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Anopheles gambiae
cluster # 4410 cluster # 4410       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4410#0 length = 965 sequences # 2  
consensus_4410#1 length = 589 sequences # 1  

consensusID : consensus_4410#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 965
fasta sequence
                              [GTTTACGCTTATCTTTACGCTGGAGCGCCGCGCACACGCCAAAGGAAGTGAGTGATAGTGATCTATTTAGGGGCGGTAGGCGGTAGAGAAGAAACGCGCACACGGAAAAAAAATCATTGAAAACAAGAAACAAACCCCGTCGAACAAGTGTTGCGCGATATAATACCGCCAAAGTGCGAGAAGCAAGAACTGATAAGGAAACAAGGGG-AAGAGCATGATCGCTTCCCAGAGACTTGGTGTGCTCGAGACAGAAGCCAGCAGACAACATAATTATGCTGCTGCCGACGGTGAATCGATTGCCGAGGATTGGCTGTTGCCTAACGCTGGTCGCTCTGTCGGTGCTGCTGCTACACGCCCGTTCTGGGAGCGGCGCCGTCGTGACGGACCACGATCGGGTGGTGACGTGCTACATCTCCACCTGGGCCGTTTACCGCACCGGCAGCGCGTCCTACCCGCTCGACGCCTTCGATCCCACCCTCTGTACGCATGCCATCTACGCGTTTGCCGGGCTGGATGAGGAGAAGAATGCCATCAAATCGCTGGATGCCTGGCAGGACCTGAAAGACAACTACGGCAAGGGTGGGTACGAAAAGCTGACCGGCATGANGGCCGCACATCCCCATCTGAAGGTGCTGCTCGCCATCGGTGGCTGGAACGANGGATCGGAGAAGTACTCCAACCTGGCGGCGAACCCGGAACGGCGCCAAGCGTTCGTGAAGAATGCGCTCGACTTTGTCAAACAGTACGGGTTCGATGGGCTTGACCTGGACTGGGAGTATCCGACGCAGCGCGGCGGCAAACCGGCCGATCGGGAAAACTTTGTGGCGCTCGTGCGCGAACTGAGCCAGCTGTTCCGCAAGCACAACCTGCTGCTAACGTCCGCGTTCGGTGCGGGCAANGACACGATCGATTCGGCGTACGACGTGAANGCGCTCTCGAAAGTACCTGGAATTTTCTGCACATCA]

[+] EMBL BX622762             [GTTTACGCTTATCTTTACGCTGGAGCGCCGCGCACACGCCAAAGGAAGTGAGTGATAGTGATCTATTTAGGGGCGGTAGGCGGTAGAGAAGAAACGCGCACACGGAAAAAAAATCATTGAAAACAAGAAACAAACCCCGTCGAACAAGTGTTGCGCGATATAATACCGCCAAAGTGCGAGAAGCAAGAACTGATAAGGAAACAAGGGG AAGAGCATGATCGCTTCCCAGAGACTTGGTGTGCTCGAGACAGAAGCCAGCAGACAACATAATTATGCTGCTGCCGACGGTGAATCGATTGCCGAGGATTGGCTGTTGCCTAACGCTGGTCGCTCTGTCGGTGCTGCTGCTACACGCCCGTTCTGGGAGCGGCGCCGTCGTGACGGACCACGATCGGGTGGTGACGTGCTACATCTCCACCTGGGCCGTTTACCGCACCGGCAGCGCGTCCTACCCGCTCGACGCCTTCGATCCCACCCTCTGTACGCATGCCATCTACGCGTTTGCCGGGCTGGATGAGGAGAAGAATGCCATCAAATCGCTGGATGCCTGGCAGGACCTGAAAGACAACTACGGCAAGGGTGGGTACGAAAAGCTGACCGGCATGANGGCCGCACATCCCCATCTGAAGGTGCTGCTCGCCATCGGTGGCTGGAACGANGGATCGGAGAAGTACTCCAACCTGGCGGCGAACCCGG                                                                                                                                                                                                                                                                             ]
[+] EMBL BX623754             [                                                                                                                                                                                         AGAACTGATAAGGAAACAAGGGGTAAGAGCAAGATCGCTTCCCAGAGACTTGGTGTGCTCGAGACAGAAGCCAGCAGACAACATAATTATGCTGCTGCCGACGGTGAATCGATTGCCGAGGATTGGCTGTTGCCTAACGCTGGTCGCTCTGTCGGTGCTGCTGCTACACGCCCGTTCTGGGAGCGGCGCCGTCGTGACGGACCACGATCGGGTGGTGACGTGCTACATCTCCACCTGGGCCGTTTACCGCACCGGCAGCGCGTCCTACCCGCTCGACGCCTTCGATCCCACCCTCTGTACGCATGCCATCTACGCGTTTGCCGGGCTGGATGAGGAGAAGAATGCCATCAAATCGCTGGATGCCTGGCAGGACCTGAAAGACAACTACGGCAAGGGTGGGTACGAAAAGCTGACCGGCATGAGGGCCGCACATCCCCATCTGAAGGTGCTGCTCGCCATCGGTGGCTGGAACGAGGGATCGGAGAAGTACTCCAACCTGGCGGCGAACCCGGAACGGCGCCAAGCGTTCGTGAAGAATGCGCTCGACTTTGTCAAACAGTACGGGTTCGATGGGCTTGACCTGGACTGGGAGTATCCGACGCAGCGCGGCGGCAAACCGGCCGATCGGGAAAACTTTGTGGCGCTCGTGCGCGAACTGAGCCAGCTGTTCCGCAAGCACAACCTGCTGCTAACGTCCGCGTTCGGTGCGGGCAANGACACGATCGATTCGGCGTACGACGTGAANGCGCTCTCGAAAGTACCTGGAATTTTCTGCACATCA]


