These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 798 fasta sequence [AGAAGAGAAATAATGTTTAAAAAATAATAAAAGCATGGCAGAGATGGATTTTCAATTCAAATACGAGTGTTTGTGCACGAGCCCCAAAAGCATAAGAGTTGACGATGCTCTCCCAATGCATCCCGCTTACCAGCAATGTCAATGCGACCTTACCGGACATTACCATCCCCGACCGTGAAAAAGGATTGGCGATCATGAAAAGCGTAAGCAATAAATTGCCGCCTTCCGGATGTAGTTGCGCTTGTGAAGCAATATCCAACGTATTATCCCCCGTGCTGGACGCAGGTTTGGCGGAAGTGAACATCGAACCACTACGGGAGCAATCCCTGCTGGAAAAGGTACAACTATTAAAACCGTTTGTGCCAGCGTTCCACGATGATATTTCGTTGTGCAACTTCTTCATGCGTGCCTGGAAACAGGCCGTTCGGTTTTATTGTCCTAGATTGGTGGGCGAACTGGCGCAAGTCTACCCACAGTTTCTCGAGCCACTCGTAGACGCACTAATGAAAGTACAGGACGCCGATTACGGGTCGCTGCAGCTGCTGAAAGAATTCCAATTTTTAGCCCGCTGCCTTACGATAGGCGAATCCTTCTATGCCATACTGTCATATCTCGCCAAGCAAGACCGCGTTCGTGCCCAGCCCCTGATTAGCGCTTGCATTCGCTCTGCCAAGGACCAGCTGTCCAGCAAAGAGTACTACGCACTATTCCCGCCGGCAANTANACCCCTACGCCATCGTAATGAACGAGATTATCNATNCCAACGATACCGACGTGGAAATGCTAATCGGTCAGTTA] [+] EMBL BX621799 [AGAAGAGAAATAATGTTTAAAAAATAATAAAAGCATGGCAGAGATGGATTTTCAATTCAAATACGAGTGTTTGTGCACGAGCCCCAAAAGCATAAGAGTTGACGATGCTCTCCCAATGCATCCCGCTTACCAGCAATGTCAATGCGACCTTACCGGACATTACCATCCCCGACCGTGAAAAAGGATTGGCGATCATGAAAAGCGTAAGCAATAAATTGCCGCCTTCCGGATGTAGTTGCGCTTGTGAAGCAATATCCAACGTATTATCCCCCGTGCTGGACGCAGGTTTGGCGGAAGTGAACATCGAACCACTACGGGAGCAATCCCTGCTGGAAAAGGTACAACTATTAAAACCGTTTGTGCCAGCGTTCCACGATGATATTTCGTTGTGCAACTTCTTCATGCGTGCCTGGAAACAGGCCGTTCGGTTTTATTGTCCTAGATTGGTGGGCGAACTGGCGCAAGTCTACCCACAGTTTCTCGAGCCACTCGTAGACGCACTAATGAAAGTACAGGACGCCGATTACGGGTCGCTGCAGCTGCTGAAAGAATTCCAATTTTTAGCCCGCTGCCTTACGATAGGCGAATCCTTCTATGCCATACTGTCATATCTCGCCAAGCAAGACCGCGTTCGTGCCCAGCCCCTGATTAGCGCTTGCATTCGCTCTGCCAAGGACCAGCTGTCCAGCAAAGAGTACTACGCACTATTCCCGCCGGCAANTANACCCCTACGCCATCGTAATGAACGAGATTATCNATNCCAACGATACCGACGTGGAAATGCTAATCGGTCAGTTA] consensusID : consensus_4465#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 521 fasta sequence [AGATCGGCACGAGGTGGAGATGGATTTTCAATTCAAATACGAGTGTAAGTGCACGAGCCCCAAAAGCATAAGAGTTAACGATATTCACAACACCGACTATCAACGGCGAATAAAGGAACGCATGAATGAAATCGTCGATCGATCGTGGGACGAAACGGATCCCAGCATCCTTTCGCAGTTGACAATGCTCTCCCAGTGCATCCCGCTTACCAGCAATGTCAATGCGACCATACCGGACATTACCATCCCCGAGCCGTGAAAAAGGATTGGCGATCATGAAAAGCGTAAGCAATACATTGCCGCCTTCCGGATGTAGTTGCGCTTGTGAAGCAATATCCAACGTATTATCCACCGTGCTGGACGCAGGTTTGGCGGAAGTGAACATCGAACCACTACGGGAGCAATCCTTGCTGGAAAAAGTACAACTATGTAAAACCGTTTGTGCCAGCGTTCCACGACGATGTTTACCTTGTGCAACGTTCTTCATGCGTGCCTGGAAACAGGCCGTNTCGGTTTTATTG] [+] EMBL BX469247 [AGATCGGCACGAGGTGGAGATGGATTTTCAATTCAAATACGAGTGTAAGTGCACGAGCCCCAAAAGCATAAGAGTTAACGATATTCACAACACCGACTATCAACGGCGAATAAAGGAACGCATGAATGAAATCGTCGATCGATCGTGGGACGAAACGGATCCCAGCATCCTTTCGCAGTTGACAATGCTCTCCCAGTGCATCCCGCTTACCAGCAATGTCAATGCGACCATACCGGACATTACCATCCCCGAGCCGTGAAAAAGGATTGGCGATCATGAAAAGCGTAAGCAATACATTGCCGCCTTCCGGATGTAGTTGCGCTTGTGAAGCAATATCCAACGTATTATCCACCGTGCTGGACGCAGGTTTGGCGGAAGTGAACATCGAACCACTACGGGAGCAATCCTTGCTGGAAAAAGTACAACTATGTAAAACCGTTTGTGCCAGCGTTCCACGACGATGTTTACCTTGTGCAACGTTCTTCATGCGTGCCTGGAAACAGGCCGTNTCGGTTTTATTG] [+] EMBL BX603837 [ GGCGGAGATGGATTTTCAATTCAAATACGAGTGTAAGTGCACGAGCCCCAAAAGCATAAGAGTTAACGATATTCACAACACCGACTATCAACGGCGAATAAAGGAACGCATGAATGAAATCGTCGATCGATCGTGGGACGAAACGGATCCCAGCATCCTTTCGCAGTTGACAATGCTCTCCCAGTGCATCCCGCTTACCAGCAATGTCAATGCGACCATACCGGACATTACC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4465#0 ------------------------------------------------------------ consensus_4465#1 AGATCGGCACGAGGTGGAGATGGATTTTCAATTCAAATACGAGTGTAAGTGCACGAGCCC 60 consensus_4465#0 -------AGAAGAGA-AATAATGTTTAAAAAAT--AATAAAAGCATGGCAGAGATGGATT 50 consensus_4465#1 CAAAAGCATAAGAGTTAACGATATTCACAACACCGACTATCAACGGCGAATAAAGGAACG 120 * ***** ** ** ** * ** * * ** * * * * * * * * consensus_4465#0 TTCAATTCAAATA--CGAGTGTTTGTGC------ACGAGCCCCAAAAGCATA--AGAGTT 100 consensus_4465#1 CATGAATGAAATCGTCGATCGATCGTGGGACGAAACGGATCCCAGCATCCTTTCGCAGTT 180 * * **** *** * * *** *** **** * * * **** consensus_4465#0 GACGATGCTCTCCCAATGCATCCCGCTTACCAGCAATGTCAATGCGACCTTACCGGACAT 160 consensus_4465#1 GACAATGCTCTCCCAGTGCATCCCGCTTACCAGCAATGTCAATGCGACCATACCGGACAT 240 *** *********** ********************************* ********** consensus_4465#0 TACCATCCCCGA-CCGTGAAAAAGGATTGGCGATCATGAAAAGCGTAAGCAATAAATTGC 219 consensus_4465#1 TACCATCCCCGAGCCGTGAAAAAGGATTGGCGATCATGAAAAGCGTAAGCAATACATTGC 300 ************ ***************************************** ***** consensus_4465#0 CGCCTTCCGGATGTAGTTGCGCTTGTGAAGCAATATCCAACGTATTATCCCCCGTGCTGG 279 consensus_4465#1 CGCCTTCCGGATGTAGTTGCGCTTGTGAAGCAATATCCAACGTATTATCCACCGTGCTGG 360 ************************************************** ********* consensus_4465#0 ACGCAGGTTTGGCGGAAGTGAACATCGAACCACTACGGGAGCAATCCCTGCTGGAAAAGG 339 consensus_4465#1 ACGCAGGTTTGGCGGAAGTGAACATCGAACCACTACGGGAGCAATCCTTGCTGGAAAAAG 420 *********************************************** ********** * consensus_4465#0 TACAACTAT-TAAAACCGTTTGTGCCAGCGTTCCACGATGATATTT-CGTTGTGCAAC-T 396 consensus_4465#1 TACAACTATGTAAAACCGTTTGTGCCAGCGTTCCACGACGATGTTTACCTTGTGCAACGT 480 ********* **************************** *** *** * ********* * consensus_4465#0 TCTTCATGCGTGCCTGGAAACAGGCCGTT-CGGTTTTATTGTCCTAGATTGGTGGGCGAA 455 consensus_4465#1 TCTTCATGCGTGCCTGGAAACAGGCCGTNTCGGTTTTATTG------------------- 521 **************************** *********** consensus_4465#0 CTGGCGCAAGTCTACCCACAGTTTCTCGAGCCACTCGTAGACGCACTAATGAAAGTACAG 515 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 GACGCCGATTACGGGTCGCTGCAGCTGCTGAAAGAATTCCAATTTTTAGCCCGCTGCCTT 575 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 ACGATAGGCGAATCCTTCTATGCCATACTGTCATATCTCGCCAAGCAAGACCGCGTTCGT 635 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 GCCCAGCCCCTGATTAGCGCTTGCATTCGCTCTGCCAAGGACCAGCTGTCCAGCAAAGAG 695 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 TACTACGCACTATTCCCGCCGGCAANTANACCCCTACGCCATCGTAATGAACGAGATTAT 755 consensus_4465#1 ------------------------------------------------------------ consensus_4465#0 CNATNCCAACGATACCGACGTGGAAATGCTAATCGGTCAGTTA 798 consensus_4465#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||