cluster # 4451

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4451 cluster # 4451 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4451#0 length = 501 sequences # 2

consensus_4451#1 length = 337 sequences # 1

consensusID : consensus_4451#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 501
fasta sequence

                              [CCGTGTTTATATTGTTTATTGTTTATTTTATACATGTAGTTTTGTGGGTGTGTGTGTGGGTGTTTGGTGTAGTATTTTCTTTTTGATCACTCACTTATCTGCCACGGACTGAAATCTCGAACAAAAAAAGCATCAATCATATTGTTTCTAGTCTTTTTGCTCCTCGTTGATTTCTACCCTTGCAATCTCTACCGTTCTCTCTTTCATTTTCTCTTTCTCTCTGTTTATGTGCATCCCTTTGATAGTGGAATAAGTTATGCTCATTGTTTATTTAAGTTCGTACACTCATTTTTAAACGAATTGTTATAAATGCGCTCACCCCGATTAGTATCGCTGAGCCGCGTGGCTTCCGCCTCCAAGTATTCCGGTTCCGGCCATGGAACGCTAAGCTAGTTAAAAAGTACGTACCGAGGCAACGAGGAGAGCGGACGGGGAAAAGAAAGGGCTGATGCTTCATCTTTCCCTTCCACCTCCACGCTCCGCGAGTTTCCTATGTTGCAC]

[+] EMBL BM596983             [CCGTGTTTATATTGTTTATTGTTTATTTTATACATGTAGTTTTGTGGGTGTGTGTGTGGGTGTTTGGTGTAGTATTTTCTTTTTGATCACTCACTTATCTGCCACGGACTGAAATCTCGAACAAAAAAAGCATCAATCATATTGTTTCTAGTCTTTTTGCTCCTCGTTGATTTCTACCCTTGCAATCTCTACCGTTCTCTCTTTCATTTTCTCTTTCTCTCTGTTTATGTGCATCCCTTTGATAGTGGAATAAGTTATGCTCATTGTTTATTTAAGTTCGTACACTCATTTTTAAACGAATTGTTATAAATGCGCTCACCCCGATTAGTATCGCTGAGCCGCGTGGCTTCCGCCTCCAAGTATTCCGGTTCCGGCCATGGAACGCTAAGCTAGTTAAAAAGTACGTACCGAGGCAACGAGGAGAGCGGACGGGGAAAAGAAAGGGCTGATGCTTCATCTTTCCCTTCCACCTCCACGCTCCGCGAGTTTCCTATGTTGCAC]
[+] EMBL BM592654             [                                                                                            ACTTATCTGCCACGGACTG AATCTCGAAC AAAAAAGCATCAATCATATTGTTTCTAGTCTTGTTGCTCCTCGTTGATTTCTACCCTTGCAATCTCTACCGgt                                                                                                                                                                                                                                                                                                                 ]




>consensus_4451#0
CCGTGTTTATATTGTTTATTGTTTATTTTATACATGTAGTTTTGTGGGTGTGTGTGTGGG
TGTTTGGTGTAGTATTTTCTTTTTGATCACTCACTTATCTGCCACGGACTGAAATCTCGA
ACAAAAAAAGCATCAATCATATTGTTTCTAGTCTTTTTGCTCCTCGTTGATTTCTACCCT
TGCAATCTCTACCGTTCTCTCTTTCATTTTCTCTTTCTCTCTGTTTATGTGCATCCCTTT
GATAGTGGAATAAGTTATGCTCATTGTTTATTTAAGTTCGTACACTCATTTTTAAACGAA
TTGTTATAAATGCGCTCACCCCGATTAGTATCGCTGAGCCGCGTGGCTTCCGCCTCCAAG
TATTCCGGTTCCGGCCATGGAACGCTAAGCTAGTTAAAAAGTACGTACCGAGGCAACGAG
GAGAGCGGACGGGGAAAAGAAAGGGCTGATGCTTCATCTTTCCCTTCCACCTCCACGCTC
CGCGAGTTTCCTATGTTGCAC

consensusID : consensus_4451#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence

                              [GATAATTATAATCGCGCTGCACCACGAAATAGCATCGCTGAGCAGCGTGGCTTCCGCCTCCAAGTATNACCGGTTCCGGCCATGGAACGCTAAGCATAGNTNNAAAAAGTACGTACCGAGGCAACNNAGGAGAGCGGACGGGAAAGAGAAGGGGNCTGATGCNTACATCNTANNCCCTNCCCACCTCCCAACGCCNTCCCGGNCGAAGTTNTTNNCTAATTGNTANGNCANNNNGAAACCGCCNCNCCCCGAAAGAATTCCGAAATTCATGGAATTTAACNNTAACCCTTAAAAAGCCCNGAANAATTACCCCGGAACCGAAAAATTAAAGGGGCCA]