>consensus_4410#0 GTTTACGCTTATCTTTACGCTGGAGCGCCGCGCACACGCCAAAGGAAGTGAGTGATAGTG ATCTATTTAGGGGCGGTAGGCGGTAGAGAAGAAACGCGCACACGGAAAAAAAATCATTGA AAACAAGAAACAAACCCCGTCGAACAAGTGTTGCGCGATATAATACCGCCAAAGTGCGAG AAGCAAGAACTGATAAGGAAACAAGGGGAAGAGCATGATCGCTTCCCAGAGACTTGGTGT GCTCGAGACAGAAGCCAGCAGACAACATAATTATGCTGCTGCCGACGGTGAATCGATTGC CGAGGATTGGCTGTTGCCTAACGCTGGTCGCTCTGTCGGTGCTGCTGCTACACGCCCGTT CTGGGAGCGGCGCCGTCGTGACGGACCACGATCGGGTGGTGACGTGCTACATCTCCACCT GGGCCGTTTACCGCACCGGCAGCGCGTCCTACCCGCTCGACGCCTTCGATCCCACCCTCT GTACGCATGCCATCTACGCGTTTGCCGGGCTGGATGAGGAGAAGAATGCCATCAAATCGC TGGATGCCTGGCAGGACCTGAAAGACAACTACGGCAAGGGTGGGTACGAAAAGCTGACCG GCATGANGGCCGCACATCCCCATCTGAAGGTGCTGCTCGCCATCGGTGGCTGGAACGANG GATCGGAGAAGTACTCCAACCTGGCGGCGAACCCGGAACGGCGCCAAGCGTTCGTGAAGA ATGCGCTCGACTTTGTCAAACAGTACGGGTTCGATGGGCTTGACCTGGACTGGGAGTATC CGACGCAGCGCGGCGGCAAACCGGCCGATCGGGAAAACTTTGTGGCGCTCGTGCGCGAAC TGAGCCAGCTGTTCCGCAAGCACAACCTGCTGCTAACGTCCGCGTTCGGTGCGGGCAANG ACACGATCGATTCGGCGTACGACGTGAANGCGCTCTCGAAAGTACCTGGAATTTTCTGCA CATCA



consensusID : consensus_4410#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 589
fasta sequence
                              [GCAACTGCCGTGACGGTCGGTCCGCACTACACATTCGCGTCCATCACAAAGCGATCACCTTCCATCCCCTTCCCTTTGCCAACATTCGACCAACATTCGAAAGCGCGTTCGTTGCTTGGTGCGCGTTGATGTCGTGGCGACTTCTTTGCGCGAACTGAGCCAGCTGTTCCGCAAGCACAACCTGCTGCTAACGTCCGCGTTCGGTGCGGGCAAGGACACGATCGATTCGGCGTACGACGTGAAGGCGCTCTCGAAGTACCTGGACTTTCTGCACATCATGTGCTACGACTACAAGGGCAGCTGGGACGGACGGATCGGGCCGAACGCACCACTAACCAGCCGCGACTTCCTGAACGTGGAGTACTCGATCGAGCATCTGCTCGAGCTGGGCGCACCGGCCAGCAAGCTCGTGCTGGGGCTCCCATTCTACGGCCGCACCTTCGTCAGCCCGATGGCGAAGGCCCGGTTGGGCGACACGTCCGACAAGGTCGGGTTTGCCGGGCCCTCCACCAAAGAGAACGGGTTCATGGGCTACAACGAGGTGTGCGAGGAGCTGAAGCGCAACCCGGACGACTGGGACGCTCGAGTG]

