cluster # 4426

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4426 cluster # 4426 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4426#0 length = 805 sequences # 2

consensus_4426#1 length = 700 sequences # 1

consensusID : consensus_4426#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 805
fasta sequence

                              [AGATTCGCTTTCCGGATGACGTTACGATGGGCTTTCTAATCGAACACATCCTGAAGGTGCCACTGACCGTGATCGATGCGTTCCATTCCCACCTGGAACCGATGGAGTTTATCCGGCCGGAAACGTTCCACGATCAGGTTTCGTTCAGCTACGCCCGCATGCGCAACGAGTGGAACGTCGTGAAGGTGGACGGTGGTTTCGACCTGAAGACGGACCCGAAACGGATATACTCGCTCCACTGCTATCTGTATCCGTTCTTCAGCATCTGTCCCAAGTCGATAAGACGGCGATGATGAAGAGGATGATGCCGA-CCCGGCGCAGGACACACGCCAAACACGCCATAGCACACAGTCTGCACCGTACTGACGGACGGAGCGCCACTGAATGAAACACAGCAGATAGAGCCAAATCAAAGGATTAAGATTACGACGAAACCGTGTTGCAGATGGGCGGCAGAGGTATCAACGCCCGATGTTCTCTGGATGCGTAATGTAATGTACGCACTAGAAGGAAGTGATTGTATAGAGAAGGCAGCAGCAATGTGCATACTATTATACTTTGAAAAAAAAAAACTGTGATCGAGAGAAGAAAGGGTAAGACAGAATTGAAGTTGAAAACAGGCAATAGTAAGAATCAGGTGGTAGGTGTAAGACAACGATTGACAATAGTAAACGGTTAATGTGCAAAAGAAGAGATCACGCAATACTAAAAGCAAGATGTTAATAGGACCATAAAATAACACAAGAACATAAAAGTGTGTAAAAAGTATAGGAAAAACCTCTCAACTATATTTATGTTGAACAGA]

[+] EMBL BX609160             [AGATTCGCTTTCCGGATGACGTTACGATGGGCTTTCTAATCGAACACATCCTGAAGGTGCCACTGACCGTGATCGATGCGTTCCATTCCCACCTGGAACCGATGGAGTTTATCCGGCCGGAAACGTTCCACGATCAGGTTTCGTTCAGCTACGCCCGCATGCGCAACGAGTGGAACGTCGTGAAGGTGGACGGTGGTTTCGACCTGAAGACGGACCCGAAACGGATATACTCGCTCCACTGCTATCTGTATCCGTTCTTCAGCATCTGTCCCAAGTCGATAAGACGGCGATGATGAAGAGGATGATGCCGA CCCGGCGCAGGACACACGCCAAACACGCCATAGCACACAGTCTGCACCGTACTGACGGACGGAGCGCCACTGAATGAAACACAGCAGATAGAGCCAAATCAAAGGATTAAGATTACGACGAAACCGTGTTGCAGATGGGCGGCAGAGGTATCAACGCCCGATGTTCTCTGGATGCGTAATGTAATGTACGCACTAGAAGGAAGTGATTGTATAGAGAAGGCAGCAGCAATGTGCATACTATTATACTTTGAAAAAAAAAAACTGTGATCGAGAGAAGAAAGGGTAAGACAGAATTGAAGTTGAAAACAGGCAATAGTAAGAATCAGGTGGTAGGTGTAAGACAACGATTGACAATAGTAAACGGTTAATGTGCAAAAGAAGAGATCACGCAATACTAAAAGCAAGATGTTAATAGGACCATAAAATAACACAAGAACATAAAAGTGTGTAAAAAGTATAGGAAAAACCTCTCAACTATATTTATGTTGAACAGA]
[+] EMBL BM653395             [                                                                                                                                                  ccgTACGCCCGCATGCGCAACGAGTGGAACGTCGTGAAGGTGGACGGTGGTTTCGACCTGAAGACGGACCCGAAACGGATATACTCGCTCCACTGCTATCTGTATCCGTTCTTCAGCATCTGTCCCAAGTCGATAAGACGGCGATGATGAAGAGGATGATGCCGACCCCGGCGCAGGACACACGCCAAACACGCCATAGCACACAGTCTGCACCGTACTGACGGACGGAGCGCCACTGAATGAAACACAGCAGATAGAGCCAAATCAAAGGATTAAGATTACGACGAAACCGTGTTGCAGATGGGCGGCAGAGGTATCAACGCCCGATGTTCTCTGGATGCGTAATGTAATGTACGCACTAGAAGGAAGTGATTGTATAGAGAAGGCAGCAGCAATGTGCATACTATTATACTTTGAAAAAAAAAAACTGTGATCGAGAGAAGAAAGGGTAAGACAGAATTGAAGTTGAAAACAGGCAATAGTAAGAAGCAGGTGGTAGGTGTAAGACAACGATTGACAATAGTAAACGGTTAATGTGCAAAAGAAGAGATCACGCAATACTAAA                                                                                               ]




