These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4452#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 730 fasta sequence [CCGCTGCGCTATCACTGTGCCTGTCCGGATCCGGATTGTGTTATTTATTTGTCCGTGCAGCAGCAAAAAGTTATCCAACCCATCACTTTACAATGGATTACGTCGATATACAGGCCGTGGAATCGAAGCTTACCGACGTGACGGTCACGCCGATACCGATGATAAAGAATGCCCACACTAACCACAGCACCGGCGGCGGCAGCAGCAGCAGCAGCAACTATGGAGCCAATCACACGGCCAACATCACCATTACCCCGCAGGTAAATCATCGCAACAGCCACAACAACAGCAACCACCACCATCACAGTAGTGTGTCCGGAGCGGTCAACGATGGTTCCTCGGGAGCGCTAGCATTAACCGTTGGATCGAACCATAGCAACAGCAACAACAACAACGCCAACAGCAGCAGCAGCAGCAA---------CAACAATAGCAGTGCTGCGAATCTGGTAGCCCCGGTGACCACGTTCAATCAGTTCCCCAACAATGCCGGACTGTCCAAGTATGCCCAGCTGTTGATGGTGATCGAGGAGATGGGACGGGATCTGCGCCCAACGTACTCGGGCAGTCGCAACTCGGCCGAACGTTTGAAGCGGCTGATCGTACACGCACGAATTCTCGTCCGGGAGTGTCTGGTCGAAACGGAACGATCCGCCAGACAGTAGTTGGTCCGAGCTGCCTTTGGGCAATGGGGGAGGGGGTCACCGCTATCTCTCCGTCATTCATTCACGTCTAT] [+] EMBL BM582574 [CCGCTGCGCTATCACTGTGCCTGTCCGGATCCGGATTGTGTTATTTATTTGTCCGTGCAGCAGCAAAAAGTTATCCAACCCATCACTTTACAATGGATTACGTCGATATACAGGCCGTGGAATCGAAGCTTACCGACGTGACGGTCACGCCGATACCGATGATAAAGAATGCCCACACTAACCACAGCACCGGCGGCGGCAGCAGCAGCAGCAGCAACTATGGAGCCAATCACACGGCCAACATCACCATTACCCCGCAGGTAAATCATCGCAACAGCCACAACAACAGCAACCACCACCATCACAGTAGTGTGTCCGGAGCGGTCAACGATGGTTCCTCGGGAGCGCTAGCATTAACCGTTGGATCGAACCATAGCAACAGCAACAACAACAACGCCAACAGCAGCAGCAGCAGCAA CAACAATAGCAGTGCTGCGAATCTGGTAGCCCCGGTGACCACGTTCAATCAGTTCCCCAACAATGCCGGACTGTCCAAGTATGCCCAGCTGTTGATGGTGATCGAGGAGATGGGACGGGATCTGCGCCCAACGTACTCGGGCAGTCGCAACTCGGCCGAACGTTTGAAGCGGCTGATCGTACACGCACGAATTCTCGTCCGGGAGTGTCTGGTCGAAACGGAACGATCCGCCAGACAGTAGTTGGTCCGAGCTGCCTT ] [+] EMBL BX605698 [ CTATCACTGTGCCTGTCCGGATCCGGATTGTGTTATTTATTTGTCCGTGCAGCAGCAAAAAGTTATCCAACCCATCACTTTACAATGGATTACGTCGATATACAGGCCGTGGAATCGAAGCTTACCGACGTGACGGTCACGCCGATACCGATGATAAAGAATGCCCACACTAACCACAGCACCGGCGGCGGCGGCAGCAGCAGCAGCAACTATGGAGCCAATCACACGGCCAACATCACCATTACCCCGCAGGTAAATCATCGCAACAGCCACAACAACAGCAACCACCACCATCACAGTAGTGTGTCCGGAGCGGTCAACGATGGTTCCTCGGGAGCGCTAGCATTAACCGTTGGATCGAACCATAGCAACAGCAACAACAACAACGCCAACAGCAGCAGCAGCAGCAACAACAATAGCAACAATAGCAGTGCTGCGAATCTGGTAGCCCCGGTCACCACGTTCAATCAGTTCCCCAACAATGCCGGACTGTCCAAGTATGCCCAGCTGTTGATGGTGATCGAGGAGATGGGACGGGATCTGCGCCCGACGTACTCGGGCAGTCGCAACTCGGCCGAACGTTTGAAGCGGCTGATCGTACACGCACGCATTCTCGTCCGGGAGTGCCTGGTCGAAACGGAACGATCCGCCAGACAGTAGTTGGTCCGAGCTGCCTTTGGGCAATGGGGGAGGGGGTCACCGCTATCTCTCCGTCATTCATTCACGTCTAT] consensusID : consensus_4452#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [AATTGCCCGAGGTNTGAGTACTGAGTGGAATCATTCCTCCAGCAGCAGCAGCAACTATGGAGCCAATCACACGGCAACATCACATTACCCCGCAGGTAAATCATCGCAACAGCANAACAACAGAACAACAACATCACAGTAGTGTGTCCTGGAGCGGTCAACGATGGTTCCTCGGGAGCGCTAGCATTAACCGTTGGATCTGAACCATAGCAACAGCAACAACAACAACTGCCAACAGCAGCAGCAGCAGCAACAACAATAGCAGTGCTGCGAATCTGGTAGCCCCGGTGACCACGTTCAATCAGTTCCCCAACAATGCCGGACTGTCCAAGTATGCCCAGCTGTTGATGGTGATCGACTGAGATGGGACTGGGATCTGCGCCCAACGTACTCGGGCAGTCGCAACTCGGCCCGAACGTTTGAAGCGGCTGATCGTACACGCACGAATTCTCGTCCGGGAGTGTCTGGTCGAAACTGGAACGATCCGCAGACAGAGATAGGTCCGAGCTGCTATANGGGCAATGGGGGAGGGGGTCANCGCTATCTCTCCGTCATNCATTCACGTCTATCTCATTCTTC] [+] EMBL AL931076 [AATTGCCCGAGGTNTGAGTACTGAGTGGAATCATTCCTCCAGCAGCAGCAGCAACTATGGAGCCAATCACACGGCAACATCACATTACCCCGCAGGTAAATCATCGCAACAGCANAACAACAGAACAACAACATCACAGTAGTGTGTCCTGGAGCGGTCAACGATGGTTCCTCGGGAGCGCTAGCATTAACCGTTGGATCTGAACCATAGCAACAGCAACAACAACAACTGCCAACAGCAGCAGCAGCAGCAACAACAATAGCAGTGCTGCGAATCTGGTAGCCCCGGTGACCACGTTCAATCAGTTCCCCAACAATGCCGGACTGTCCAAGTATGCCCAGCTGTTGATGGTGATCGACTGAGATGGGACTGGGATCTGCGCCCAACGTACTCGGGCAGTCGCAACTCGGCCCGAACGTTTGAAGCGGCTGATCGTACACGCACGAATTCTCGTCCGGGAGTGTCTGGTCGAAACTGGAACGATCCGCAGACAGAGATAGGTCCGAGCTGCTATANGGGCAATGGGGGAGGGGGTCANCGCTATCTCTCCGTCATNCATTCACGTCTATCTCATTCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4452#0 CCGCTGCGCTATCACTGTGCCTGTCCGGATCCGGATTGTGTTATTTATTTGTCCGTGCAG 60 consensus_4452#1 ------------------------------------------------------------ consensus_4452#0 CAGCAAAAAGTTATCCAACCCATCACTTTACAATGGATTACGTCGATATACAGGCCGTGG 120 consensus_4452#1 ------------------------------------------------------------ consensus_4452#0 AATCGAAGCTTACCGACGTGACGGTCACGCCGATACCGATGATAAAGAATGCCCACA--C 178 consensus_4452#1 ----------------------------------------------AATTGCCCGAGGTN 14 * ***** consensus_4452#0 TAACCACAGCACCGG-CGGCGGCAGCAGCAGCAGCAGCAACTATGGAGCCAATCACACGG 237 consensus_4452#1 TGAGTACTGAGTGGAATCATTCCTCCAGCAGCAGCAGCAACTATGGAGCCAATCACACGG 74 * * ** * * * *********************************** consensus_4452#0 CCAACATCACCATTACCCCGCAGGTAAATCATCGCAACAGCCACAACAACAGCAACCACC 297 consensus_4452#1 C-AACATCAC-ATTACCCCGCAGGTAAATCATCGCAACAGC-ANAACAACAGAA--CAAC 129 * ******** ****************************** * ******** * ** * consensus_4452#0 ACCATCACAGTAGTGTGTCC-GGAGCGGTCAACGATGGTTCCTCGGGAGCGCTAGCATTA 356 consensus_4452#1 AACATCACAGTAGTGTGTCCTGGAGCGGTCAACGATGGTTCCTCGGGAGCGCTAGCATTA 189 * ****************** *************************************** consensus_4452#0 ACCGTTGGATC-GAACCATAGCAACAGCAACAACAACAAC-GCCAACAGCAGCAGCAGCA 414 consensus_4452#1 ACCGTTGGATCTGAACCATAGCAACAGCAACAACAACAACTGCCAACAGCAGCAGCAGCA 249 *********** **************************** ******************* consensus_4452#0 GCAACAACAATAGCAGTGCTGCGAATCTGGTAGCCCCGGTGACCACGTTCAATCAGTTCC 474 consensus_4452#1 GCAACAACAATAGCAGTGCTGCGAATCTGGTAGCCCCGGTGACCACGTTCAATCAGTTCC 309 ************************************************************ consensus_4452#0 CCAACAATGCCGGACTGTCCAAGTATGCCCAGCTGTTGATGGTGATCGAG-GAGATGGGA 533 consensus_4452#1 CCAACAATGCCGGACTGTCCAAGTATGCCCAGCTGTTGATGGTGATCGACTGAGATGGGA 369 ************************************************* ********* consensus_4452#0 C-GGGATCTGCGCCCAACGTACTCGGGCAGTCGCAACTCGGCC-GAACGTTTGAAGCGGC 591 consensus_4452#1 CTGGGATCTGCGCCCAACGTACTCGGGCAGTCGCAACTCGGCCCGAACGTTTGAAGCGGC 429 * ***************************************** **************** consensus_4452#0 TGATCGTACACGCACGAATTCTCGTCCGGGAGTGTCTGGTCGAAAC-GGAACGATCCGCC 650 consensus_4452#1 TGATCGTACACGCACGAATTCTCGTCCGGGAGTGTCTGGTCGAAACTGGAACGATCCGC- 488 ********************************************** ************ consensus_4452#0 AGACAGTAGTTGGTCCGAGCTGCCTT-TGGGCAATGGGGGAGGGGGTCACCGCTATCTCT 709 consensus_4452#1 AGACAGAGATAGGTCCGAGCTGCTATANGGGCAATGGGGGAGGGGGTCANCGCTATCTCT 548 ****** * ************ * ********************* ********** consensus_4452#0 CCGTCATTCATTCACGTCTAT---------- 730 consensus_4452#1 CCGTCATNCATTCACGTCTATCTCATTCTTC 579 ******* ************* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||