cluster # 4520

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Anopheles gambiae
cluster # 4520 cluster # 4520 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4520#0 length = 610 sequences # 1

consensus_4520#1 length = 489 sequences # 2

consensusID : consensus_4520#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence

                              [ACAGAAACTATATTGTTATGTGAAGATCCCAGACCCTCTCAGATCTGGCAAAACTCTTCTAATTGCTACATTTCCTCCGTCTCTCCCGCTGCGTATCATTATTGCTAACACCGCCCAATCCTTCCAGACAGTAGAGGCAGCAGCAACCACATGGCTCGCTGAACGCCGGACAGTTTGTTGTAGTCGGCCAGATGACGCCACAAGATACGGCTAACGCGCCACCGGTGCACGAAACCGCGTGACCGACGTTACTGCGCACCGTTCGCGTACCCGCACCAGCGAGGAGTCGCGCGGAAACGCCTCAATCTCTTTGCTGGCAATTTCCCGCAGTCCCACCGGCAGGATCGTGTTCTTCCGCAGTGAGTAAACGCGCACCGGGCGTCGGCATGCTGCACCACGCACTGGCGACGTTTGTGGTCCTTGATCATACGCCAGTGGGCCCATTTGTTGCGTACTTGCTGGAGCCGATAGCCGGCCAAATTTTGGCCACACGTTACAAATCGGGATAAAAAACCCACCACCGACATTGTGAACTGGTCGCGAGCCCCTCGTTTTGCACCGGCTCCAGTGGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTTAAGAGCA]

[+] EMBL CNS09PXL             [ACAGAAACTATATTGTTATGTGAAGATCCCAGACCCTCTCAGATCTGGCAAAACTCTTCTAATTGCTACATTTCCTCCGTCTCTCCCGCTGCGTATCATTATTGCTAACACCGCCCAATCCTTCCAGACAGTAGAGGCAGCAGCAACCACATGGCTCGCTGAACGCCGGACAGTTTGTTGTAGTCGGCCAGATGACGCCACAAGATACGGCTAACGCGCCACCGGTGCACGAAACCGCGTGACCGACGTTACTGCGCACCGTTCGCGTACCCGCACCAGCGAGGAGTCGCGCGGAAACGCCTCAATCTCTTTGCTGGCAATTTCCCGCAGTCCCACCGGCAGGATCGTGTTCTTCCGCAGTGAGTAAACGCGCACCGGGCGTCGGCATGCTGCACCACGCACTGGCGACGTTTGTGGTCCTTGATCATACGCCAGTGGGCCCATTTGTTGCGTACTTGCTGGAGCCGATAGCCGGCCAAATTTTGGCCACACGTTACAAATCGGGATAAAAAACCCACCACCGACATTGTGAACTGGTCGCGAGCCCCTCGTTTTGCACCGGCTCCAGTGGGCCAACAGTTCTCGAGGAATTCCGCAGCTTTTAAGAGCA]




>consensus_4520#0
ACAGAAACTATATTGTTATGTGAAGATCCCAGACCCTCTCAGATCTGGCAAAACTCTTCT
AATTGCTACATTTCCTCCGTCTCTCCCGCTGCGTATCATTATTGCTAACACCGCCCAATC
CTTCCAGACAGTAGAGGCAGCAGCAACCACATGGCTCGCTGAACGCCGGACAGTTTGTTG
TAGTCGGCCAGATGACGCCACAAGATACGGCTAACGCGCCACCGGTGCACGAAACCGCGT
GACCGACGTTACTGCGCACCGTTCGCGTACCCGCACCAGCGAGGAGTCGCGCGGAAACGC
CTCAATCTCTTTGCTGGCAATTTCCCGCAGTCCCACCGGCAGGATCGTGTTCTTCCGCAG
TGAGTAAACGCGCACCGGGCGTCGGCATGCTGCACCACGCACTGGCGACGTTTGTGGTCC
TTGATCATACGCCAGTGGGCCCATTTGTTGCGTACTTGCTGGAGCCGATAGCCGGCCAAA
TTTTGGCCACACGTTACAAATCGGGATAAAAAACCCACCACCGACATTGTGAACTGGTCG
CGAGCCCCTCGTTTTGCACCGGCTCCAGTGGGCCAACAGTTCTCGAGGAATTCCGCAGCT
TTTAAGAGCA

consensusID : consensus_4520#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 489
fasta sequence