>consensus_4426#0
AGATTCGCTTTCCGGATGACGTTACGATGGGCTTTCTAATCGAACACATCCTGAAGGTGC
CACTGACCGTGATCGATGCGTTCCATTCCCACCTGGAACCGATGGAGTTTATCCGGCCGG
AAACGTTCCACGATCAGGTTTCGTTCAGCTACGCCCGCATGCGCAACGAGTGGAACGTCG
TGAAGGTGGACGGTGGTTTCGACCTGAAGACGGACCCGAAACGGATATACTCGCTCCACT
GCTATCTGTATCCGTTCTTCAGCATCTGTCCCAAGTCGATAAGACGGCGATGATGAAGAG
GATGATGCCGACCCGGCGCAGGACACACGCCAAACACGCCATAGCACACAGTCTGCACCG
TACTGACGGACGGAGCGCCACTGAATGAAACACAGCAGATAGAGCCAAATCAAAGGATTA
AGATTACGACGAAACCGTGTTGCAGATGGGCGGCAGAGGTATCAACGCCCGATGTTCTCT
GGATGCGTAATGTAATGTACGCACTAGAAGGAAGTGATTGTATAGAGAAGGCAGCAGCAA
TGTGCATACTATTATACTTTGAAAAAAAAAAACTGTGATCGAGAGAAGAAAGGGTAAGAC
AGAATTGAAGTTGAAAACAGGCAATAGTAAGAATCAGGTGGTAGGTGTAAGACAACGATT
GACAATAGTAAACGGTTAATGTGCAAAAGAAGAGATCACGCAATACTAAAAGCAAGATGT
TAATAGGACCATAAAATAACACAAGAACATAAAAGTGTGTAAAAAGTATAGGAAAAACCT
CTCAACTATATTTATGTTGAACAGA

consensusID : consensus_4426#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 700
fasta sequence

                              [CCGTCGTTTCTCAACCGCTCCCTGTTCTTTTTCTCTCTTTAACAGACCAAAACATCGACGGAAGTGAACAAGAAGGTAACGTTCTGGTTCGCAACCGGTGGCGCTGGGTTTTGCGTAAGCCGTGCCCTTGCGCTGAAGATGATGCCGATCGCTGCTAGCGGGAAGTTTGTGGCGATCGGGGACAAGATTCGCTTTCCGGATGACGTTACGATGGGCTTTCTAATCGAACACATCCTGAAGGTGCCACTGACCGTGATCGATGCGTTCCATTCCCACCTGGAACCGATGGAGTTTATCCGGCCGGAAACGTTCCACGATCAGGTTTCGTTCAGCTACGCCCGCATGCGCAACGAGTGGAACGTTGTGAAGGTGGACGGTGGTTTCGACCTGAAGACGGACCCGAAACGGATATACTCGCTCCACTGCTATCTGTATCCGTTCTTCAGCATCTGTCCCAAGTCGATAAGACGGCGATGATGAAGAGGATGATGCCGACCCCGGCGCAGGACACACGCCAAACACGCCATAGCACACAGTCTGCACCGTACTGACGGACGGAGCGCCACTGAATGAAACACAGCAGATAGAGCCAAATCAAAGGATTAAGATTACGACGAAACCGTGTTGCAGATGGGCGGCCCGATGTTCTCTGGGATGCGTAATGTAATGCGCAATCGAAGGAAGTGATTGTATAGAGAAG]

