cluster # 4503

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Anopheles gambiae
cluster # 4503 cluster # 4503 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4503#0 length = 703 sequences # 1

consensus_4503#1 length = 601 sequences # 2

consensusID : consensus_4503#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 703
fasta sequence

                              [CCGCGGACGCGTGGGTGCGGCGCCGCTGCTGGCTTTCCAGTGGGCCTTTCGGATCGTGTCACATTCGATTTGGACGCGGGTAAGAATGCATTTCTAGCCGATTGCATTGCCGCTTGCTTGCTTCTAGATGCTGTATTGGCGTTTAGATGCAAGGCAGCGCGTAGCCGAAACCCTTCGGTCACGGTGTAGGTGTAAGTCCCACAAGTGCAATTAACCTCAATCGCGAAAAACACAACAACACCAACAACAAACGCTGTCCCAAACTGCGGTCAATCGAATCGGGCCGAGCGATAGGCGCGAACTTTCCGAAAGGCACACCAGCAGCAGTACGGTTTCTTCAGCGATGGTTGTTGACCTCGATCACCAGGAAGCGGAACCATCGTCGGTGACAGCTGGACACGGACGATCTGGTGTCGCAAAGTACGAATTAGAATGGAAGAACATCTTGACGATCGCGCACCAGACCGACATGCCGGAATTGAGGCAGCTCGCCGTCCGGGGTGAACTACGCGCCTCGCCATTCCGGAGCGTTTGCTGGGCCATATTTCTCGGCGTGCTTGAGCCGCCCGGCACGGACCAGGCCTGGCCCCGGCAACGGTCCGATGCACGGGCCCACTACAGCCAGCTGAAGGAACAGTTTGTGCTGAATCCGCACCAGCAGACCACCGACGTGCGGGACGATCCACTGTCGCAATCGAAGCAA]

[+] EMBL BM602739             [CCGCGGACGCGTGGGTGCGGCGCCGCTGCTGGCTTTCCAGTGGGCCTTTCGGATCGTGTCACATTCGATTTGGACGCGGGTAAGAATGCATTTCTAGCCGATTGCATTGCCGCTTGCTTGCTTCTAGATGCTGTATTGGCGTTTAGATGCAAGGCAGCGCGTAGCCGAAACCCTTCGGTCACGGTGTAGGTGTAAGTCCCACAAGTGCAATTAACCTCAATCGCGAAAAACACAACAACACCAACAACAAACGCTGTCCCAAACTGCGGTCAATCGAATCGGGCCGAGCGATAGGCGCGAACTTTCCGAAAGGCACACCAGCAGCAGTACGGTTTCTTCAGCGATGGTTGTTGACCTCGATCACCAGGAAGCGGAACCATCGTCGGTGACAGCTGGACACGGACGATCTGGTGTCGCAAAGTACGAATTAGAATGGAAGAACATCTTGACGATCGCGCACCAGACCGACATGCCGGAATTGAGGCAGCTCGCCGTCCGGGGTGAACTACGCGCCTCGCCATTCCGGAGCGTTTGCTGGGCCATATTTCTCGGCGTGCTTGAGCCGCCCGGCACGGACCAGGCCTGGCCCCGGCAACGGTCCGATGCACGGGCCCACTACAGCCAGCTGAAGGAACAGTTTGTGCTGAATCCGCACCAGCAGACCACCGACGTGCGGGACGATCCACTGTCGCAATCGAAGCAA]




>consensus_4503#0
CCGCGGACGCGTGGGTGCGGCGCCGCTGCTGGCTTTCCAGTGGGCCTTTCGGATCGTGTC
ACATTCGATTTGGACGCGGGTAAGAATGCATTTCTAGCCGATTGCATTGCCGCTTGCTTG
CTTCTAGATGCTGTATTGGCGTTTAGATGCAAGGCAGCGCGTAGCCGAAACCCTTCGGTC
ACGGTGTAGGTGTAAGTCCCACAAGTGCAATTAACCTCAATCGCGAAAAACACAACAACA
CCAACAACAAACGCTGTCCCAAACTGCGGTCAATCGAATCGGGCCGAGCGATAGGCGCGA
ACTTTCCGAAAGGCACACCAGCAGCAGTACGGTTTCTTCAGCGATGGTTGTTGACCTCGA
TCACCAGGAAGCGGAACCATCGTCGGTGACAGCTGGACACGGACGATCTGGTGTCGCAAA
GTACGAATTAGAATGGAAGAACATCTTGACGATCGCGCACCAGACCGACATGCCGGAATT
GAGGCAGCTCGCCGTCCGGGGTGAACTACGCGCCTCGCCATTCCGGAGCGTTTGCTGGGC
CATATTTCTCGGCGTGCTTGAGCCGCCCGGCACGGACCAGGCCTGGCCCCGGCAACGGTC
CGATGCACGGGCCCACTACAGCCAGCTGAAGGAACAGTTTGTGCTGAATCCGCACCAGCA
GACCACCGACGTGCGGGACGATCCACTGTCGCAATCGAAGCAA

consensusID : consensus_4503#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 601
fasta sequence

