cluster # 4516

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Anopheles gambiae
cluster # 4516 cluster # 4516 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4516#0 length = 710 sequences # 2

consensus_4516#1 length = 525 sequences # 1

consensusID : consensus_4516#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 710
fasta sequence

                              [CTCCCCGGTGCGGAATTCCTCGAGCACTGTTGGCCTACTGAAAAAAAACAATACCGGCCCCGGTGCACGGGAAACACGTTTGTAGTAAAAAATAGCTTAAAGTTATAGTTTAACGTACGTAAATAGTTTTCTAACTACGCAAACTCTTAAACAAAATGAGCTCCCTCATCGGCAGTTTGGTTCCACTGTTTCGACGCAGCTTTCTACAGCTGACCGTAGCACGAACTTATGCAACACCAAAGGCCGGAGGTGCTCTCGGTGGGTCGAAAAAGAAAAAGCTCGGCAAGCTCGGGCCGGTAGTGGAGAAGAAGGTCATTCCGGTCGAAACCGATACGAACCGACTGGTAAATTACGTGTGCGGCAGCAACATACTGAAACAGGGTGAGGATATCAAACTGCAGCCCGACTCGGAGTATCCCGATTGGTTGTGGAAGATGCACGTCGGGGCATCG-TTACGCTGGAAGAAATGGACCCAAACACGAAAGCGTACTGGCGAAAGCTAAGGCGAATGG-GCTGCAGCGCAACAACAAGCTGGCCAAGTTGAAAAAGTTCTAAGCGATAAAGCGATGAGAGGGCGAGCACGGTGCTTTTAAAACAAACCACTACCAATCCAGTTTCATAGAAGATAGCACGAAAGCAAAGAGGAATAAATCGTTATAGCTGTACATTGAAAATAAAAAAAACAAAGGCCACATGTGCGAAAAAGAGAG]

[-] EMBL CNS08K0D             [CTCCCCGGTGCGGAATTCCTCGAGCACTGTTGGCCTACTGAAAAAAAACAATACCGGCCCCGGTGCACGGGAAACACGTTTGTAGTAAAAAATAGCTTAAAGTTATAGTTTAACGTACGTAAATAGTTTTCTAACTACGCAAACTCTTAAACAAAATGAGCTCCCTCATCGGCAGTTTGGTTCCACTGTTTCGACGCAGCTTTCTACAGCTGACCGTAGCACGAACTTATGCAACACCAAAGGCCGGAGGTGCTCTCGGTGGGTCGAAAAAGAAAAAGCTCGGCAAGCTCGGGCCGGTAGTGGAGAAGAAGGTCATTCCGGTCGAAACCGATACGAACCGACTGGTAAATTACGTGTGCGGCAGCAACATACTGAAACAGGGTGAGGATATCAAACTGCAGCCCGACTCGGAGTATCCCGATTGGTTGTGGAAGATGCACGTCGGGGCATCG TTACGCTGGAAGAAATGGACCCAAACACGAAAGCGTACTGGCGAAAGCTAAGGCGAATGG GCTGCAGCGCAACAACAAGCTGGCCAAGTTGAAAAAGTTCTAAGCGATAAAGCGATGAGAGGGCGAGCACGGTGCTTTTAAAACAAACCACTACCAATCCAGTTTCATAGAAGATAGCACGAAAG                                                                         ]
[+] EMBL CNS08K0C             [                                                                     GGAAACACGTTTGTAGTAAAAAATAGCTTAAAGTTATAGTTTAACGTACGTAAATAGTTTTCTAACTACGCAAACTCTTAAACAAAATGAGCTCCCTCATCGGCAGTTTGGTTCCACTGTTTCGACGCAGCTTTCTACAGCTGACCGTAGCACGAACTTATGCAACACCAAAGGCCGGAGGTGCTCTCGGTGGGTCGAAAAAGAAAAAGCTCGGCAAGCTCGGGCCGGTAGTGGAGAAGAAGGTCATTCCGGTCGAAACCGATACGAACCGACTGGTAAATTACGTGTGCGGCAGCAACATACTGAAACAGGGTGAGGATATCAAACTGCAGCCCGACTCGGAGTATCCCGATTGGTTGTGGAAGATGCACGTCGGGGCACCGCTTACGCTGGAAGAAATGGACCCAAACACGAAAGCGTACTGGCGAAAGCTAAGGCGAATGGCGCTGCAGCGCAACAACAAGCTGGCCAAGTTGAAAAAGTTCTAAGCGATAAAGCGATGAGAGGGCGAGCACGGTGCTTTTAAAACAAACCACTACCAATCCAGTTTCATAGAAGATAGCACGAAAGCAAAGAGGAATAAATCGTTATAGCTGTACATTGAAAATAAAAAAAACAAAGGCCACATGTGCGAAAAAGAGAG]