[+] EMBL BM634066             [CCGTCGTTTCTCAACCGCTCCCTGTTCTTTTTCTCTCTTTAACAGACCAAAACATCGACGGAAGTGAACAAGAAGGTAACGTTCTGGTTCGCAACCGGTGGCGCTGGGTTTTGCGTAAGCCGTGCCCTTGCGCTGAAGATGATGCCGATCGCTGCTAGCGGGAAGTTTGTGGCGATCGGGGACAAGATTCGCTTTCCGGATGACGTTACGATGGGCTTTCTAATCGAACACATCCTGAAGGTGCCACTGACCGTGATCGATGCGTTCCATTCCCACCTGGAACCGATGGAGTTTATCCGGCCGGAAACGTTCCACGATCAGGTTTCGTTCAGCTACGCCCGCATGCGCAACGAGTGGAACGTTGTGAAGGTGGACGGTGGTTTCGACCTGAAGACGGACCCGAAACGGATATACTCGCTCCACTGCTATCTGTATCCGTTCTTCAGCATCTGTCCCAAGTCGATAAGACGGCGATGATGAAGAGGATGATGCCGACCCCGGCGCAGGACACACGCCAAACACGCCATAGCACACAGTCTGCACCGTACTGACGGACGGAGCGCCACTGAATGAAACACAGCAGATAGAGCCAAATCAAAGGATTAAGATTACGACGAAACCGTGTTGCAGATGGGCGGCCCGATGTTCTCTGGGATGCGTAATGTAATGCGCAATCGAAGGAAGTGATTGTATAGAGAAG]




>consensus_4426#1
CCGTCGTTTCTCAACCGCTCCCTGTTCTTTTTCTCTCTTTAACAGACCAAAACATCGACG
GAAGTGAACAAGAAGGTAACGTTCTGGTTCGCAACCGGTGGCGCTGGGTTTTGCGTAAGC
CGTGCCCTTGCGCTGAAGATGATGCCGATCGCTGCTAGCGGGAAGTTTGTGGCGATCGGG
GACAAGATTCGCTTTCCGGATGACGTTACGATGGGCTTTCTAATCGAACACATCCTGAAG
GTGCCACTGACCGTGATCGATGCGTTCCATTCCCACCTGGAACCGATGGAGTTTATCCGG
CCGGAAACGTTCCACGATCAGGTTTCGTTCAGCTACGCCCGCATGCGCAACGAGTGGAAC
GTTGTGAAGGTGGACGGTGGTTTCGACCTGAAGACGGACCCGAAACGGATATACTCGCTC
CACTGCTATCTGTATCCGTTCTTCAGCATCTGTCCCAAGTCGATAAGACGGCGATGATGA
AGAGGATGATGCCGACCCCGGCGCAGGACACACGCCAAACACGCCATAGCACACAGTCTG
CACCGTACTGACGGACGGAGCGCCACTGAATGAAACACAGCAGATAGAGCCAAATCAAAG
GATTAAGATTACGACGAAACCGTGTTGCAGATGGGCGGCCCGATGTTCTCTGGGATGCGT
AATGTAATGCGCAATCGAAGGAAGTGATTGTATAGAGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4426#0      ------------------------------------------------------------
consensus_4426#1      CCGTCGTTTCTCAACCGCTCCCTGTTCTTTTTCTCTCTTTAACAGACCAAAACATCGACG 60
                                                                                  

consensus_4426#0      ------------------------------------------------------------
consensus_4426#1      GAAGTGAACAAGAAGGTAACGTTCTGGTTCGCAACCGGTGGCGCTGGGTTTTGCGTAAGC 120
                                                                                  

consensus_4426#0      ------------------------------------------------------------
consensus_4426#1      CGTGCCCTTGCGCTGAAGATGATGCCGATCGCTGCTAGCGGGAAGTTTGTGGCGATCGGG 180
                                                                                  