                              [CCGCGTCCCTCTCTGAGCGCTTTGTTATTTGTTGCCCAAAGATAAGCGGACTGGCGGTGTTTACGGTGCCGATAATTTTAACCATTCCCTTTTTCCCGTTAGATCGTGTCACATTCGATTTGGACGCGGGTAAGAATGCATTTCTAGCCGATTGCATTGCCGCTTGCTTGCTTCTAGATGCTGTATTGGCGTTTAGATGCAAGGCAGCGCGTAGCCGAAACCCTTCGGTCACGGTGTAGGTGTAAGTCCCACAAGTGCAATTAACCTCAATCGCGAAAAACACAACAACACCAACAACAAACGCTGTCCCAAACTGCGGTCAATCGAATCGGGCCGAGCGATAGGCGCGAACTTTCCGAAAGGCACACCAGCAGCAGTACGGTTTCTTCAGCGATGGTTGTTGACCTCGATCACCAGGAAGCGGAACCATCGTCGGTGACAGCTGGACACGGACGATCTGGTGTCGCAAAGTACGAATTAGAATGGAAGAACATCTTGACGATCGCGCACCAGACCGACATGCCGGAATTGAGGCAGCTCGCCCGTCCGGGGTGAACTACGCGCCTCGCCATTTCCGGAGCGTTTGCTGGGCCATAATTTC]

[+] EMBL BM576233             [CCGCGTCCCTCTCTGAGCGCTTTGTTATTTGTTGCCCAAAGATAAGCGGACTGGCGGTGTTTACGGTGCCGATAATTTTAACCATTCCCTTTTTCCCGTTAGATCGTGTCACATTCGATTTGGACGCGGGTAAGAATGCATTTCTAGCCGATTGCATTGCCGCTTGCTTGCTTCTAGATGCTGTATTGGCGTTTAGATGCAAGGCAGCGCGTAGCCGAAACCCTTCGGTCACGGTGTAGGTGTAAGTCCCACAAGTGCAATTAACCTCAATCGCGAAAAACACAACAACACCAACAACAAACGCTGTCCCAAACTGCGGTCAATCGAATCGGGCCGAGCGATAGGCGCGAACTTTCCGAAAGGCACACCAGCAGCAGTACGGTTTCTTCAGCGATGGTTGTTGACCTCGATCACCAGGAAGCGGAACCATCGTCGGTGACAGCTGGACACGGACGATCTGGTGTCGCAAAGTACGAATTAGAATGGAAGAACATCTTGACGATCGCGCACCAGACCGACATGCCGGAATTGAGGCAGCTCGCCCGTCCGGGGTGAACTACGCGCCTCGCCATTTCCGGAGCGTTTGCTGGGCCATAATTTC]
[+] EMBL BM625898             [                                               ccgCTGGCGGTGTTTACGGTGCCGATAATTTTAACCATTCCCTTTTTCCCGTTAGAACGTGTCACATTCGATTTGGACGCGGGTAAGAATGCATTTCTAGCCGATTGCATTGCCGCTCGCTTGCTTCTAGATGCTGTATTGGCGTTTAGATGCAAGGCAGCGCGTAGCCGAAACCCTTCGGTCACGGTGTAGGTGTAAGTCCCACAAGTGCAATTAACCTCAATCGCGAAAAACACAA      CAACAAC GACGCTGTCCCAAACTGCGGTCAATCGAATCGAGCCGAGCGATAGGTTTGAACTTTCCGAAAGG  CACCAGCAGCAGTACGGTTTCTTCAGCGATGGTTGTTGACCTCGATCACCAGGAAGCGGAACCATCGTCGGTGACAGCTGGACACGGACGATCTGGTGTCGCAAAGTACGAATTAGAATGGAAGAACATCTTGACGATCGCGCACCAGACCGACATGCCGGAATTGAGGCAGCTCG CCGTCCG                                                    ]