[+] EMBL BX610208             [GCAACTGCCGTGACGGTCGGTCCGCACTACACATTCGCGTCCATCACAAAGCGATCACCTTCCATCCCCTTCCCTTTGCCAACATTCGACCAACATTCGAAAGCGCGTTCGTTGCTTGGTGCGCGTTGATGTCGTGGCGACTTCTTTGCGCGAACTGAGCCAGCTGTTCCGCAAGCACAACCTGCTGCTAACGTCCGCGTTCGGTGCGGGCAAGGACACGATCGATTCGGCGTACGACGTGAAGGCGCTCTCGAAGTACCTGGACTTTCTGCACATCATGTGCTACGACTACAAGGGCAGCTGGGACGGACGGATCGGGCCGAACGCACCACTAACCAGCCGCGACTTCCTGAACGTGGAGTACTCGATCGAGCATCTGCTCGAGCTGGGCGCACCGGCCAGCAAGCTCGTGCTGGGGCTCCCATTCTACGGCCGCACCTTCGTCAGCCCGATGGCGAAGGCCCGGTTGGGCGACACGTCCGACAAGGTCGGGTTTGCCGGGCCCTCCACCAAAGAGAACGGGTTCATGGGCTACAACGAGGTGTGCGAGGAGCTGAAGCGCAACCCGGACGACTGGGACGCTCGAGTG]


>consensus_4410#1 GCAACTGCCGTGACGGTCGGTCCGCACTACACATTCGCGTCCATCACAAAGCGATCACCT TCCATCCCCTTCCCTTTGCCAACATTCGACCAACATTCGAAAGCGCGTTCGTTGCTTGGT GCGCGTTGATGTCGTGGCGACTTCTTTGCGCGAACTGAGCCAGCTGTTCCGCAAGCACAA CCTGCTGCTAACGTCCGCGTTCGGTGCGGGCAAGGACACGATCGATTCGGCGTACGACGT GAAGGCGCTCTCGAAGTACCTGGACTTTCTGCACATCATGTGCTACGACTACAAGGGCAG CTGGGACGGACGGATCGGGCCGAACGCACCACTAACCAGCCGCGACTTCCTGAACGTGGA GTACTCGATCGAGCATCTGCTCGAGCTGGGCGCACCGGCCAGCAAGCTCGTGCTGGGGCT CCCATTCTACGGCCGCACCTTCGTCAGCCCGATGGCGAAGGCCCGGTTGGGCGACACGTC CGACAAGGTCGGGTTTGCCGGGCCCTCCACCAAAGAGAACGGGTTCATGGGCTACAACGA GGTGTGCGAGGAGCTGAAGCGCAACCCGGACGACTGGGACGCTCGAGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4410#0      GTTTACGCTTATCTTTACGCTGGAGCGCCGCGCACACGCCAAAGGAAGTGAGTGATAGTG 60
consensus_4410#1      ------------------------------------------------------------
                                                                                  

consensus_4410#0      ATCTATTTAGGGGCGGTAGGCGGTAGAGAAGAAACGCGCACACGGAAAAAAAATCATTGA 120
consensus_4410#1      ------------------------------------------------------------
                                                                                  

consensus_4410#0      AAACAAGAAACAAACCCCGTCGAACAAGTGTTGCGCGATATAATACCGCCAAAGTGCGAG 180
consensus_4410#1      ------------------------------------------------------------
                                                                                  

consensus_4410#0      AAGCAAGAACTGATAAGGAAACAAGGGGAAGAGCATGATCGCTTCCCAGAGACTTGGTGT 240
consensus_4410#1      --------------------GCAACTGCCGTGAC--GGTCGGTCCGCACTACACATTCGC 38
                                           ***  *      *  * *** * * **          * 

