These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4493#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [CCGCCAAGTTCTGGCGAAACGGGCGGTCGATATCTTTCGGTCAAGGTGTTTCCAAGCTGGAAGGGAATGTGTGTAAGCAGATAAATACAACGCAAGGGAAAATGTGAAAAGTTGCTAGTTTGCTGAAACCCGTTTGTGAAGTGCTCGTGCCATTCCGCTGTACTGTGCCGTAGTGCGTCGTCGAGAATACAAGAACAACTCGAAGGAATGGAAGCGAAAAATGGCAAATCTGGTCCTACAACCACAATCCCTGTCGCATCGTCGGGTGGTGGGGGGTGCAGTGTTACCGCGACGGTCAAGAATGGGGTGAAGGAAAACCCGAACGGTCCCCGGGTGGTGACCATCTACAAGACGGAAACCGGTTTCGGGTTTAACGTCCGCGGACAAGTCAGCGAGGGTGGGCAGCTGCGATCAATCAACGGCGAGCTGTATGCACCACTGCAACACGTCAGTGCTGTTTTGGATAACGGGGCCGCGGAACAGGCTGGCATTAAAAAGGGCGATCGAATCCTGGAAGTCAATCATGTGGAACGTGGAAGGTGCTACTCACAAGCAAGGTGGTGGATCTCATCAAATCCGGTGGCGATACTCTAACGTTGACCGTCATATCAGTCACACAGCAAGAGGCGGAACGTCTTGAACCGACGGAAGACCCTGGCGGATATTCATACATCGACTATTCGGAAAAACGTAGCC] [+] EMBL BM606701 [CCGCCAAGTTCTGGCGAAACGGGCGGTCGATATCTTTCGGTCAAGGTGTTTCCAAGCTGGAAGGGAATGTGTGTAAGCAGATAAATACAACGCAAGGGAAAATGTGAAAAGTTGCTAGTTTGCTGAAACCCGTTTGTGAAGTGCTCGTGCCATTCCGCTGTACTGTGCCGTAGTGCGTCGTCGAGAATACAAGAACAACTCGAAGGAATGGAAGCGAAAAATGGCAAATCTGGTCCTACAACCACAATCCCTGTCGCATCGTCGGGTGGTGGGGGGTGCAGTGTTACCGCGACGGTCAAGAATGGGGTGAAGGAAAACCCGAACGGTCCCCGGGTGGTGACCATCTACAAGACGGAAACCGGTTTCGGGTTTAACGTCCGCGGACAAGTCAGCGAGGGTGGGCAGCTGCGATCAATCAACGGCGAGCTGTATGCACCACTGCAACACGTCAGTGCTGTTTTGGATAACGGGGCCGCGGAACAGGCTGGCATTAAAAAGGGCGATCGAATCCTGGAAGTCAATCATGTGGAACGTGGAAGGTGCTACTCACAAGCAAGGTGGTGGATCTCATCAAATCCGGTGGCGATACTCTAACGTTGACCGTCATATCAGTCACACAGCAAGAGGCGGAACGTCTTGAACCGACGGAAGACCCTGGCGGATATTCATACATCGACTATTCGGAAAAACGTAGCC] consensusID : consensus_4493#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [CCGCGGGCGGTCGATATCTTTCGGTCAAGTAATGTTCTTTATCGGAACGAGCGAGGCTTAAGTGTTAATAGTGACCATTTGTTCGACATTTGTTTCCATTTGACTGTCTGCGTTAAGGGTGTTTCCAAGCTGGAAGGGAATGTGTGTAAGCAGATAAATACAACGCAAGGGAAAATGTGAAAAGTTGCTAGTTTGCTGAAACCCGTTTGTGAAGTGCTCGTGCCATTCCGCTGTACTGTGCCGTAGTGCGTCGTCGAGAATACAAGAACAACTCGAAGGAATGGAAGCGAAAAATGGCAAATCTGGTCCTACAACCACAATCCCTGTCGCATCGTCGGGTGGTGGGGGGTGCAGTGTTACCGCGACGGTCAAGAATGGGGTGAAGGAAAACCCGAACGGTCCCCGGGTGGTGACCATCTACAAGACGGAAACCGGTTTCGGGTTTAACGTCCGCGGACAAGTCAGCGAGGGTGGGCAGCTGCGATCAATCAACGGCGAGCTGTATGCACCACTGCAACACGTCAGTGCTGTTTTGGATAACGGGGCCGCGGAACAGGCTGGCATTAAAAAGGGCGATCGAATCCTGGAAGTCAATCATGTGAAACGTGGAAGGTGCTACTCACAAGCAAGGTGGTGGATCTCATCAAATCCGGTGGCGATACTCTAACGTTGACCGTCATATC] [+] EMBL BM583644 [CCGCGGGCGGTCGATATCTTTCGGTCAAGTAATGTTCTTTATCGGAACGAGCGAGGCTTAAGTGTTAATAGTGACCATTTGTTCGACATTTGTTTCCATTTGACTGTCTGCGTTAAGGGTGTTTCCAAGCTGGAAGGGAATGTGTGTAAGCAGATAAATACAACGCAAGGGAAAATGTGAAAAGTTGCTAGTTTGCTGAAACCCGTTTGTGAAGTGCTCGTGCCATTCCGCTGTACTGTGCCGTAGTGCGTCGTCGAGAATACAAGAACAACTCGAAGGAATGGAAGCGAAAAATGGCAAATCTGGTCCTACAACCACAATCCCTGTCGCATCGTCGGGTGGTGGGGGGTGCAGTGTTACCGCGACGGTCAAGAATGGGGTGAAGGAAAACCCGAACGGTCCCCGGGTGGTGACCATCTACAAGACGGAAACCGGTTTCGGGTTTAACGTCCGCGGACAAGTCAGCGAGGGTGGGCAGCTGCGATCAATCAACGGCGAGCTGTATGCACCACTGCAACACGTCAGTGCTGTTTTGGATAACGGGGCCGCGGAACAGGCTGGCATTAAAAAGGGCGATCGAATCCTGGAAGTCAATCATGTGAAACGTGGAAGGTGCTACTCACAAGCAAGGTGGTGGATCTCATCAAATCCGGTGGCGATACTCTAACGTTGACCGTCATATC] consensusID : consensus_4493#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [CCGCCCACGCGTCCGCTTTCGGTCAAGTAATGTTATTTATCGGAACGAGCGAGGCTTAAGTGTTAATAGTGACCATTTGTTCGACATTTGTTCCCATTTGACTGTCTGCGTTAAGGGTGTTTCCAAGCTGGAAGGGAATTTGTGTAAGCAGATAAATACAACGCAAGGGAAAATGTGAAAAGTTGCTAGTTTGCTGAAACCCGTTTGTGAAGTGCTCGTGCCATTCCGCTGTACTGTGCCGTAGTGCGTCGTCGAGAATACAAGAACAACTCGAAGGAATGGAAGCGAAAAATGGCAAATCTGGTCCTACAACCACAATCCCTGTCGCATCGTCGGGTGGTGGGGGGTGCAGTGTTACCGCCACGGTCAAGAATGGGGTGAAGGAAAACCCGAACGGTCCCCGGGTGGTGACCATCTAAAAGACGGAAACCGGTTTCGGGTTTA] [+] EMBL BM611550 [CCGCCCACGCGTCCGCTTTCGGTCAAGTAATGTTATTTATCGGAACGAGCGAGGCTTAAGTGTTAATAGTGACCATTTGTTCGACATTTGTTCCCATTTGACTGTCTGCGTTAAGGGTGTTTCCAAGCTGGAAGGGAATTTGTGTAAGCAGATAAATACAACGCAAGGGAAAATGTGAAAAGTTGCTAGTTTGCTGAAACCCGTTTGTGAAGTGCTCGTGCCATTCCGCTGTACTGTGCCGTAGTGCGTCGTCGAGAATACAAGAACAACTCGAAGGAATGGAAGCGAAAAATGGCAAATCTGGTCCTACAACCACAATCCCTGTCGCATCGTCGGGTGGTGGGGGGTGCAGTGTTACCGCCACGGTCAAGAATGGGGTGAAGGAAAACCCGAACGGTCCCCGGGTGGTGACCATCTAAAAGACGGAAACCGGTTTCGGGTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4493#1 CCGCGGGCGGTCGATATCTTTCGGTCAAGTAATGTTCTTTATCGGAACGAGCGAGGCTTA 60 consensus_4493#2 CCGCCCACG--CGTCCGCTTTCGGTCAAGTAATGTTATTTATCGGAACGAGCGAGGCTTA 58 consensus_4493#0 ------------------------------------------------------------ consensus_4493#1 AGTGTTAATAGTGACCATTTGTTCGACATTTGTTTCCATTTGACTGTCTGCGTTAAGGGT 120 consensus_4493#2 AGTGTTAATAGTGACCATTTGTTCGACATTTGTTCCCATTTGACTGTCTGCGTTAAGGGT 118 consensus_4493#0 -----------CCGCCAAGTTCTGGCGAAACGG--GCGGTCGATATCTTTCGGTCAAGGT 47 *** * * * * * * * ** * ** * * *** consensus_4493#1 GTTTCCAAGCTGGAAGGGAATGTGTGTAAGCAGATAAATACAACGCAAGGGAAAATGTGA 180 consensus_4493#2 GTTTCCAAGCTGGAAGGGAATTTGTGTAAGCAGATAAATACAACGCAAGGGAAAATGTGA 178 consensus_4493#0 GTTTCCAAGCTGGAAGGGAATGTGTGTAAGCAGATAAATACAACGCAAGGGAAAATGTGA 107 ********************* ************************************** consensus_4493#1 AAAGTTGCTAGTTTGCTGAAACCCGTTTGTGAAGTGCTCGTGCCATTCCGCTGTACTGTG 240 consensus_4493#2 AAAGTTGCTAGTTTGCTGAAACCCGTTTGTGAAGTGCTCGTGCCATTCCGCTGTACTGTG 238 consensus_4493#0 