These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4460#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1270 fasta sequence [GATCGAATGATAGAAATTCTCATAAATGTGCTATTAACAGATCCAAGCACTGCCACCATAGTATGTATAATCACGCCTATTTGTTCACCAAAAGGACTGCAGTTGCCAATACCATCAAACGATATTAGTGGAACCGAAAGAACAACAGGGCAATGGTGTTACGTTTTTGGCAGTGGTTTATTGTTTTAGAAATGTTGTAGCTCCATCCTGTTACTGCCAACCATACCCAAAGAAACTTTCCAACCGTGAGCGCCAGTCTAAATGTCTGCCTGATCGTTGGATTATTAGTGGCCAGCCTCACGACCAACAATTGGATACAAGGAAATGCAAAGCGGCGAAATTATAATGAATCAAACGGGCAGGTCAATTTTGGACTGTTTTCTGGGCATCGGCGGCTGAACGTTGGGTTTGGTTTGAGGGACCATAAAATCGATGTTCCGGCAATGATCCGCAACGAACCAGACGTTATGAGTTATTGGCTTTGGTTAGGCGCTGCACTTGGCACAGGTTTCGGCATTCTGGGTGGTGTGATTACCGCCATCGCATCTGTACTTAAGTCGGCATCGGCATCAAAGAAAACTGGCACTATGGTGGTGCTGCTAGTAAGCAACCTATTCACCGGTTTCTCCCAGACAATTGCATTTGTTTGCTGGCTGGTACAGTTCTACAACTACCTCACCCACAACGTTCTGCTTGCAGAANATCGTAACAATAGCTGGTACAGTACCNGGCTGGTAGTACTGGGATCCAGTTTCTACTTTATACCCGCGGGTATTGTGTTGGTAGTGGTTAATTTAATTTTACTGATTGTCGCGACGCGTCTGGAACAACGGGAAAGGAAAAAGTTCCTAAGTCCTCCAACTGATGATAAAACCCAAGGCGCGATCATGTTATACTAAAACTGCAATGCGGAATGTTTACATATTGTCGTACAATCTCTTTACTTACTCTACCAATACTCAAATTCACAAATTCATTAATTTTTGAATGTATTATCTAAAAATAAGGATGGTTTTTAAATCATGCCATAAGATGAACTAAAGACAAATGAACACAATCCACGTGAAGTTGTGGTAGTTTTAGCTACTTGCGGGTAGAGTAGATATCCACCAGTACCGTTTTAATTTTACCATTTCGGGCCAGACCTGATTTTAATCTGCGTAAGATACTATTAGGAATTCAATAATTCTTTTACCATGAAAACGAAAGCATATTTTTAACATGAAAATAGCTACTTCAAGCTTATGAAATAAAAACAAATATTTTGTAG] [+] EMBL BX626450 [GATCGAATGATAGAAATTCTCATAAATGTGCTATTAACAGATCCAAGCACTGCCACCATAGTATGTATAATCACGCCTATTTGTTCACCAAAAGGACTGCAGTTGCCAATACCATCAAACGATATTAGTGGAACCGAAAGAACAACAGGGCAATGGTGTTACGTTTTTGGCAGTGGTTTATTGTTTTAGAAATGTTGTAGCTCCATCCTGTTACTGCCAACCATACCCAAAGAAACTTTCCAACCGTGAGCGCCAGTCTAAATGTCTGCCTGATCGTTGGATTATTAGTGGCCAGCCTCACGACCAACAATTGGATACAAGGAAATGCAAAGCGGCGAAATTATAATGAATCAAACGGGCAGGTCAATTTTGGACTGTTTTCTGGGCATCGGCGGCTGAACGTTGGGTTTGGTTTGAGGGACCATAAAATCGATGTTCCGGCAATGATCCGCAACGAACCAGACGTTATGAGTTATTGGCTTTGGTTAGGCGCTGCACTTGGCACAGGTTTCGGCATTCTGGGTGGTGTGATTACCGCCATCGCATCTGTACTTAAGTCGGCATCGGCATCAAAGAAAACTGGCACTATGGTGGTGCTGCTAGTAAGCAACCTATTCACCGGTTTCTCCCAGACAATTGCATTTGTTTGCTGGCTGGTACAGTTCTACAACTACCTCACCCACAACGTTCTGCTTGCAGAANATCGTAACAATAGCTGGTACAGTACCNGGCTGGTAGTACTGGGATCCAGTTTCTACTTTATAC ] [+] EMBL BX613334 [ TGCTAGTAAGCAACCTATTCACCGGTTTCTCCCAGACAATTGCATTTGTTTGCTGGCTGGTACAGTTCTACAACTACCTCACCCACAACGTTCTGCTTGCAGAAGATCGTAACAATAGCTGGTACAGTACCGGGCTGGTAGTACTGGGATCCAGTTTCTACTTTATACCCGCGGGTATTGTGTTGGTAGTGGTTAATTTAATTTTACTGATTGTCGCGACGCGTCTGGAACAACGGGAAAGGAAAAAGTTCCTAAGTCCTCCAACTGATGATAAAACCCAAGGCGCGATCATGTTATACTAAAACTGCAATGCGGAATGTTTACATATTGTCGTACAATCTCTTTACTTACTCTACCAATACTCAAATTCACAAATTCATTAATTTTTGAATGTATTATCTAAAAATAAGGATGGTTTTTAAATCATGCCATAAGATGAACTAAAGACAAATGAACACAATCCACGTGAAGTTGTGGTAGTTTTAGCTACTTGCGGGTAGAGTAGATATCCACCAGTACCGTTTTAATTTTACCATTTCGGGCCAGACCTGATTTTAATCTGCGTAAGATACTATTAGGAATTCAATAATTCTTTTACCATGAAAACGAAAGCATATTTTTAACATGAAAATAGCTACTTCAAGCTTATGAAATAAAAACAAATATTTTGTAG] consensusID : consensus_4460#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [GTATGTATAATTCACGCCTATTCTGTTCACCAAAAGAGACTGCAGTTGCCAATACCATCAAACGATATTAGTGGAACCGAAAGAACAACAGGGCAATGGTGTTACGTTTTTGGCAGTGGATTTATTGTTTTAGAAATGTTGTAGCTCCATCCTGTTACTGCCAACCATACCCAAAGAAACTTTCCAACCGTGAGCGCCAGTCTAAATGTCGTATATGTTCTACGCTCATTTTGCTCCTTGTAAAGACAAGTGACGACGTATAAAGAAAAATAACGTTTGAAAAGTGCTTAACGAACATCAATCTTGAAACCATAGAGCCTCAAAACACGCAGCATTGTGTTTGTGACTTTTTTCACCAGCTGCCTGATCGTTGGATTATTAGTGGCCAGCCTCACGACTAACAATTGGATACAAGGAAATGCAAAGCGGCGAAATTATAATGAATCAAACGGGCAGGTCAATTTTGGACTGTTTTCTGGGCATCGGCGGCTGAACGTTGGGTTTGGTTTGAGGGACCATAAAATCTATGTTCCGGCAATGATCCGCAACGAACCAGACGTTATGTGTTATTGGCTTTGGTTAGGCGCTGCACTTGGTTTTTTTTTCGGCATTCTGGGTGGTGTGATTACCGCC] [+] EMBL CNS08RIM [GTATGTATAATTCACGCCTATTCTGTTCACCAAAAGAGACTGCAGTTGCCAATACCATCAAACGATATTAGTGGAACCGAAAGAACAACAGGGCAATGGTGTTACGTTTTTGGCAGTGGATTTATTGTTTTAGAAATGTTGTAGCTCCATCCTGTTACTGCCAACCATACCCAAAGAAACTTTCCAACCGTGAGCGCCAGTCTAAATGTCGTATATGTTCTACGCTCATTTTGCTCCTTGTAAAGACAAGTGACGACGTATAAAGAAAAATAACGTTTGAAAAGTGCTTAACGAACATCAATCTTGAAACCATAGAGCCTCAAAACACGCAGCATTGTGTTTGTGACTTTTTTCACCAGCTGCCTGATCGTTGGATTATTAGTGGCCAGCCTCACGACTAACAATTGGATACAAGGAAATGCAAAGCGGCGAAATTATAATGAATCAAACGGGCAGGTCAATTTTGGACTGTTTTCTGGGCATCGGCGGCTGAACGTTGGGTTTGGTTTGAGGGACCATAAAATCTATGTTCCGGCAATGATCCGCAACGAACCAGACGTTATGTGTTATTGGCTTTGGTTAGGCGCTGCACTTGGTTTTTTTTTCGGCATTCTGGGTGGTGTGATTACCGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4460#0 GATCGAATGATAGAAATTCTCATAAATGTGCTATTAACAGATCCAAGCACTGCCACCATA 60 consensus_4460#1 ------------------------------------------------------------ consensus_4460#0 GTATGTATAAT-CACGCCTATT-TGTTCACCAAAAG-GACTGCAGTTGCCAATACCATCA 117 consensus_4460#1 GTATGTATAATTCACGCCTATTCTGTTCACCAAAAGAGACTGCAGTTGCCAATACCATCA 60 *********** ********** ************* *********************** consensus_4460#0 AACGATATTAGTGGAACCGAAAGAACAACAGGGCAATGGTGTTACGTTTTTGGCAGTGG- 176 consensus_4460#1 AACGATATTAGTGGAACCGAAAGAACAACAGGGCAATGGTGTTACGTTTTTGGCAGTGGA 120 *********************************************************** consensus_4460#0 TTTATTGTTTTAGAAATGTTGTAGCTCCATCCTGTTACTGCCAACCATACCCAAAGAAAC 236 consensus_4460#1 TTTATTGTTTTAGAAATGTTGTAGCTCCATCCTGTTACTGCCAACCATACCCAAAGAAAC 180 ************************************************************ consensus_4460#0 TTTCCAACCGTGAGCGCCAGTCTAAATGTC------------------------------ 266 consensus_4460#1 TTTCCAACCGTGAGCGCCAGTCTAAATGTCGTATATGTTCTACGCTCATTTTGCTCCTTG 240 ****************************** consensus_4460#0 ------------------------------------------------------------ consensus_4460#1 TAAAGACAAGTGACGACGTATAAAGAAAAATAACGTTTGAAAAGTGCTTAACGAACATCA 300 consensus_4460#0 ------------------------------------------------------------ consensus_4460#1 ATCTTGAAACCATAGAGCCTCAAAACACGCAGCATTGTGTTTGTGACTTTTTTCACCAGC 360 consensus_4460#0 TGCCTGATCGTTGGATTATTAGTGGCCAGCCTCACGACCAACAATTGGATACAAGGAAAT 326 consensus_4460#1 