These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4486#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1046 fasta sequence [AGATCGCCGAGGAACAACGAACGTTTGCCGTCCTCGCGTAGAAATGGCCAGTTTGTGCGTGTAATTGATAAAATTTGTAGACTCTGCTTATCGGAAAATGAAGCAATTCTACTGCCAACATCACAGGTCATCGATTCAACACTGACCGTCGATGATATTGAGCAATGTACCGGCGTACGGGTGGAAGAAGAACACGTGACGTACGTGATTTGCGAACCGTGCCACAATAAGCTGCAAAAATTTACCGCCTACCGATACTTCTGCTTAAGCAATGACGAGCGCTTCCGGGAACTGTTTTCAGCGCTGTGCGCAAGTGAGCGAGATTCGGAGGCTAAACCACCCAGCGCGACGTTCGAACACAGCTACTTTCGAATGGACGGTGACAGTGAGTACGTGATTACCTACGCCAAACCCTCGGATGATGGTTATGAAGAAGCAATCGAGGCCTTTGGGCTCGAGGAACTTCTACAGCCGGAAGAGCATGTTGAAATGGTCGAACCAACGGAGCAGCAGAACAGTGACGAGGGATTGGACTGGTGGTCCGCCACTACACCACCATTACCGTCCGAAGCCGAACTTTCCACAGAGGAGCTGGAAGAGTTTGAGCCTCCGGAGAAACCAAAGAAACCACGGAAACCGTACGTGCGACGAGCGACGCGAGCCGCACATAATATTGGCGACTGGTACGAATGCAAGCTTTGCGATCTGAAATTTCGCCATCCGGGAAGCTTGCGGGACCACAACAATCGCAAGCACAATGTGGCGAGCAACTGCGAATGCACAATCTGCGGCATGATGTTTGAGGACAGCTACGGATTGAAGAAACATGGCCGAGTGCACTCGAACGAGCAACCGTTTGCGTGTCGCTACTGTCCGAAGCGTTTCAAGAGCCCGAACGCGCACCGGGCACACGAGCTGATCCACCAGGGTGTCGTGTTCACGTGTGAATACTGTAAGAAAACCTATCGGTACAAATCGCTGCTCAATATGCATGTGAAAAAAGAGCACAAGAAGCAGGTGGCCGAAAGCGAAACAAAAAATGATTA] [+] EMBL AL930211 [AGATCGCCGAGGAACAACGAACGTTTGCCGTCCTCGCGTAGAAATGGCCAGTTTGTGCGTGTAATTGATAAAATTTGTAGACTCTGCTTATCGGAAAATGAAGCAATTCTACTGCCAACATCACAGGTCATCGATTCAACACTGACCGTCGATGATATTGAGCAATGTACCGGCGTACGGGTGGAAGAAGAACACGTGACGTACGTGATTTGCGAACCGTGCCACAATAAGCTGCAAAAATTTACCGCCTACCGATACTTCTGCTTAAGCAATGACGAGCGCTTCCGGGAACTGTTTTCAGCGCTGTGCGCAAGTGAGCGAGATTCGGAGGCTAAACCACCCAGCGCGACGTTCGAACACAGCTACTTTCGAATGGACGGTGACAGTGAGTACGTGATTACCTACGCCAAACCCTCGGATGATGGTTATGAAGAAGCAATCGAGGCCTTTGGGCTCGAGGAACTTCTACAGCCG ] [+] EMBL BX627492 [ GACAGTGAGTACGTGATTAGCTACGCCAAACCCTCGGATGATGGTTATGAAGAAGCAATCGAGGCCTTTGGGCTCGAGGAACTTCTACAGCCGGAAGAGCATGTTGAAATGGTCGAACCAACGGAGCAGCAGAACAGTGACGAGGGATTGGACTGGTGGTCCGCCACTACACCACCATTACCGTCCGAAGCCGAACTTTCCACAGAGGAGCTGGAAGAGTTTGAGCCTCCGGAGAAACCAAAGAAACCACGGAAACCGTACGTGCGACGAGCGACGCGAGCCGCACATAATATTGGCGACTGGTACGAATGCAAGCTTTGCGATCTGAAATTTCGCCATCCGGGAAGCTTGCGGGACCACAACAATCGCAAGCACAATGTGGCGAGCAACTGCGAATGCACAATCTGCGGCATGATGTTTGAGGACAGCTACGGATTGAAGAAACATGGCCGAGTGCACTCGAACGAGCAACCGTTTGCGTGTCGCTACTGTCCGAAGCGTTTCAAGAGCCCGAACGCGCACCGGGCACACGAGCTGATCCACCAGGGTGTCGTGTTCACGTGTGAATACTGTAAGAAAACCTATCGGTACAAATCGCTGCTCAATATGCATGTGAAAAAAGAGCACAAGAAGCAGGTGGCCGAAAGCGAAACAAAAAATGATTA] consensusID : consensus_4486#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 722 fasta sequence [AGATCGGCACAGGAATTNAAAGCGCTTCCGGGAACTGTTTTCAGCGCTGTGCGCAAGTGAGCGAGATTCGGAGGCTAAACCACCGAGTGCGATGTCCGAACACAGCTACTTCCGAATGGGCGATGACAGTGAGTACGTGATTAGCTACGCCAAACCATCGGATGATGGTTATGAAGAAGTAATCGAGGCGTTTGGGCTCGAAGAACATCTAGAGCCGGAAGAGCATGTTGAAATACTCGAACCAACGGAGCAGCAGAACAGTGACGAGGGATTGGACTGGTGGTCCGCCACTACACCACCATCACCGTCCGAAGCCGAACCTTTCACAGAGGAGCTGGAAGAGATTGAGCCTCCGGTGAAACCAAAGAAACCACGGAAACCGTACGTGCGACGGGCGACGATTGGTAAAGAGCAGGATAGTTCGGTGAAAAAACCACGGGTGTATAAGAAGCGACCAAATCGAAACAAGCTGCCCAAGAAGCTGTGCACGGTGTGTGGTAAGTTTTGTGGCCCACTTGAACCATCACCGTTCTATCGCGACACAAAGGAACGAAGGTTCCCTTGGCACATACTGTCCGAGGGCTTTCAGNTCGGCAGCTCGTTATTGGAACGGGTGCACGTAGAAACGGTACATCTTGAGAGNACAGACGGCCAAGAGCTGTGGAGCTGTGGCGATAGGAGCTTTTCGTACAAAGTCCAAGCGTACAACGATCCACATGCCG] [+] EMBL BX466376 [AGATCGGCACAGGAATTNAAAGCGCTTCCGGGAACTGTTTTCAGCGCTGTGCGCAAGTGAGCGAGATTCGGAGGCTAAACCACCGAGTGCGATGTCCGAACACAGCTACTTCCGAATGGGCGATGACAGTGAGTACGTGATTAGCTACGCCAAACCATCGGATGATGGTTATGAAGAAGTAATCGAGGCGTTTGGGCTCGAAGAACATCTAGAGCCGGAAGAGCATGTTGAAATACTCGAACCAACGGAGCAGCAGAACAGTGACGAGGGATTGGACTGGTGGTCCGCCACTACACCACCATCACCGTCCGAAGCCGAACCTTTCACAGAGGAGCTGGAAGAGATTGAGCCTCCGGTGAAACCAAAGAAACCACGGAAACCGTACGTGCGACGGGCGACGATTGGTAAAGAGCAGGATAGTTCGGTGAAAAAACCACGGGTGTATAAGAAGCGACCAAATCGAAACAAGCTGCCCAAGAAGCTGTGCACGGTGTGTGGTAAGTTTTGTGGCCCACTTGAACCATCACCGTTCTATCGCGACACAAAGGAACGAAGGTTCCCTTGGCACATACTGTCCGAGGGCTTTCAGNTCGGCAGCTCGTTATTGGAACGGGTGCACGTAGAAACGGTACATCTTGAGAGNACAGACGGCCAAGAGCTGTGGAGCTGTGGCGATAGGAGCTTTTCGTACAAAGTCCAAGCGTACAACGATCCACATGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4486#0 AGATCGCCGAGGAACAACGAACGTTTGCCGTCCTCGCGTAGAAATGGCCAGTTTGTGCGT 60 consensus_4486#1 ------------------------------------------------------------ consensus_4486#0 GTAATTGATAAAATTTGTAGACTCTGCTTATCGGAAAATGAAGCAATTCTACTGCCAACA 120 consensus_4486#1 ------------------------------------------------------------ consensus_4486#0 TCACAGGTCATCGATTCAACACTGACCGTCGATGATATTGAGCAATGTACCGGCGTACGG 180 consensus_4486#1 ------------------------------------------------------------ consensus_4486#0 GTGGAAGAAGAACACGTGACGTACGTGATTTGCGAACCGTGCCACAATAAGCTGCAAAAA 240 consensus_4486#1 ------------------------------------------------------------ consensus_4486#0 TTTACCGCCTACCGATACTTCTGCTTAAGCAATGACGAGCGCTTCCGGGAACTGTTTTCA 300 consensus_4486#1 ----------------AGATCGGCACAGG-AATTNAAAGCGCTTCCGGGAACTGTTTTCA 43 * ** ** * * *** *********************** consensus_4486#0 GCGCTGTGCGCAAGTGAGCGAGATTCGGAGGCTAAACCACCCAGCGCGACGTTCGAACAC 360 consensus_4486#1 GCGCTGTGCGCAAGTGAGCGAGATTCGGAGGCTAAACCACCGAGTGCGATGTCCGAACAC 103 ***************************************** ** **** ** ******* consensus_4486#0 