>consensus_4503#1
CCGCGTCCCTCTCTGAGCGCTTTGTTATTTGTTGCCCAAAGATAAGCGGACTGGCGGTGT
TTACGGTGCCGATAATTTTAACCATTCCCTTTTTCCCGTTAGATCGTGTCACATTCGATT
TGGACGCGGGTAAGAATGCATTTCTAGCCGATTGCATTGCCGCTTGCTTGCTTCTAGATG
CTGTATTGGCGTTTAGATGCAAGGCAGCGCGTAGCCGAAACCCTTCGGTCACGGTGTAGG
TGTAAGTCCCACAAGTGCAATTAACCTCAATCGCGAAAAACACAACAACACCAACAACAA
ACGCTGTCCCAAACTGCGGTCAATCGAATCGGGCCGAGCGATAGGCGCGAACTTTCCGAA
AGGCACACCAGCAGCAGTACGGTTTCTTCAGCGATGGTTGTTGACCTCGATCACCAGGAA
GCGGAACCATCGTCGGTGACAGCTGGACACGGACGATCTGGTGTCGCAAAGTACGAATTA
GAATGGAAGAACATCTTGACGATCGCGCACCAGACCGACATGCCGGAATTGAGGCAGCTC
GCCCGTCCGGGGTGAACTACGCGCCTCGCCATTTCCGGAGCGTTTGCTGGGCCATAATTT
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4503#0      -------------------------------------------CCGCGGACGCGTGGG-- 15
consensus_4503#1      CCGCGTCCCTCTCTGAGCGCTTTGTTATTTGTTGCCCAAAGATAAGCGGACTGGCGGTGT 60
                                                                   ******  * **   

consensus_4503#0      -TGCGGCGCCGCTGCT----GGCTTTCCAGTGGGCCTTTCGGATCGTGTCACATTCGATT 70
consensus_4503#1      TTACGGTGCCGATAATTTTAACCATTCCCTTTTTCCCGTTAGATCGTGTCACATTCGATT 120
                       * *** **** *  *      * ****  *   **  *  *******************

consensus_4503#0      TGGACGCGGGTAAGAATGCATTTCTAGCCGATTGCATTGCCGCTTGCTTGCTTCTAGATG 130
consensus_4503#1      TGGACGCGGGTAAGAATGCATTTCTAGCCGATTGCATTGCCGCTTGCTTGCTTCTAGATG 180
                      ************************************************************

consensus_4503#0      CTGTATTGGCGTTTAGATGCAAGGCAGCGCGTAGCCGAAACCCTTCGGTCACGGTGTAGG 190
consensus_4503#1      CTGTATTGGCGTTTAGATGCAAGGCAGCGCGTAGCCGAAACCCTTCGGTCACGGTGTAGG 240
                      ************************************************************

consensus_4503#0      TGTAAGTCCCACAAGTGCAATTAACCTCAATCGCGAAAAACACAACAACACCAACAACAA 250
consensus_4503#1      TGTAAGTCCCACAAGTGCAATTAACCTCAATCGCGAAAAACACAACAACACCAACAACAA 300
                      ************************************************************

consensus_4503#0      ACGCTGTCCCAAACTGCGGTCAATCGAATCGGGCCGAGCGATAGGCGCGAACTTTCCGAA 310
consensus_4503#1      ACGCTGTCCCAAACTGCGGTCAATCGAATCGGGCCGAGCGATAGGCGCGAACTTTCCGAA 360
                      ************************************************************

consensus_4503#0      AGGCACACCAGCAGCAGTACGGTTTCTTCAGCGATGGTTGTTGACCTCGATCACCAGGAA 370
consensus_4503#1      AGGCACACCAGCAGCAGTACGGTTTCTTCAGCGATGGTTGTTGACCTCGATCACCAGGAA 420
                      ************************************************************

consensus_4503#0      GCGGAACCATCGTCGGTGACAGCTGGACACGGACGATCTGGTGTCGCAAAGTACGAATTA 430
consensus_4503#1      GCGGAACCATCGTCGGTGACAGCTGGACACGGACGATCTGGTGTCGCAAAGTACGAATTA 480
                      ************************************************************

consensus_4503#0      GAATGGAAGAACATCTTGACGATCGCGCACCAGACCGACATGCCGGAATTGAGGCAGCTC 490
consensus_4503#1      GAATGGAAGAACATCTTGACGATCGCGCACCAGACCGACATGCCGGAATTGAGGCAGCTC 540
                      ************************************************************

consensus_4503#0      GCC-GTCCGGGGTGAACTACGCGCCTCGCCATT-CCGGAGCGTTTGCTGGGCCATATTTC 548
consensus_4503#1      GCCCGTCCGGGGTGAACTACGCGCCTCGCCATTTCCGGAGCGTTTGCTGGGCCATAATTT 600
                      *** ***************************** ********************** ** 

consensus_4503#0      TCGGCGTGCTTGAGCCGCCCGGCACGGACCAGGCCTGGCCCCGGCAACGGTCCGATGCAC 608
consensus_4503#1      C----------------------------------------------------------- 601
                                                                                  

consensus_4503#0      GGGCCCACTACAGCCAGCTGAAGGAACAGTTTGTGCTGAATCCGCACCAGCAGACCACCG 668
consensus_4503#1      ------------------------------------------------------------
                                                                                  

consensus_4503#0      ACGTGCGGGACGATCCACTGTCGCAATCGAAGCAA 703
consensus_4503#1      -----------------------------------