These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [CCGCCCACGCGTCCGCACATACACACAAGACGAAGAAAAGAACTAAAAAGCAAACCACATTAACAAGGACAAACGAAAGTAAACGAGAAGAAGTAGGGATGAAATAATCGAATAAAAGACAAACAAAAACTACCCAAAACTACCAGAACAACACAAGTAAAGTGAAGAGGGAAAAACAAAACCGCAAACACATGTACGTGCTTCATTGTTATCTATACTAATGCAAATGGGTGGTTGTGGAAGTGTTTCTGTGTCTGAGAGAGAACGCGCGTGGAGTTGATCGGTTTGGAATGCTAACAGTGTGCTGTCCAGCAGAAGAAGAGAAAAAACAATCGCGAAAGGGAACGAAATAAGAAGAGAAGCAAAAGAAAACAAACAGGAAAAGAAGTTGATGTGAAAGATGCTCCATAGGAAATTGAAAAAAAAGGACTAGATTAAATGGAAGAACAAAACAGAAGAATGGGGGGAAAGGAAAGGACACAGAGTAAGGAAAGGTGGAAAAAGCAAAGCAGTAAGGTTTACAAGTGGTGTGTTGGACAAAAAAGGTATAGATAATAATGAACAGAGAATATA] [+] EMBL BM639312 [CCGCCCACGCGTCCGCACATACACACAAGACGAAGAAAAGAACTAAAAAGCAAACCACATTAACAAGGACAAACGAAAGTAAACGAGAAGAAGTAGGGATGAAATAATCGAATAAAAGACAAACAAAAACTACCCAAAACTACCAGAACAACACAAGTAAAGTGAAGAGGGAAAAACAAAACCGCAAACACATGTACGTGCTTCATTGTTATCTATACTAATGCAAATGGGTGGTTGTGGAAGTGTTTCTGTGTCTGAGAGAGAACGCGCGTGGAGTTGATCGGTTTGGAATGCTAACAGTGTGCTGTCCAGCAGAAGAAGAGAAAAAACAATCGCGAAAGGGAACGAAATAAGAAGAGAAGCAAAAGAAAACAAACAGGAAAAGAAGTTGATGTGAAAGATGCTCCATAGGAAATTGAAAAAAAAGGACTAGATTAAATGGAAGAACAAAACAGAAGAATGGGGGGAAAGGAAAGGACACAGAGTAAGGAAAGGTGGAAAAAGCAAAGCAGTAAGGTTTACAAGTGGTGTGTTGGACAAAAAAGGTATAGATAATAATGAACAGAGAATATA] consensusID : consensus_4506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence [CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGAAATAATCGAATAAATGACAAACAAAAACTACCCAAAACTACCAGAACAACACAAGTAAAGTGAAGAGGGAAAAACAAAACCGCAAACACATGTACGTGCTTCATTGTTATCTATACTAATGCAAATGGGTGGTTGTGGATGTGTTTCTGTGTCTGAGAGAGAACGCGCGTGGAGTTGATCGGTTTTGAATGCTAACAGTGTGCTGTCCAGCAGAAGAAGAGAAAAAACAATCGCGAAAGGGAACGAAATAAGAAGAGAAGCAAAAGAAAACAAACAGGAAAAGAAGTTGATGAGAAAGATGCTCCATAGGAAATTGAAAAAAAGGACTAGATTAAATGGAAGAACAAAATAGAAGAATGGGGGGAAAGGAAAGGACACAGAGTAAGGAAAGGTGAAAAAAAGCAAAGCAGTAAGGTTTACAAGAGGTGTGTTGGACAAAAAAGGTATAGATAATAA] [+] EMBL BM575012 [CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGAAATAATCGAATAAATGACAAACAAAAACTACCCAAAACTACCAGAACAACACAAGTAAAGTGAAGAGGGAAAAACAAAACCGCAAACACATGTACGTGCTTCATTGTTATCTATACTAATGCAAATGGGTGGTTGTGGATGTGTTTCTGTGTCTGAGAGAGAACGCGCGTGGAGTTGATCGGTTTTGAATGCTAACAGTGTGCTGTCCAGCAGAAGAAGAGAAAAAACAATCGCGAAAGGGAACGAAATAAGAAGAGAAGCAAAAGAAAACAAACAGGAAAAGAAGTTGATGAGAAAGATGCTCCATAGGAAATTGAAAAAAAGGACTAGATTAAATGGAAGAACAAAATAGAAGAATGGGGGGAAAGGAAAGGACACAGAGTAAGGAAAGGTGAAAAAAAGCAAAGCAGTAAGGTTTACAAGAGGTGTGTTGGACAAAAAAGGTATAGATAATAA] consensusID : consensus_4506#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [CCGAAAAAACTAATAAAATGGGAAAATAAATAAAGTAAAACAAAAAAAATATATATATATATACATACACACATATATACATAGCTTTGAAAATTGTAAAAAAAACACACACATACACACAAGACGAAGAAAAGAACTAAAAAGCAAACCACATTAACAAGGACAAACGAAAGTAAACGAGAAGAAGTTGATGTGAAAGATGCTCCATAGGAAATTGAAAAAAAGGACTAGATTAAATGGAAGAACAAAACAGAAGAATGGGGGGAAAGGAAAGGACACAGAGTAAGGAAAGGTGGAAAAAGCAAAGCAGTAAGGTTTACAAGTGGTGTGTTGGACAAAAAAGGTATAGATAATAATGAACAGAGAATATATAATTAATGATTAATAAAGACAATT] [+] EMBL BM604909 [CCGAAAAAACTAATAAAATGGGAAAATAAATAAAGTAAAACAAAAAAAATATATATATATATACATACACACATATATACATAGCTTTGAAAATTGTAAAAAAAACACACACATACACACAAGACGAAGAAAAGAACTAAAAAGCAAACCACATTAACAAGGACAAACGAAAGTAAACGAGAAGAAGTTGATGTGAAAGATGCTCCATAGGAAATTGAAAAAAAGGACTAGATTAAATGGAAGAACAAAACAGAAGAATGGGGGGAAAGGAAAGGACACAGAGTAAGGAAAGGTGGAAAAAGCAAAGCAGTAAGGTTTACAAGTGGTGTGTTGGACAAAAAAGGTATAGATAATAATGAACAGAGAATATATAATTAATGATTAATAAAGACAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4506#0 CCGCCCACGCGTCCGCACATACACACAAGACGAAGAAAAGAACTAAAAAGCAAACCACAT 60 consensus_4506#1 ------------------------------------------------------------ consensus_4506#2 ------------------------------------------------------------ consensus_4506#0 TAACAAGGACAAACGAAAGTAAACGAGAAGAAGTAGGGATGAAATAATCGAATAAAAGAC 120 consensus_4506#1 --CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGA---AATAATCGAATAAATGAC 55 consensus_4506#2 ------------------------------------------------------------ consensus_4506#0 AAACAAAAACTACCCAAAACTACCAGAACAACACAAGTAAAGTGAAGAGGGA-AAAACAA 179 consensus_4506#1 AAACAAAAACTACCCAAAACTACCAGAACAACACAAGTAAAGTGAAGAGGGA-AAAACAA 114 consensus_4506#2 ----------------------CCGAAAAAACTAATAAAATGGGAAAATAAATAAAGTAA 38 ** ** *** * ** * *** * * *** ** consensus_4506#0 AACCGCAAACACATGTACGTGCTTCATTGTTATCTATACTAATGCAAATGGGTGGTTGTG 239 consensus_4506#1 AACCGCAAACACATGTACGTGCTTCATTGTTATCTATACTAATGCAAATGGGTGGTTGTG 174 consensus_4506#2 AACAAAAAAAATATATATATA---------TATACATACACACATATATACATAGCTTTG 89 *** *** * ** ** * *** **** * * ** * * * ** consensus_4506#0 GAAGTGTTTCTGTGTCTGAGAGAGAACGCGCGTGGAGTTGATCGGTTTGGAATGCTAACA 299 consensus_4506#1 GATGTGTTTCTGTGTCTGAGAGAGAACGCGCGTGGAGTTGATCGGTTTTGAATGCTAACA 234 consensus_4506#2 AAAAT-----TGT-----AAAAAAAACACACAC------------------ATACACACA 121 * * *** * * * *** * * ** * *** consensus_4506#0 GTGTGCTGTCCAGCAGAAGAAGAGAAAAAACAATCGCGAAAGGGAACGAAATAAGAAGAG 359 consensus_4506#1 GTGTGCTGTCCAGCAGAAGAAGAGAAAAAACAATCGCGAAAGGGAACGAAATAAGAAGAG 294 consensus_4506#2 --------------AGACGAAGAAAAGAACTAA-----AAAGCAAACCACATTAACAAGG 162 *** ***** ** ** ** **** *** * ** * * * consensus_4506#0 AAGCAAAAGAAAACAAACAGGAAAAGAAGTTGATGTGAAAGATGCTCCATAGGAAATTGA 419 consensus_4506#1 AAGCAAAAGAAAACAAACAGGAAAAGAAGTTGATGAGAAAGATGCTCCATAGGAAATTGA 354 consensus_4506#2 A--CAAACGAAAGTAAAC--GAGAAGAAGTTGATGTGAAAGATGCTCCATAGGAAATTGA 218 * **** **** **** ** ************ ************************ consensus_4506#0 AAAAAAAGGACTAGATTAAATGGAAGAACAAAACAGAAGAATGGGGGGAAAGGAAAGGAC 479 consensus_4506#1 AAAAAA-GGACTAGATTAAATGGAAGAACAAAATAGAAGAATGGGGGGAAAGGAAAGGAC 413 consensus_4506#2 AAAAAA-GGACTAGATTAAATGGAAGAACAAAACAGAAGAATGGGGGGAAAGGAAAGGAC 277 ****** ************************** ************************** consensus_4506#0 ACAGAGTAAGGAAAGGTGGAAAAA-GCAAAGCAGTAAGGTTTACAAGTGGTGTGTTGGAC 538 consensus_4506#1 ACAGAGTAAGGAAAGGTGAAAAAAAGCAAAGCAGTAAGGTTTACAAGAGGTGTGTTGGAC 473 consensus_4506#2 ACAGAGTAAGGAAAGGTGGAAAAA-GCAAAGCAGTAAGGTTTACAAGTGGTGTGTTGGAC 336 ****************** ***** ********************** ************ consensus_4506#0 AAAAAAGGTATAGATAATAATGAACAGAGAATATA------------------------- 573 consensus_4506#1 AAAAAAGGTATAGATAATAA---------------------------------------- 493 consensus_4506#2 AAAAAAGGTATAGATAATAATGAACAGAGAATATATAATTAATGATTAATAAAGACAATT 396 ******************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||