consensus_4426#0      ----AGATTCGCTTTCCGGATGACGTTACGATGGGCTTTCTAATCGAACACATCCTGAAG 56
consensus_4426#1      GACAAGATTCGCTTTCCGGATGACGTTACGATGGGCTTTCTAATCGAACACATCCTGAAG 240
                          ********************************************************

consensus_4426#0      GTGCCACTGACCGTGATCGATGCGTTCCATTCCCACCTGGAACCGATGGAGTTTATCCGG 116
consensus_4426#1      GTGCCACTGACCGTGATCGATGCGTTCCATTCCCACCTGGAACCGATGGAGTTTATCCGG 300
                      ************************************************************

consensus_4426#0      CCGGAAACGTTCCACGATCAGGTTTCGTTCAGCTACGCCCGCATGCGCAACGAGTGGAAC 176
consensus_4426#1      CCGGAAACGTTCCACGATCAGGTTTCGTTCAGCTACGCCCGCATGCGCAACGAGTGGAAC 360
                      ************************************************************

consensus_4426#0      GTCGTGAAGGTGGACGGTGGTTTCGACCTGAAGACGGACCCGAAACGGATATACTCGCTC 236
consensus_4426#1      GTTGTGAAGGTGGACGGTGGTTTCGACCTGAAGACGGACCCGAAACGGATATACTCGCTC 420
                      ** *********************************************************

consensus_4426#0      CACTGCTATCTGTATCCGTTCTTCAGCATCTGTCCCAAGTCGATAAGACGGCGATGATGA 296
consensus_4426#1      CACTGCTATCTGTATCCGTTCTTCAGCATCTGTCCCAAGTCGATAAGACGGCGATGATGA 480
                      ************************************************************

consensus_4426#0      AGAGGATGATGCCGACCC-GGCGCAGGACACACGCCAAACACGCCATAGCACACAGTCTG 355
consensus_4426#1      AGAGGATGATGCCGACCCCGGCGCAGGACACACGCCAAACACGCCATAGCACACAGTCTG 540
                      ****************** *****************************************

consensus_4426#0      CACCGTACTGACGGACGGAGCGCCACTGAATGAAACACAGCAGATAGAGCCAAATCAAAG 415
consensus_4426#1      CACCGTACTGACGGACGGAGCGCCACTGAATGAAACACAGCAGATAGAGCCAAATCAAAG 600
                      ************************************************************

consensus_4426#0      GATTAAGATTACGACGAAACCGTGTTGCAGATGGGCGGCAGAGGTATCAACGCCCGATGT 475
consensus_4426#1      GATTAAGATTACGACGAAACCGTGTTGCAGATGGGCGGC--------------CCGATGT 646
                      ***************************************              *******

consensus_4426#0      TCTCTGG-ATGCGTAATGTAATGTACGCACTAGAAGGAAGTGATTGTATAGAGAAGGCAG 534
consensus_4426#1      TCTCTGGGATGCGTAATGTAATG--CGCAATCGAAGGAAGTGATTGTATAGAGAAG---- 700
                      ******* ***************  **** * ************************    

consensus_4426#0      CAGCAATGTGCATACTATTATACTTTGAAAAAAAAAAACTGTGATCGAGAGAAGAAAGGG 594
consensus_4426#1      ------------------------------------------------------------
                                                                                  

consensus_4426#0      TAAGACAGAATTGAAGTTGAAAACAGGCAATAGTAAGAATCAGGTGGTAGGTGTAAGACA 654
consensus_4426#1      ------------------------------------------------------------
                                                                                  

consensus_4426#0      ACGATTGACAATAGTAAACGGTTAATGTGCAAAAGAAGAGATCACGCAATACTAAAAGCA 714
consensus_4426#1      ------------------------------------------------------------
                                                                                  

consensus_4426#0      AGATGTTAATAGGACCATAAAATAACACAAGAACATAAAAGTGTGTAAAAAGTATAGGAA 774
consensus_4426#1      ------------------------------------------------------------
                                                                                  

consensus_4426#0      AAACCTCTCAACTATATTTATGTTGAACAGA 805
consensus_4426#1      -------------------------------