These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4482#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 647 fasta sequence [CCGATTGTGACGTGGTTGAAAATTTAGGACTGAGGAAAAGTGTTTCGTTTGTCCGGCACAAAATTGCATTAGATTTCGTTGAAAAATCCATCCTCGCACGGTGCATCTGGTGGTATTGTGAAGCCGCTTAGATAACGCACACACCAGCCCGGTCCCGGTTATCAGGATGAGCTCGTTTAAGCGAGATAACAAGGAGGAAGATGACGGTGGCAATCCGTGGCAAAACCTGGAGAAGACGTCGGTGCTGCAGGAGACGCTAATGTTCAACGAGACGCCGGTGAACGCACGCAAATGTACACACATCCTCACCAAGATTCTGTACCTGCTCAATCACGGTGAGGTGCTGGGCACTCGGGAAGCGACTGAGTGTTTCTTCGCGATGACGAAGCTGTTCCAATCGAAGGACGTCGTGATGCGTCGCATGGTGTACCTCGGCATCAAGGAGCTGAGCCCGATCGCGGACGACGTGATCATTGTGACGAGCTCGCTGACGAAGGACATGACCGGGAAGGAGGATCTGTACCGTGCGCCGGCCATCCGCGCCCTGTGCAGCATCACGGACAGCACGATGCTGCAGGCGGTGGAGCGCTACATGAAGCAGTGCATCGTCGACCGGAACGCGCCCGTGTCGAGCGGTGCGCTCGTTA] [+] EMBL BM616326 [CCGATTGTGACGTGGTTGAAAATTTAGGACTGAGGAAAAGTGTTTCGTTTGTCCGGCACAAAATTGCATTAGATTTCGTTGAAAAATCCATCCTCGCACGGTGCATCTGGTGGTATTGTGAAGCCGCTTAGATAACGCACACACCAGCCCGGTCCCGGTTATCAGGATGAGCTCGTTTAAGCGAGATAACAAGGAGGAAGATGACGGTGGCAATCCGTGGCAAAACCTGGAGAAGACGTCGGTGCTGCAGGAGACGCTAATGTTCAACGAGACGCCGGTGAACGCACGCAAATGTACACACATCCTCACCAAGATTCTGTACCTGCTCAATCACGGTGAGGTGCTGGGCACTCGGGAAGCGACTGAGTGTTTCTTCGCG ] [+] EMBL BM579413 [ ccgGTTTCGTTTGTCCGGCACAAAATTGCATTAGATTTCGTTGAAAAACCCATCCCCGCACGGTGCAGCTGGTGGTATTGTGAAGCCGCAAAGATAACGCACACACCACCCCGGTCCCGGTTATCAGGATGAGCTCGTTTAAGCGAGATAACAAGGAGGAAGATGACGGTGGCAATCCGTGGCAAAACCTGGAGAAGACGTCGGTGCTGCAGGAGACGCGAATGTTCAACGAGACGCCGGTGAACGCACGCAAATGTACACACATTCTCACCAAGATTCTGTACCTGCTCAATCAGGGTGAGGTGCTGGGCACACGGGAAGCGACGGAGTGTTTCTTCGCGATGACGAAGCTGTTCCAATCGAAGGACGTCGTGATGCGTCGCATGGTGTACCTCGGCATCAAGGAGCTGAGCCCGATCGCGGACGACGTGATCATTGTGACGAGCTCGCTGACGAAGGACATGACCGGGAAGGAGGATCTGTACCGTGCGCCGGCCATCCGCGCCCTGTGCAGCATCACGGACAGCACGATGCTGCAGGCGGTGGAGCGCTACATGAAGCAGTGCATCGTCGACCGGAACGCGCCCGTGTCGAGCGGTGCGCTCGTTA] consensusID : consensus_4482#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [CCGCGGACGCGTGGGCGCCGGTGAACGCACGCAAATGTACACACATCCTCACCAAGATTCTGTACCTGCTCAATCAGGGTGAGGTGCTGGGCACCCGGGAAGCGACGGAGTGTTTCTTCGCGATGACGAAGCTGTTCCAATCGAAGGACGTCGTGATGCGTCGCATGGTGTACCTCGGCATCAAGGAGCTGAGCCCGATCGCGGACGACGTGATCATTGTGACGAGCTCGCTGACGAAGGACATGACCGGGAAGGAGGATCTGTACCGTGCGCCGGCCATCCGCGCCCTGTGCAGCATCACGGACAGCACGATGCTGCAGGCGGTGGAGCGCTACATGAAGCAGTGCATCGTCGACCGGAACGCGCCCGTGTCGAGCGGTGCGCTCGTTAGCTCGCTCCATCTGGCCAGCACGGCCGGGGAGGTGGTGAAGCGCTGGGCCAACGAGGCGCAGGAAGCGCTGAACAGCGACAACATTATGGTGCAGTACCATGGGCTCGGGCTGCTCTACCACATCCGCAAGGCGGACCGGCTCGCCGTCACCAAGCTGGTGAACAAGCTGACGCGCCAGCACTTGCGCAGCCCGTACGCCACCTGCT] [+] EMBL BM602966 [CCGCGGACGCGTGGGCGCCGGTGAACGCACGCAAATGTACACACATCCTCACCAAGATTCTGTACCTGCTCAATCAGGGTGAGGTGCTGGGCACCCGGGAAGCGACGGAGTGTTTCTTCGCGATGACGAAGCTGTTCCAATCGAAGGACGTCGTGATGCGTCGCATGGTGTACCTCGGCATCAAGGAGCTGAGCCCGATCGCGGACGACGTGATCATTGTGACGAGCTCGCTGACGAAGGACATGACCGGGAAGGAGGATCTGTACCGTGCGCCGGCCATCCGCGCCCTGTGCAGCATCACGGACAGCACGATGCTGCAGGCGGTGGAGCGCTACATGAAGCAGTGCATCGTCGACCGGAACGCGCCCGTGTCGAGCGGTGCGCTCGTTAGCTCGCTCCATCTGGCCAGCACGGCCGGGGAGGTGGTGAAGCGCTGGGCCAACGAGGCGCAGGAAGCGCTGAACAGCGACAACATTATGGTGCAGTACCATGGGCTCGGGCTGCTCTACCACATCCGCAAGGCGGACCGGCTCGCCGTCACCAAGCTGGTGAACAAGCTGACGCGCCAGCACTTGCGCAGCCCGTACGCCACCTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4482#0 