>consensus_4516#0
CTCCCCGGTGCGGAATTCCTCGAGCACTGTTGGCCTACTGAAAAAAAACAATACCGGCCC
CGGTGCACGGGAAACACGTTTGTAGTAAAAAATAGCTTAAAGTTATAGTTTAACGTACGT
AAATAGTTTTCTAACTACGCAAACTCTTAAACAAAATGAGCTCCCTCATCGGCAGTTTGG
TTCCACTGTTTCGACGCAGCTTTCTACAGCTGACCGTAGCACGAACTTATGCAACACCAA
AGGCCGGAGGTGCTCTCGGTGGGTCGAAAAAGAAAAAGCTCGGCAAGCTCGGGCCGGTAG
TGGAGAAGAAGGTCATTCCGGTCGAAACCGATACGAACCGACTGGTAAATTACGTGTGCG
GCAGCAACATACTGAAACAGGGTGAGGATATCAAACTGCAGCCCGACTCGGAGTATCCCG
ATTGGTTGTGGAAGATGCACGTCGGGGCATCGTTACGCTGGAAGAAATGGACCCAAACAC
GAAAGCGTACTGGCGAAAGCTAAGGCGAATGGGCTGCAGCGCAACAACAAGCTGGCCAAG
TTGAAAAAGTTCTAAGCGATAAAGCGATGAGAGGGCGAGCACGGTGCTTTTAAAACAAAC
CACTACCAATCCAGTTTCATAGAAGATAGCACGAAAGCAAAGAGGAATAAATCGTTATAG
CTGTACATTGAAAATAAAAAAAACAAAGGCCACATGTGCGAAAAAGAGAG

consensusID : consensus_4516#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 525
fasta sequence

                              [CGCCCGAGGTTTACTGGTGACGGGAAACACTTGGTTACTAANAAANAATAGCTTAAACTTATAGTTTAACGGTCGGGAAATAGTTTGTCTAACTNGGGCAAACTCTCAAACACATATGAGCTCCCTCATCGGGAGTNTATGGTTCCCCATGGGTCGACGCAGGCTTTCTACAGCCTGACCGTAGCGCGAACTTATGCAACAACCAAAGGCCGCGTGGTGCTCTCTCGATGGGTCAACATACAAGAAACAAGCTCGGCAAGGCTCGTGGCCGGTAGATGGAGTAACGAAGGTCTATNCCGGGTCGAAACCGATACTGAACCGGACTGGGTAAATTCACGTGTTGCGNGCCAGCACACATTACTGTAAACAGGGGGAGGATATCAAACTGCNACGCCGACTCGGAGTATCCCGATTGGTTGTAGGAAGATGCACGTCGGGGCACCGCTTACGCTGGAAGAAANTGGAGCCCAAACACGGAAAGCGTACTGGCGACAAGCTAAGGCGAATGTGCGCTGCANGCGCAAC]

[+] EMBL AL933168             [CGCCCGAGGTTTACTGGTGACGGGAAACACTTGGTTACTAANAAANAATAGCTTAAACTTATAGTTTAACGGTCGGGAAATAGTTTGTCTAACTNGGGCAAACTCTCAAACACATATGAGCTCCCTCATCGGGAGTNTATGGTTCCCCATGGGTCGACGCAGGCTTTCTACAGCCTGACCGTAGCGCGAACTTATGCAACAACCAAAGGCCGCGTGGTGCTCTCTCGATGGGTCAACATACAAGAAACAAGCTCGGCAAGGCTCGTGGCCGGTAGATGGAGTAACGAAGGTCTATNCCGGGTCGAAACCGATACTGAACCGGACTGGGTAAATTCACGTGTTGCGNGCCAGCACACATTACTGTAAACAGGGGGAGGATATCAAACTGCNACGCCGACTCGGAGTATCCCGATTGGTTGTAGGAAGATGCACGTCGGGGCACCGCTTACGCTGGAAGAAANTGGAGCCCAAACACGGAAAGCGTACTGGCGACAAGCTAAGGCGAATGTGCGCTGCANGCGCAAC]