consensus_4410#0      GCTCGAGACAGAAGCCAGCAGACAACATAATTATGCTGCTGCCGACGGTGAATCGATTGC 300
consensus_4410#1      GTCCATCACA-AAGCGATCACCTTCCATCCCCTTCCCTTTGCCAACATTCGACCAACATT 97
                      *  *   *** **** * **     ***     * *   **** **  *  * * *    

consensus_4410#0      CGAGGATTGGCT-GTTGCCTAACGCTGGTCGCTCTGTCGGTGCTGCTGCTACACGCCCGT 359
consensus_4410#1      CGAAAGCGCGTTCGTTGCTTGGTGCGCGTTGAT--GTCGTGGCGACTTCTTTGCGCGAAC 155
                      ***      * * ***** *   **  ** * *  ****  **  ** **   ***    

consensus_4410#0      TCTGGGAGCGGCGCCGTCGTGACGGACCACGATCGGGTGGTGACGTGCTACATCTCCACC 419
consensus_4410#1      TGAGCCAGCTGTTCCGC-------AAGCACAACCTGCTGCTAACGT-CCGCGT-TCGGTG 206
                      *  *  *** *  ***         * *** * * * ** * **** *  * * **    

consensus_4410#0      TGGGCCGTTTACCGCACCGGCAGCGCGTCCTACCCGCTCGACGCCTTCGATCCCACCCT- 478
consensus_4410#1      CGGGCAAGG-ACACGATCGATTCGGCGTACGACGTGAA-GGCGCTCTCGAAGTACCTGGA 264
                       ****     **   * **     **** * **  *   * ***  ****     *    

consensus_4410#0      CTGTACGCATGCCATCTAC-GCGTTTGCCGGGCTGGATGAGGAGAA-GAATGCCATCAAA 536
consensus_4410#1      CTTTCTGCACATCATGTGCTACGACTACAAGGGCAGCTGGGACGGACGGATCGGGCCGAA 324
                      ** *  ***   *** * *  **  * *  **   * ** *  * * * **     * **

consensus_4410#0      T-CGCTGGATGCCTGGCAGGACCTGAAAGACAACTACGGCAAGGGTGGGTACGAAAAGCT 595
consensus_4410#1      CGCACCACTAACCAGCCGCGACTTCCTGAACGTGGAGTACTCGATCGAGCATCTGCTCGA 384
                        * *      ** * *  *** *     **    *   *  *   * * *         

consensus_4410#0      GACCGGCATGANGGCCGCACATCCCCATCTGAAGGTGCTGCTCGCCATCGGTGGCTGGAA 655
consensus_4410#1      GCTGGGCGCACCGGCCAGCAAGCTCGTGCTGGGGCTCCCATTCTACGGCCGCACCTTCGT 444
                      *   ***     ****    * * *   ***  * * *   **  *  * *   **    

consensus_4410#0      CGANGGATCGGAGAAGTACTCCAACCTGGCGGCGAACCCGGAACGGCGCCAAGCGTTCGT 715
consensus_4410#1      CAGCCCGATGGCGAAG--GCCCGGTTGGGCGACACGTCCGACAAGGTC----GGGTTTGC 498
                      *        ** ****    **     **** *    ***  * **      * *** * 

consensus_4410#0      GAAGAATGCGCTCGACTTTGTCAAACAGTACGGGTTCGATGGGCTTGACCTGGACTGGGA 775
consensus_4410#1      ------CGGGCC---CTCCACCAAAGAGAACGGGTTC-ATGGGCTACAAC-------GAG 541
                             * **    **    **** ** ******** *******  * *       *  

consensus_4410#0      GTATCCGACGCAGCGCGGCGGCAAACCGGCCGATCGGGAAAACTTTGTGGCGCTCGTGCG 835
consensus_4410#1      GTGTGCGAGGAGCTGAAGCG-CAACCCGGACGACTGGGACGCTCGAGTG----------- 589
                      ** * *** *    *  *** *** **** ***  ****       ***           

consensus_4410#0      CGAACTGAGCCAGCTGTTCCGCAAGCACAACCTGCTGCTAACGTCCGCGTTCGGTGCGGG 895
consensus_4410#1      ------------------------------------------------------------
                                                                                  

consensus_4410#0      CAANGACACGATCGATTCGGCGTACGACGTGAANGCGCTCTCGAAAGTACCTGGAATTTT 955
consensus_4410#1      ------------------------------------------------------------
                                                                                  

consensus_4410#0      CTGCACATCA 965
consensus_4410#1      ----------
                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)