AGCTACTTTCGAATGGACGGTGACAGTGAGTACGTGATTACCTACGCCAAACCCTCGGAT 420 consensus_4486#1 AGCTACTTCCGAATGGGCGATGACAGTGAGTACGTGATTAGCTACGCCAAACCATCGGAT 163 ******** ******* ** ******************** ************ ****** consensus_4486#0 GATGGTTATGAAGAAGCAATCGAGGCCTTTGGGCTCGAGGAACTTCTACAGCCGGAAGAG 480 consensus_4486#1 GATGGTTATGAAGAAGTAATCGAGGCGTTTGGGCTCGAAGAACATCTAGAGCCGGAAGAG 223 **************** ********* *********** **** **** *********** consensus_4486#0 CATGTTGAAATGGTCGAACCAACGGAGCAGCAGAACAGTGACGAGGGATTGGACTGGTGG 540 consensus_4486#1 CATGTTGAAATACTCGAACCAACGGAGCAGCAGAACAGTGACGAGGGATTGGACTGGTGG 283 *********** *********************************************** consensus_4486#0 TCCGCCACTACACCACCATTACCGTCCGAAGCCGAACTTTCCACAGAGGAGCTGGAAGAG 600 consensus_4486#1 TCCGCCACTACACCACCATCACCGTCCGAAGCCGAACCTTTCACAGAGGAGCTGGAAGAG 343 ******************* ***************** ** ******************* consensus_4486#0 TTTGAGCCTCCGGAGAAACCAAAGAAACCACGGAAACCGTACGTGCGACGAGCGACGCGA 660 consensus_4486#1 ATTGAGCCTCCGGTGAAACCAAAGAAACCACGGAAACCGTACGTGCGACGGGCGACG--- 400 ************ ************************************ ****** consensus_4486#0 GCCGCACATAATATTGGCGACTGGTACGAATGCAAGCTTTGCGATCTGAAATTTCGCCAT 720 consensus_4486#1 ------------ATTGGTAAAGAGCAGGA----TAGTTCGGTGA---AAAA-------AC 434 ***** * * * ** ** * * ** *** * consensus_4486#0 CCGGGAAGCTTGCGGGACCACAACAATCGCAAGCACAATGTGGCGAGCAACTGCGAATGC 780 consensus_4486#1 CACGGGTGTATAAGAAGCGACCA-AATCG-AAACAAGCTGCC-CAAGAAGCTG----TGC 487 * ** * * * * ** * ***** ** ** ** * ** * *** *** consensus_4486#0 ACAATCTGCGGCATGATGTTTGAGGACAGCTACGGATTGAAGAAACATGGC-CGAGTGC- 838 consensus_4486#1 ACGGTGTGTGGTAAGT--TTTGTGGCCCAC------TTGAACCATCACCGTTCTATCGCG 539 ** * ** ** * * **** ** * * ***** * ** * * * ** consensus_4486#0 ACTCGAACGAGCAACCGTTTGCGTGTCGC-TACTGTCCGAAGCGTTTCAAGAGCCCGAAC 897 consensus_4486#1 ACACAAAGGAACGAAGGTTCCCTTGGCACATACTGTCCGAGGGCTTTCA---GNTCGGCA 596 ** * ** ** * * *** * ** * * ********** * ***** * ** consensus_4486#0 GCGCACCGGGCACACGAGCTGATCCACCAGGGTGTCGTGT-TCACGTGTGAATACTGTAA 956 consensus_4486#1 GCTC----GTTATTGGAACGGGTGCACGTAGAAACGGTACATCTTGAGAGNACAGACGGC 652 ** * * * ** * * * *** * ** ** * * * * * consensus_4486#0 GAAAACCTATCGGTACAAATCGCTGCTCAATATGCATGTGAAAA--AAGAGCACAAGAAG 1014 consensus_4486#1 CAAGAGCTGTGGAGCTGTGGCGATAGGAGCTTTTCGTACAAAGTCCAAGCGTACAACGAT 712 ** * ** * * ** * * * * * ** *** * **** * consensus_4486#0 CAGGTGGCCGAAAGCGAAACAAAAAATGATTA 1046 consensus_4486#1 CCACATGCCG---------------------- 722 * **** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||