CCGATTGTGACGTGGTTGAAAATTTAGGACTGAGGAAAAGTGTTTCGTTTGTCCGGCACA 60 consensus_4482#1 ------------------------------------------------------------ consensus_4482#0 AAATTGCATTAGATTTCGTTGAAAAATCCATCCTCGCACGGTGCATCTGGTGGTATTGTG 120 consensus_4482#1 ------------------------------------------------------------ consensus_4482#0 AAGCCGCTTAGATAACGCACACACCAGCCCGGTCCCGGTTATCAGGATGAGCTCGTTTAA 180 consensus_4482#1 ------------------------------------------------------------ consensus_4482#0 GCGAGATAACAAGGAGGAAGATGACGGTGGCAATCCGTGGCAAAACCTGGAGAAGACGTC 240 consensus_4482#1 ------------------------------------------------------------ consensus_4482#0 GGTGCTGCAGGAGACGCTAATGTTCAACGAGACGCCGGTGAACGCACGCAAATGTACACA 300 consensus_4482#1 -------------CCGCGGACGCGTG----GGCGCCGGTGAACGCACGCAAATGTACACA 43 *** * * * **************************** consensus_4482#0 CATCCTCACCAAGATTCTGTACCTGCTCAATCACGGTGAGGTGCTGGGCACTCGGGAAGC 360 consensus_4482#1 CATCCTCACCAAGATTCTGTACCTGCTCAATCAGGGTGAGGTGCTGGGCACCCGGGAAGC 103 ********************************* ***************** ******** consensus_4482#0 GACTGAGTGTTTCTTCGCGATGACGAAGCTGTTCCAATCGAAGGACGTCGTGATGCGTCG 420 consensus_4482#1 GACGGAGTGTTTCTTCGCGATGACGAAGCTGTTCCAATCGAAGGACGTCGTGATGCGTCG 163 *** ******************************************************** consensus_4482#0 CATGGTGTACCTCGGCATCAAGGAGCTGAGCCCGATCGCGGACGACGTGATCATTGTGAC 480 consensus_4482#1 CATGGTGTACCTCGGCATCAAGGAGCTGAGCCCGATCGCGGACGACGTGATCATTGTGAC 223 ************************************************************ consensus_4482#0 GAGCTCGCTGACGAAGGACATGACCGGGAAGGAGGATCTGTACCGTGCGCCGGCCATCCG 540 consensus_4482#1 GAGCTCGCTGACGAAGGACATGACCGGGAAGGAGGATCTGTACCGTGCGCCGGCCATCCG 283 ************************************************************ consensus_4482#0 CGCCCTGTGCAGCATCACGGACAGCACGATGCTGCAGGCGGTGGAGCGCTACATGAAGCA 600 consensus_4482#1 CGCCCTGTGCAGCATCACGGACAGCACGATGCTGCAGGCGGTGGAGCGCTACATGAAGCA 343 ************************************************************ consensus_4482#0 GTGCATCGTCGACCGGAACGCGCCCGTGTCGAGCGGTGCGCTCGTTA------------- 647 consensus_4482#1 GTGCATCGTCGACCGGAACGCGCCCGTGTCGAGCGGTGCGCTCGTTAGCTCGCTCCATCT 403 *********************************************** consensus_4482#0 ------------------------------------------------------------ consensus_4482#1 GGCCAGCACGGCCGGGGAGGTGGTGAAGCGCTGGGCCAACGAGGCGCAGGAAGCGCTGAA 463 consensus_4482#0 ------------------------------------------------------------ consensus_4482#1 CAGCGACAACATTATGGTGCAGTACCATGGGCTCGGGCTGCTCTACCACATCCGCAAGGC 523 consensus_4482#0 ------------------------------------------------------------ consensus_4482#1 GGACCGGCTCGCCGTCACCAAGCTGGTGAACAAGCTGACGCGCCAGCACTTGCGCAGCCC 583 consensus_4482#0 -------------- consensus_4482#1 GTACGCCACCTGCT 597 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||