                              [GCGTATCATTATTGCTAACACCGCCCAATCCATCCAGACAGT--AGGCAGCAGCTACCACATGGCTCGCTGAACGCCGGACAGTTTGTTGTAGTCGGCCAGATGACGCCACACGATACGGCTAACGCGCCACCGGTGCACGATACCGCGTGAGCGTGACGTTACTGCGCACCGTTCGCGTACCCGTACCAGCGAGGAGTCGCGCGGAAACGCTTCAATCTCTTTGCTGGCAATTTCCCGCAGTTCCACCGGCAGGATCGTGTTCTTCCGCAGTGAGTTAACGCGCAGCCGGGCGTCGGCATGCTGCACCACGCACTGGCGACGTTTGTGGTCCTTGATCATACGCCAGTCGGCCCATTTGTTGCGTACTTGCTGGAGCCGATAGCCGGCCAAATGTTGGCCACACGTTACAAATCGGGATACAAAACCCACCACCGACATTGTGAACTGGTCGCGAGCACCTCGTTTTGCACCGGCTGATGTTGTTTTCGG]

[-] EMBL BM644461             [GCGTATCATTATTGCTAACACCGCCCAATCCATCCAGACAGT  AGGCAGCAGCTACCACATGGCTCGCTGAACGCCGGACAGTTTGTTGTAGTCGGCCAGATGACGCCACACGATACGGCTAACGCGCCACCGGTGCACGATACCGCGTGAGCGTGACGTTACTGCGCACCGTTCGCGTACCCGTACCAGCGAGGAGTCGCGCGGAAACGCTTCAATCTCTTTGCTGGCAATTTCCCGCAGTTCCACCGGCAGGATCGTGTTCTTCCGCAGTGAGTTAACGCGCAGCCGGGCGTCGGCATGCTGCACCACGCACTGGCGACGTTTGTGGTCCTTGATCATACGCCAGTCGGCCCATTTGTTGCGTACTTGCTGGAGCCGATAGCCGGCCAAATGTTGGCCACACGTTACAAATCGGGATACAAAACCCACCACCGACATTGTGAACTGGTCGCGAGCACCTCGTTTTGCACCGGCTGATGTTGTTTTCGG]
[-] EMBL CNS09PXK             [                  ttttGCCCAATCCTTCCAGACAGTAGAGGCAGCAGCTACCACATGGCTCGCTGAACGCCGGACAGTTTGTTGTAGTCGGCCAGATGACGCCACACGATACGG TAACGCGCCACCGGTGCACGATACCGCGTGAGCGCGACGTTACTGCGCACCGTTCGCGTACCCGCACCAGCGAGGAGTCGCGCGGAAACGCCTCAATCTCTTTGCTGGCAATTTCCCGCAGTTCCACCGGCAGGATCGTGTTCTTCCGCAGTGAGTTAACGCGCAGCCGGGCGTCGGCATGCTGCACCACGCACTGGCGACGTTTGTGGTCCTTGATCATACGCCAGTCGGCCCATTTGTTGCGTACTTGCTGGAGCCGATAGCCGGCCAAATTTTGGCCACACGTTACAAATCGGGATACAAAACCCACCACCGACATTGTGAACTGGTCGCGAGCACCT                             ]




