These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4440#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence [GCAGGTCCGTGTGTGCAGCAGGTGCGCTAGGTCGATGTCGCAATAAACGAGTTCGTGTTTGACCCGAATGATTGAAGCCAGAAAGCATACGCGACTCAGTCCCATTTGTGGAGAACCTGGTGCATGTGTCCAAAATGCGTTGGACATTTTTGCGAACGAGGCATTTTCCTGACGGAAACAAGGTCAGCAGGGTACGATAACTGGAACATGTTAAACAGCCAAGAAGGTGCTTGAGCGCTCTGTGCATCGATCTGCCGCACAGGGAGCTAGATAGCTGAAGCTAGTGAAGGAGCAACTATCGCAGATTCGGGACCAGACGAGGTTGAAGGAAGGCATGTCTGGGCCGAGTGACCTGGAATATGATGCCAGCACGACATGCTCAGCCGAGACCAGTCCACCTAAAAAGTCGATCAGGCAAGCATGTAATTGAACGAATGCACAATTATCTATAACTTTACACTTCGCAGCACACACATCAATACTTACGGAACATATTGGACGTAACGCCATGGATCTTTACTGATCGATGTCTTTGCTGCTTTCCCTCGATCTGCATACCGGTGCACGAGGGCGTGGAAGCATGTGTGCACTGATGCTTATGCGTCCTTTATTAAGCTGCAAAACCGGCACACCAAAAATTTTATGGATTGGTGCGGCATTTCTGGTTTTGTTCCAACACACCGATGGTGAGATCGCCTTTGCCTGTAATATAACACATACAAGCCGTAGGATAGGCATACACTGTAACACTAATGGCC] [+] EMBL BX612603 [GCAGGTCCGTGTGTGCAGCAGGTGCGCTAGGTCGATGTCGCAATAAACGAGTTCGTGTTTGACCCGAATGATTGAAGCCAGAAAGCATACGCGACTCAGTCCCATTTGTGGAGAACCTGGTGCATGTGTCCAAAATGCGTTGGACATTTTTGCGAACGAGGCATTTTCCTGACGGAAACAAGGTCAGCAGGGTACGATAACTGGAACATGTTAAACAGCCAAGAAGGTGCTTGAGCGCTCTGTGCATCGATCTGCCGCACAGGGAGCTAGATAGCTGAAGCTAGTGAAGGAGCAACTATCGCAGATTCGGGACCAGACGAGGTTGAAGGAAGGCATGTCTGGGCCGAGTGACCTGGAATATGATGCCAGCACGACATGCTCAGCCGAGACCAGTCCACCTAAAAAGTCGATCAGGCAAGCATGTAATTGAACGAATGCACAATTATCTATAACTTTACACTTCGCAGCACACACATCAATACTTACGGAACATATTGGACGTAACGCCATGGATCTTTACTGATCGATGTCTTTGCTGCTTTCCCTCGATCTGCATACCGGTGCACGAGGGCGTGGAAGCATGTGTGCACTGATGCTTATGCGTCCTTTATTAAGCTGCAAAACCGGCACACCAAAAATTTTATGGATTGGTGCGGCATTTCTGGTTTTGTTCCAACACACCGATGGTGAGATCGCCTTTGCCTGTAATATAACACATACAAGCCGTAGGATAGGCATACACTGTAACACTAATGGCC] consensusID : consensus_4440#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [GATTCGGGATCCACTGACCGANCTGGATGTAAGGAAGGCACTGCCTAGTGCCGAGTGACCTGGAATATGATGCCAGCACCGACATGTCTTCAGCCGAGACCAGTCCACGGAATATATTGGACGTAATGCCATGGATCTCTTACTGATCGATGTCTTTGCTGCTTTCCCTCGATCTACATACCGGTGCACCGACGGGCGTGGAAGCATGTGTGTACTGATGCCTATGCGTTCTTTATTAAGCTGCAAAACTGGCACACTACACATTTTATGGAGTGGTGCGGCATTTCTGGTTTTGTTCCGCCACACCAATGGAGACATCGCCTTTGCCCAGTCTGTTCAAAATGAACCACTACAGCTTCACGTACTCGTGGCACAGCATTATCAATAGACAATCTGTCGCCAGAAGTTTTCTCTGGCGATCACTAGCCCCTTTTCTCGTGCTTATTTTTGCAGACACCGCTTTACGCAGGACGAAATACACCTCGTGCGCGATTCTG] [-] EMBL BX469188 [GATTCGGGATCCACTGACCGANCTGGATGTAAGGAAGGCACTGCCTAGTGCCGAGTGACCTGGAATATGATGCCAGCACCGACATGTCTTCAGCCGAGACCAGTCCACGGAATATATTGGACGTAATGCCATGGATCTCTTACTGATCGATGTCTTTGCTGCTTTCCCTCGATCTACATACCGGTGCACCGACGGGCGTGGAAGCATGTGTGTACTGATGCCTATGCGTTCTTTATTAAGCTGCAAAACTGGCACACTACACATTTTATGGAGTGGTGCGGCATTTCTGGTTTTGTTCCGCCACACCAATGGAGACATCGCCTTTGCCCAGTCTGTTCAAAATGAACCACTACAGCTTCACGTACTCGTGGCACAGCATTATCAATAGACAATCTGTCGCCAGAAGTTTTCTCTGGCGATCACTAGCCCCTTTTCTCGTGCTTATTTTTGCAGACACCGCTTTACGCAGGACGAAATACACCTCGTGCGCGATTCTG] consensusID : consensus_4440#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 120 fasta sequence [TGAGCATGTCGGGCTGGCATCATATTCCAGGTCACTCGGCCCAGACATGCCTGCCGTCAACCTCGTCGGGGCCCGAATCTGCGAAAGGTGCTCCGTCACCAGCTTCAGCGAACTAGCTCC] [+] EMBL BX618520 [TGAGCATGTCGGGCTGGCATCATATTCCAGGTCACTCGGCCCAGACATGCCTGCCGTCAACCTCGTCGGGGCCCGAATCTGCGAAAGGTGCTCCGTCACCAGCTTCAGCGAACTAGCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4440#0 GCAGGTCCGTGTGTGCAGCAGGTGCGCTAGGTCGATGTCGCAATAAACGAGTTCGTGTTT 60 consensus_4440#1 ------------------------------------------------------------ consensus_4440#2 ------------------------------------------------------------ consensus_4440#0 GACCCGAATGATTGAAGCCAGAAAGCATACGCGACTCAGTCCCATTTGTGGAGAACCTGG 120 consensus_4440#1 ------------------------------------------------------------ consensus_4440#2 ------------------------------------------------------------ consensus_4440#0 TGCATGTGTCCAAAATGCGTTGGACATTTTTGCGAACGAGGCATTTTCCTGACGGAAACA 180 consensus_4440#1 ------------------------------------------------------------ consensus_4440#2 ------------------------------------------------------------ consensus_4440#0 AGGTCAGCAGGGTACGATAACTGGAACATGTTAAACAGCCAAGAAGGTGCTTGAGCGCTC 240 consensus_4440#1 ------------------------------------------------------------ consensus_4440#2 ------------------------------------------------------------ consensus_4440#0 TGTGCATCGATCTGCCGCACAGGGAGCTAGATAGCTGAAGCTAGTGAAGGAGCAACTATC 300 consensus_4440#1 ------------------------------------------------------------ consensus_4440#2 ------------------------------------------------------------ consensus_4440#0 GCAGATTCGGGACCAGACGAGGTTGAAGGAAGGCATGTCTGGGCCGAGTGACCTGGAATA 360 consensus_4440#1 ------------------------------------------------------------ consensus_4440#2 ------------------------------------------------------------ consensus_4440#0 TGATGCCAGCACGACATGCTCAGCCGAGACCAGTCCACCTAAAAAGTCGATCAGGCAAGC 420 consensus_4440#1 -------GATTCGGGATCCACTGACCGANCTGG---ATGTAAGGAAG-GCACTGCCTAGT 49 consensus_4440#2 ------------------------------------------------------------ consensus_4440#0 ATGTAATTGAACGAATGCACAATTATCTATAACTTTACACTTCGCAGCACACACATCAAT 480 consensus_4440#1 GC-CGAGTGACCTGGAATATGAT-GCCAGCACCGACATGTCTT-CAGCCGAGAC--CAGT 104 consensus_4440#2 ------------------------------------------------------------ consensus_4440#0 ACTTACGGAACATATTGGACGTAACGCCATGGATCT-TTACTGATCGATGTCTTTGCTGC 539 consensus_4440#1 CC--ACGGAATATATTGGACGTAATGCCATGGATCTCTTACTGATCGATGTCTTTGCTGC 162 consensus_4440#2 ------------------------------------------------------------ consensus_4440#0 TTTCCCTCGATCTGCATACCGGTGCACGA--GGGCGTGGAAGCATGTGTGCACTGATGCT 597 consensus_4440#1 TTTCCCTCGATCTACATACCGGTGCACCGACGGGCGTGGAAGCATGTGTGTACTGATGCC 222 consensus_4440#2 --------------------------------------TGAGCATGT-CGGGCTGGCATC 21 ******* * *** consensus_4440#0 TATGCGTCCTTTATTAAGCTGCAAAACCGGCACACCAAAAATTTTATGGATTGGTGCGGC 657 consensus_4440#1 TATGCGTTCTTTATTAAGCTGCAAAACTGGCACACTACACATTTTATGGAGTGGTGCGGC 282 consensus_4440#2 ATATTCCAGGTCACTCGGC--CCAGACATGCCTGCCGTCAACCTCGTCGG--GGCCCGAA 77 * * * ** * * ** ** * * * * * ** ** consensus_4440#0 ATTTCTGGTTTTGTTCCAACAC-ACCGATGGTGAGATCGCCTTTGCCTG-------TAAT 709 consensus_4440#1 ATTTCTGGTTTTGTTCCGCCAC-ACCAATGGAGACATCGCCTTTGCCCAGTCTGTTCAAA 341 consensus_4440#2 TCTGCGAAAGGTGCTCCGTCACCAGCTTCAGCGAACTAGCTCC----------------- 120 * * ** *** *** * * * ** * ** consensus_4440#0 ATAACACATACAAGCCGTAGGATAGGCATA-CACTGTAACACTAATGGCC---------- 758 consensus_4440#1 ATGAACCACTACAGCTTCACG-TACTCGTGGCACAGCATTATCAATAGACAATCTGTCGC 400 consensus_4440#2 ------------------------------------------------------------ consensus_4440#0 ------------------------------------------------------------ consensus_4440#1 CAGAAGTTTTCTCTGGCGATCACTAGCCCCTTTTCTCGTGCTTATTTTTGCAGACACCGC 460 consensus_4440#2 ------------------------------------------------------------ consensus_4440#0 ------------------------------------- consensus_4440#1 TTTACGCAGGACGAAATACACCTCGTGCGCGATTCTG 497 consensus_4440#2 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||