[+] EMBL BX629235             [GATAATTATAATCGCGCTGCACCACGAAATAGCATCGCTGAGCAGCGTGGCTTCCGCCTCCAAGTATNACCGGTTCCGGCCATGGAACGCTAAGCATAGNTNNAAAAAGTACGTACCGAGGCAACNNAGGAGAGCGGACGGGAAAGAGAAGGGGNCTGATGCNTACATCNTANNCCCTNCCCACCTCCCAACGCCNTCCCGGNCGAAGTTNTTNNCTAATTGNTANGNCANNNNGAAACCGCCNCNCCCCGAAAGAATTCCGAAATTCATGGAATTTAACNNTAACCCTTAAAAAGCCCNGAANAATTACCCCGGAACCGAAAAATTAAAGGGGCCA]




>consensus_4451#1
GATAATTATAATCGCGCTGCACCACGAAATAGCATCGCTGAGCAGCGTGGCTTCCGCCTC
CAAGTATNACCGGTTCCGGCCATGGAACGCTAAGCATAGNTNNAAAAAGTACGTACCGAG
GCAACNNAGGAGAGCGGACGGGAAAGAGAAGGGGNCTGATGCNTACATCNTANNCCCTNC
CCACCTCCCAACGCCNTCCCGGNCGAAGTTNTTNNCTAATTGNTANGNCANNNNGAAACC
GCCNCNCCCCGAAAGAATTCCGAAATTCATGGAATTTAACNNTAACCCTTAAAAAGCCCN
GAANAATTACCCCGGAACCGAAAAATTAAAGGGGCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4451#0      CCGTGTTTATATTGTTTATTGTTTATTTTATACATGTAGTTTTGTGGGTGTGTGTGTGGG 60
consensus_4451#1      ------------------------------------------------------------
                                                                                  

consensus_4451#0      TGTTTGGTGTAGTATTTTCTTTTTGATCACTCACTTATCTGCCACGGACTGAAATCTCGA 120
consensus_4451#1      ---------------------------------GATAATTATAATCGCGCTGCACCACGA 27
                                                         **  *   *  *      * * ***

consensus_4451#0      ACAAAAAAAGCATCAATCATATTGTTTCTAGTCTTTTTGCTCCTCGTTGATTTCTACCCT 180
consensus_4451#1      A--ATAGCATCGCTGAGCAGCGTGGCTTCCGCCTCCAAGTA--TNACCGGTTCCGGCCAT 83
                      *  * *  * *    * **   **  *   * **    *    *    * ** *  ** *

consensus_4451#0      TGCAATCTCTACCGTTCTCTCTTTCATTTTCTCTTTCTCTCTGTTTATGTGCATCCCTTT 240
consensus_4451#1      GGAA--CGCTAAGCATAGNTNNAAAAAGTACGTACCGAGGCAACNNAGGAGAGCGGACGG 141
                       * *  * ***    *   *     *  * *         *     * * *         

consensus_4451#0      GATAGTGGAATAAGTT-ATGCTCATTGTTTATTTAAGTTCGTACACTCATTTTTAAACGA 299
consensus_4451#1      GAAAGAGAAGGGGNCTGATGCNTAC-----ATCNTANNCCCTN--CCCACCTCCCAACGC 194
                      ** ** * *      * ****  *      **   *   * *   * **  *   **** 

consensus_4451#0      ATTGTTATAAATGCGCTCACCCCGATTAGTATCGCTGAGCCGCGTGGCTTCCGCCTCCAA 359
consensus_4451#1      CNTCCCGGNCGAAGTTNTTNNCTAATTGNTANGNCANNNNGAAACCGCCNCNCCCCGAAA 254
                        *                  *  ***  **   *           **  *  **   **

consensus_4451#0      GTATTCCGG--TTCCGGCCATGGAACGCTAAGCTAGTTAAAAAGTACGTACCGAGGCAAC 417
consensus_4451#1      GAATTCCGAAATTCATGGAATTTAACNNTAACCC--TTAAAAAGCCCNGAAN-AATTACC 311
                      * ******   ***  *  **  ***  *** *   ********  *  *   *   * *

consensus_4451#0      GAGGAGAGCGGACGGGGAAAAGAAAGGGCTGATGCTTCATCTTTCCCTTCCACCTCCACG 477
consensus_4451#1      CCGGA------ACCGAAAAATTAAAGGGGCCA---------------------------- 337
                        ***      ** *  ***  ******   *                            

consensus_4451#0      CTCCGCGAGTTTCCTATGTTGCAC 501
consensus_4451#1      ------------------------