>consensus_4520#1
GCGTATCATTATTGCTAACACCGCCCAATCCATCCAGACAGTAGGCAGCAGCTACCACAT
GGCTCGCTGAACGCCGGACAGTTTGTTGTAGTCGGCCAGATGACGCCACACGATACGGCT
AACGCGCCACCGGTGCACGATACCGCGTGAGCGTGACGTTACTGCGCACCGTTCGCGTAC
CCGTACCAGCGAGGAGTCGCGCGGAAACGCTTCAATCTCTTTGCTGGCAATTTCCCGCAG
TTCCACCGGCAGGATCGTGTTCTTCCGCAGTGAGTTAACGCGCAGCCGGGCGTCGGCATG
CTGCACCACGCACTGGCGACGTTTGTGGTCCTTGATCATACGCCAGTCGGCCCATTTGTT
GCGTACTTGCTGGAGCCGATAGCCGGCCAAATGTTGGCCACACGTTACAAATCGGGATAC
AAAACCCACCACCGACATTGTGAACTGGTCGCGAGCACCTCGTTTTGCACCGGCTGATGT
TGTTTTCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4520#0      ACAGAAACTATATTGTTATGTGAAGATCCCAGACCCTCTCAGATCTGGCAAAACTCTTCT 60
consensus_4520#1      ------------------------------------------------------------
                                                                                  

consensus_4520#0      AATTGCTACATTTCCTCCGTCTCTCCCGCTGCGTATCATTATTGCTAACACCGCCCAATC 120
consensus_4520#1      ------------------------------GCGTATCATTATTGCTAACACCGCCCAATC 30
                                                    ******************************

consensus_4520#0      CTTCCAGACAGTAGAGGCAGCAGCAACCACATGGCTCGCTGAACGCCGGACAGTTTGTTG 180
consensus_4520#1      CATCCAGACAGTA--GGCAGCAGCTACCACATGGCTCGCTGAACGCCGGACAGTTTGTTG 88
                      * ***********  ********* ***********************************

consensus_4520#0      TAGTCGGCCAGATGACGCCACAAGATACGGCTAACGCGCCACCGGTGCACGAAACCGCGT 240
consensus_4520#1      TAGTCGGCCAGATGACGCCACACGATACGGCTAACGCGCCACCGGTGCACGATACCGCGT 148
                      ********************** ***************************** *******

consensus_4520#0      GACCG--ACGTTACTGCGCACCGTTCGCGTACCCGCACCAGCGAGGAGTCGCGCGGAAAC 298
consensus_4520#1      GAGCGTGACGTTACTGCGCACCGTTCGCGTACCCGTACCAGCGAGGAGTCGCGCGGAAAC 208
                      ** **  **************************** ************************

consensus_4520#0      GCCTCAATCTCTTTGCTGGCAATTTCCCGCAGTCCCACCGGCAGGATCGTGTTCTTCCGC 358
consensus_4520#1      GCTTCAATCTCTTTGCTGGCAATTTCCCGCAGTTCCACCGGCAGGATCGTGTTCTTCCGC 268
                      ** ****************************** **************************

consensus_4520#0      AGTGAGTAAACGCGCA-CCGGGCGTCGGCATGCTGCACCACGCACTGGCGACGTTTGTGG 417
consensus_4520#1      AGTGAGTTAACGCGCAGCCGGGCGTCGGCATGCTGCACCACGCACTGGCGACGTTTGTGG 328
                      ******* ******** *******************************************

consensus_4520#0      TCCTTGATCATACGCCAGTGGGCCCATTTGTTGCGTACTTGCTGGAGCCGATAGCCGGCC 477
consensus_4520#1      TCCTTGATCATACGCCAGTCGGCCCATTTGTTGCGTACTTGCTGGAGCCGATAGCCGGCC 388
                      ******************* ****************************************

consensus_4520#0      AAATTTTGGCCACACGTTACAAATCGGGATAAAAAACCCACCACCGACATTGTGAACTGG 537
consensus_4520#1      AAATGTTGGCCACACGTTACAAATCGGGATACAAAACCCACCACCGACATTGTGAACTGG 448
                      **** ************************** ****************************

consensus_4520#0      TCGCGAGCCCCTCGTTTTGCACCGGCTCCAGTGGGCCAACAGTTCTCGAGGAATTCCGCA 597
consensus_4520#1      TCGCGAGCACCTCGTTTTGCACCGGCTGATGTTG--------TTTTCGG----------- 489
                      ******** ******************   ** *        ** ***            

consensus_4520#0      GCTTTTAAGAGCA 610
consensus_4520#1      -------------