>consensus_4516#1
CGCCCGAGGTTTACTGGTGACGGGAAACACTTGGTTACTAANAAANAATAGCTTAAACTT
ATAGTTTAACGGTCGGGAAATAGTTTGTCTAACTNGGGCAAACTCTCAAACACATATGAG
CTCCCTCATCGGGAGTNTATGGTTCCCCATGGGTCGACGCAGGCTTTCTACAGCCTGACC
GTAGCGCGAACTTATGCAACAACCAAAGGCCGCGTGGTGCTCTCTCGATGGGTCAACATA
CAAGAAACAAGCTCGGCAAGGCTCGTGGCCGGTAGATGGAGTAACGAAGGTCTATNCCGG
GTCGAAACCGATACTGAACCGGACTGGGTAAATTCACGTGTTGCGNGCCAGCACACATTA
CTGTAAACAGGGGGAGGATATCAAACTGCNACGCCGACTCGGAGTATCCCGATTGGTTGT
AGGAAGATGCACGTCGGGGCACCGCTTACGCTGGAAGAAANTGGAGCCCAAACACGGAAA
GCGTACTGGCGACAAGCTAAGGCGAATGTGCGCTGCANGCGCAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4516#0      CTCCCCGGTGCGGAATTCCTCGAGCACTGTTGGCCTACTGAAAAAAAACAATACCGGCCC 60
consensus_4516#1      ----------------------------------------------CGCCCGAGGTTTAC 14
                                                                      *   *      *

consensus_4516#0      CGGTGCACGGGAAACAC---GTTTGTAGTAAAAAATAGCTTAAAGTTATAGTTTAACGTA 117
consensus_4516#1      TGGTG-ACGGGAAACACTTGGTTACTAANAAANAATAGCTTAAACTTATAGTTTAACGGT 73
                       **** ***********   ***  **  *** *********** *************  

consensus_4516#0      CGT-AAATAGTTT-TCTAACTACG-CAAACTCTTAAACAAA-ATGAGCTCCCTCATCGGC 173
consensus_4516#1      CGGGAAATAGTTTGTCTAACTNGGGCAAACTCTCAAACACATATGAGCTCCCTCATCGGG 133
                      **  ********* *******  * ******** ***** * ***************** 

consensus_4516#0      AGTTT--GGTTCCAC-TGTTTCGACGCAG-CTTTCTACAGC-TGACCGTAGCACGAACTT 228
consensus_4516#1      AGTNTATGGTTCCCCATGGGTCGACGCAGGCTTTCTACAGCCTGACCGTAGCGCGAACTT 193
                      *** *  ****** * **  ********* *********** ********** *******

consensus_4516#0      ATGCAACA-CCAAAGGCCG-GAGGTGCTCTC--GGTGGGTCGAAA---AAGAAA-AAGCT 280
consensus_4516#1      ATGCAACAACCAAAGGCCGCGTGGTGCTCTCTCGATGGGTCAACATACAAGAAACAAGCT 253
                      ******** ********** * *********  * ****** * *   ****** *****

consensus_4516#0      CGGCAAG-CTCG-GGCCGGTAG-TGGAGAA--GAAGGTC-ATTCCGG-TCGAAACCGATA 333
consensus_4516#1      CGGCAAGGCTCGTGGCCGGTAGATGGAGTAACGAAGGTCTATNCCGGGTCGAAACCGATA 313
                      ******* **** ********* ***** *  ******* ** **** ************

consensus_4516#0      C-GAACCG-ACTGG-TAAATT-ACGTGT---GCGGCAGCA-ACAT-ACTG-AAACAGGGT 383
consensus_4516#1      CTGAACCGGACTGGGTAAATTCACGTGTTGCGNGCCAGCACACATTACTGTAAACAGGGG 373
                      * ****** ***** ****** ******   * * ***** **** **** ******** 

consensus_4516#0      GAGGATATCAAACTGCAGC-CCGACTCGGAGTATCCCGATTGGTTGT-GGAAGATGCACG 441
consensus_4516#1      GAGGATATCAAACTGCNACGCCGACTCGGAGTATCCCGATTGGTTGTAGGAAGATGCACG 433
                      ****************  * *************************** ************

consensus_4516#0      TCGGGGCATCG-TTACGCTGGAAGAAAT--GGACCCAAACACG-AAAGCGTACTGGCGA- 496
consensus_4516#1      TCGGGGCACCGCTTACGCTGGAAGAAANTGGAGCCCAAACACGGAAAGCGTACTGGCGAC 493
                      ******** ** ***************   *  ********** *************** 

consensus_4516#0      AAGCTAAGGCGAATGGGCTGCAGCGCAACAACAAGCTGGCCAAGTTGAAAAAGTTCTAAG 556
consensus_4516#1      AAGCTAAGGCGAATG---TGCGCTGCANGCGCAAC------------------------- 525
                      ***************   ***   ***    ***                          

consensus_4516#0      CGATAAAGCGATGAGAGGGCGAGCACGGTGCTTTTAAAACAAACCACTACCAATCCAGTT 616
consensus_4516#1      ------------------------------------------------------------
                                                                                  

consensus_4516#0      TCATAGAAGATAGCACGAAAGCAAAGAGGAATAAATCGTTATAGCTGTACATTGAAAATA 676
consensus_4516#1      ------------------------------------------------------------
                                                                                  

consensus_4516#0      AAAAAAACAAAGGCCACATGTGCGAAAAAGAGAG 710
consensus_4516#1      ----------------------------------