AAAGTTGCTAGTTTGCTGAAACCCGTTTGTGAAGTGCTCGTGCCATTCCGCTGTACTGTG 167 ************************************************************ consensus_4493#1 CCGTAGTGCGTCGTCGAGAATACAAGAACAACTCGAAGGAATGGAAGCGAAAAATGGCAA 300 consensus_4493#2 CCGTAGTGCGTCGTCGAGAATACAAGAACAACTCGAAGGAATGGAAGCGAAAAATGGCAA 298 consensus_4493#0 CCGTAGTGCGTCGTCGAGAATACAAGAACAACTCGAAGGAATGGAAGCGAAAAATGGCAA 227 ************************************************************ consensus_4493#1 ATCTGGTCCTACAACCACAATCCCTGTCGCATCGTCGGGTGGTGGGGGGTGCAGTGTTAC 360 consensus_4493#2 ATCTGGTCCTACAACCACAATCCCTGTCGCATCGTCGGGTGGTGGGGGGTGCAGTGTTAC 358 consensus_4493#0 ATCTGGTCCTACAACCACAATCCCTGTCGCATCGTCGGGTGGTGGGGGGTGCAGTGTTAC 287 ************************************************************ consensus_4493#1 CGCGACGGTCAAGAATGGGGTGAAGGAAAACCCGAACGGTCCCCGGGTGGTGACCATCTA 420 consensus_4493#2 CGCCACGGTCAAGAATGGGGTGAAGGAAAACCCGAACGGTCCCCGGGTGGTGACCATCTA 418 consensus_4493#0 CGCGACGGTCAAGAATGGGGTGAAGGAAAACCCGAACGGTCCCCGGGTGGTGACCATCTA 347 *** ******************************************************** consensus_4493#1 CAAGACGGAAACCGGTTTCGGGTTTAACGTCCGCGGACAAGTCAGCGAGGGTGGGCAGCT 480 consensus_4493#2 AAAGACGGAAACCGGTTTCGGGTTTA---------------------------------- 444 consensus_4493#0 CAAGACGGAAACCGGTTTCGGGTTTAACGTCCGCGGACAAGTCAGCGAGGGTGGGCAGCT 407 ************************* consensus_4493#1 GCGATCAATCAACGGCGAGCTGTATGCACCACTGCAACACGTCAGTGCTGTTTTGGATAA 540 consensus_4493#2 ------------------------------------------------------------ consensus_4493#0 GCGATCAATCAACGGCGAGCTGTATGCACCACTGCAACACGTCAGTGCTGTTTTGGATAA 467 consensus_4493#1 CGGGGCCGCGGAACAGGCTGGCATTAAAAAGGGCGATCGAATCCTGGAAGTCAATCATGT 600 consensus_4493#2 ------------------------------------------------------------ consensus_4493#0 CGGGGCCGCGGAACAGGCTGGCATTAAAAAGGGCGATCGAATCCTGGAAGTCAATCATGT 527 consensus_4493#1 GAAACGTGGAAGGTGCTACTCACAAGCAAGGTGGTGGATCTCATCAAATCCGGTGGCGAT 660 consensus_4493#2 ------------------------------------------------------------ consensus_4493#0 GGAACGTGGAAGGTGCTACTCACAAGCAAGGTGGTGGATCTCATCAAATCCGGTGGCGAT 587 consensus_4493#1 ACTCTAACGTTGACCGTCATATC------------------------------------- 683 consensus_4493#2 ------------------------------------------------------------ consensus_4493#0 ACTCTAACGTTGACCGTCATATCAGTCACACAGCAAGAGGCGGAACGTCTTGAACCGACG 647 consensus_4493#1 ------------------------------------------------- consensus_4493#2 ------------------------------------------------- consensus_4493#0 GAAGACCCTGGCGGATATTCATACATCGACTATTCGGAAAAACGTAGCC 696 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||