TGCCTGATCGTTGGATTATTAGTGGCCAGCCTCACGACTAACAATTGGATACAAGGAAAT 420 ************************************** ********************* consensus_4460#0 GCAAAGCGGCGAAATTATAATGAATCAAACGGGCAGGTCAATTTTGGACTGTTTTCTGGG 386 consensus_4460#1 GCAAAGCGGCGAAATTATAATGAATCAAACGGGCAGGTCAATTTTGGACTGTTTTCTGGG 480 ************************************************************ consensus_4460#0 CATCGGCGGCTGAACGTTGGGTTTGGTTTGAGGGACCATAAAATCGATGTTCCGGCAATG 446 consensus_4460#1 CATCGGCGGCTGAACGTTGGGTTTGGTTTGAGGGACCATAAAATCTATGTTCCGGCAATG 540 ********************************************* ************** consensus_4460#0 ATCCGCAACGAACCAGACGTTATGAGTTATTGGCTTTGGTTAGGCGCTGCACTTGGCACA 506 consensus_4460#1 ATCCGCAACGAACCAGACGTTATGTGTTATTGGCTTTGGTTAGGCGCTGCACTTGGTTTT 600 ************************ ******************************* consensus_4460#0 GGTTTCGGCATTCTGGGTGGTGTGATTACCGCCATCGCATCTGTACTTAAGTCGGCATCG 566 consensus_4460#1 TTTTTCGGCATTCTGGGTGGTGTGATTACCGCC--------------------------- 633 ******************************* consensus_4460#0 GCATCAAAGAAAACTGGCACTATGGTGGTGCTGCTAGTAAGCAACCTATTCACCGGTTTC 626 consensus_4460#1 ------------------------------------------------------------ consensus_4460#0 TCCCAGACAATTGCATTTGTTTGCTGGCTGGTACAGTTCTACAACTACCTCACCCACAAC 686 consensus_4460#1 ------------------------------------------------------------ consensus_4460#0 GTTCTGCTTGCAGAANATCGTAACAATAGCTGGTACAGTACCNGGCTGGTAGTACTGGGA 746 consensus_4460#1 ------------------------------------------------------------ consensus_4460#0 TCCAGTTTCTACTTTATACCCGCGGGTATTGTGTTGGTAGTGGTTAATTTAATTTTACTG 806 consensus_4460#1 ------------------------------------------------------------ consensus_4460#0 ATTGTCGCGACGCGTCTGGAACAACGGGAAAGGAAAAAGTTCCTAAGTCCTCCAACTGAT 866 consensus_4460#1 ------------------------------------------------------------ consensus_4460#0 GATAAAACCCAAGGCGCGATCATGTTATACTAAAACTGCAATGCGGAATGTTTACATATT 926 consensus_4460#1 ------------------------------------------------------------ consensus_4460#0 GTCGTACAATCTCTTTACTTACTCTACCAATACTCAAATTCACAAATTCATTAATTTTTG 986 consensus_4460#1 ------------------------------------------------------------ consensus_4460#0 AATGTATTATCTAAAAATAAGGATGGTTTTTAAATCATGCCATAAGATGAACTAAAGACA 1046 consensus_4460#1 ------------------------------------------------------------ consensus_4460#0 AATGAACACAATCCACGTGAAGTTGTGGTAGTTTTAGCTACTTGCGGGTAGAGTAGATAT 1106 consensus_4460#1 ------------------------------------------------------------ consensus_4460#0 CCACCAGTACCGTTTTAATTTTACCATTTCGGGCCAGACCTGATTTTAATCTGCGTAAGA 1166 consensus_4460#1 ------------------------------------------------------------ consensus_4460#0 TACTATTAGGAATTCAATAATTCTTTTACCATGAAAACGAAAGCATATTTTTAACATGAA 1226 consensus_4460#1 ------------------------------------------------------------ consensus_4460#0 AATAGCTACTTCAAGCTTATGAAATAAAAACAAATATTTTGTAG 1270 consensus_4460#1 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||