAGCCAGCTGTTCCGCAAGCACAACCTGCTGCTAACGTCCGCGTTCGGTGCGGGCAAGGACACGATCGATTCGGCGTACGACGTGAAGGCGCTCTCGAAGTACCTGGACTTTCTGCACATCATGTGCTACGACTACAAGGGCAGCTGGGACGGACGGATCGGGCCGAACGCACCACTAACCAGCCGCGACTTCCTGAACGTGGAGTACTCGATCGAGCATCTGCTCGAGCTGGGCGCACCGGCCAGCAAGCTCGTGCTGGGGCTCCCATTCTACGGCCGCACCTTCGTCAGCCCGATGGCGAAGGCCCGGTTGGGCGACACGTCCGACAAGGTCGGGTTTGCCGGGCCCTCCACCAAAGAGAACGGGTTCATGGGCTACAACGAGGTGTGCGAGGAGCTGAAGCGCAACCCGGACGACTGGGACGCTCGAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4410#0 GTTTACGCTTATCTTTACGCTGGAGCGCCGCGCACACGCCAAAGGAAGTGAGTGATAGTG 60 consensus_4410#1 ------------------------------------------------------------ consensus_4410#0 ATCTATTTAGGGGCGGTAGGCGGTAGAGAAGAAACGCGCACACGGAAAAAAAATCATTGA 120 consensus_4410#1 ------------------------------------------------------------ consensus_4410#0 AAACAAGAAACAAACCCCGTCGAACAAGTGTTGCGCGATATAATACCGCCAAAGTGCGAG 180 consensus_4410#1 ------------------------------------------------------------ consensus_4410#0 AAGCAAGAACTGATAAGGAAACAAGGGGAAGAGCATGATCGCTTCCCAGAGACTTGGTGT 240 consensus_4410#1 --------------------GCAACTGCCGTGAC--GGTCGGTCCGCACTACACATTCGC 38 *** * * * *** * * ** * consensus_4410#0 GCTCGAGACAGAAGCCAGCAGACAACATAATTATGCTGCTGCCGACGGTGAATCGATTGC 300 consensus_4410#1 GTCCATCACA-AAGCGATCACCTTCCATCCCCTTCCCTTTGCCAACATTCGACCAACATT 97 * * *** **** * ** *** * * **** ** * * * * consensus_4410#0 CGAGGATTGGCT-GTTGCCTAACGCTGGTCGCTCTGTCGGTGCTGCTGCTACACGCCCGT 359 consensus_4410#1 CGAAAGCGCGTTCGTTGCTTGGTGCGCGTTGAT--GTCGTGGCGACTTCTTTGCGCGAAC 155 *** * * ***** * ** ** * * **** ** ** ** *** consensus_4410#0 TCTGGGAGCGGCGCCGTCGTGACGGACCACGATCGGGTGGTGACGTGCTACATCTCCACC 419 consensus_4410#1 TGAGCCAGCTGTTCCGC-------AAGCACAACCTGCTGCTAACGT-CCGCGT-TCGGTG 206 * * *** * *** * *** * * * ** * **** * * * ** consensus_4410#0 TGGGCCGTTTACCGCACCGGCAGCGCGTCCTACCCGCTCGACGCCTTCGATCCCACCCT- 478 consensus_4410#1 CGGGCAAGG-ACACGATCGATTCGGCGTACGACGTGAA-GGCGCTCTCGAAGTACCTGGA 264 **** ** * ** **** * ** * * *** **** * consensus_4410#0 CTGTACGCATGCCATCTAC-GCGTTTGCCGGGCTGGATGAGGAGAA-GAATGCCATCAAA 536 consensus_4410#1 CTTTCTGCACATCATGTGCTACGACTACAAGGGCAGCTGGGACGGACGGATCGGGCCGAA 324 ** * *** *** * * ** * * ** * ** * * * * ** * ** consensus_4410#0 T-CGCTGGATGCCTGGCAGGACCTGAAAGACAACTACGGCAAGGGTGGGTACGAAAAGCT 595 consensus_4410#1 CGCACCACTAACCAGCCGCGACTTCCTGAACGTGGAGTACTCGATCGAGCATCTGCTCGA 384 * * ** * * *** * ** * * * * * * consensus_4410#0 GACCGGCATGANGGCCGCACATCCCCATCTGAAGGTGCTGCTCGCCATCGGTGGCTGGAA 655 consensus_4410#1 GCTGGGCGCACCGGCCAGCAAGCTCGTGCTGGGGCTCCCATTCTACGGCCGCACCTTCGT 444 * *** **** * * * *** * * * ** * * * ** consensus_4410#0 CGANGGATCGGAGAAGTACTCCAACCTGGCGGCGAACCCGGAACGGCGCCAAGCGTTCGT 715 consensus_4410#1 CAGCCCGATGGCGAAG--GCCCGGTTGGGCGACACGTCCGACAAGGTC----GGGTTTGC 498 * ** **** ** **** * *** * ** * *** * consensus_4410#0 GAAGAATGCGCTCGACTTTGTCAAACAGTACGGGTTCGATGGGCTTGACCTGGACTGGGA 775 consensus_4410#1 ------CGGGCC---CTCCACCAAAGAGAACGGGTTC-ATGGGCTACAAC-------GAG 541 * ** ** **** ** ******** ******* * * * consensus_4410#0 GTATCCGACGCAGCGCGGCGGCAAACCGGCCGATCGGGAAAACTTTGTGGCGCTCGTGCG 835 consensus_4410#1 GTGTGCGAGGAGCTGAAGCG-CAACCCGGACGACTGGGACGCTCGAGTG----------- 589 ** * *** * * *** *** **** *** **** *** consensus_4410#0 CGAACTGAGCCAGCTGTTCCGCAAGCACAACCTGCTGCTAACGTCCGCGTTCGGTGCGGG 895 consensus_4410#1 ------------------------------------------------------------ consensus_4410#0 CAANGACACGATCGATTCGGCGTACGACGTGAANGCGCTCTCGAAAGTACCTGGAATTTT 955 consensus_4410#1 ------------------------------------------------------------ consensus_4410#0 CTGCACATCA 965 consensus_4410#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||