cluster # 4524

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4524 cluster # 4524 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4524#0 length = 613 sequences # 1

consensus_4524#1 length = 533 sequences # 2

consensusID : consensus_4524#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence

                              [CCGCCGCATCCACCGCTGCAGAGCTGCACCAGAAATCCTTTCTGACAAACGAGCGTGGTGGGAACAGTTGCGAGAGGGATCTGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCAGCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGAGATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACAGAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCCAGGAACCATTAGTGCCGGTGACGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGTCGAAAAGCCAGCGACGGTTTCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGCGCGGAACGCGGAGCGTATGCGCCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAAGCGGATGGCCCAGAACGCGGAAAGGATGCGGAAGCGGCGGGCGGCCGAATCGGAGGAGGAGTACCGGAATCGGATGCACCGCAACGCGGAAAACAAGTACAGCGAGGAGTACCAGATACGGCTGGCGAAAACG]

[+] EMBL BM578286             [CCGCCGCATCCACCGCTGCAGAGCTGCACCAGAAATCCTTTCTGACAAACGAGCGTGGTGGGAACAGTTGCGAGAGGGATCTGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCAGCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGAGATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACAGAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCCAGGAACCATTAGTGCCGGTGACGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGTCGAAAAGCCAGCGACGGTTTCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGCGCGGAACGCGGAGCGTATGCGCCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAAGCGGATGGCCCAGAACGCGGAAAGGATGCGGAAGCGGCGGGCGGCCGAATCGGAGGAGGAGTACCGGAATCGGATGCACCGCAACGCGGAAAACAAGTACAGCGAGGAGTACCAGATACGGCTGGCGAAAACG]




>consensus_4524#0
CCGCCGCATCCACCGCTGCAGAGCTGCACCAGAAATCCTTTCTGACAAACGAGCGTGGTG
GGAACAGTTGCGAGAGGGATCTGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCA
AGCATGTAAACACACCAACCAGCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATA
CTATAATGACATTAAGCAAGAGATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGAC
CACCTTGCCGCAAACAATACAGAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCC
AGGAACCATTAGTGCCGGTGACGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCT
GTCGAAAAGCCAGCGACGGTTTCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGC
GCGGAACGCGGAGCGTATGCGCCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAA
GCGGATGGCCCAGAACGCGGAAAGGATGCGGAAGCGGCGGGCGGCCGAATCGGAGGAGGA
GTACCGGAATCGGATGCACCGCAACGCGGAAAACAAGTACAGCGAGGAGTACCAGATACG
GCTGGCGAAAACG

consensusID : consensus_4524#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 533
fasta sequence

                              [CCGGGCTTTGCGAAAAAGAAAAGTTGTGTTTTGAACAGAGATTTCTTTTTTTGTACCACACTTGCGCTTCCAGATCCTTTCTGACAAACGAGCGTGGTGGGAACAGTTGCGAGAGGGATCTGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCAGCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGAGATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACAGAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCCAGGAACCATTAGTGCCGGTGACGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGTCGAAAAGCCAGCGACGGTTTCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGCGCGGAACGCGGAGCGTATGCGCCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAAGCGGATGGCCCAGA]

[+] EMBL BM625230             [CCGGGCTTTGCGAAAAAGAAAAGTTGTGTTTTGAACAGAGATTTCTTTTTTTGTACCACACTTGCGCTTCCAGATCCTTTCTGACAAACGAGCGTGGTGGGAACAGTTGCGAGAGGGATCTGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCAGCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGAGATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACAGAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCCAGGAACCATTAGTGCCGGTGACGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGTCGAAAAGCCAGCGACGGTTTCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGCGCGGAACGCGGAGCGTATGCGCCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAAGCGGATGGCCCAGA]
[+] EMBL BM653454             [                                                                                        CGAGCGTGGTGGGAACAGTTGCGAGAGGGATCTGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCAGCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGAGATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACAGAGCAGCGTCCCGCAACAACTACAGCAGCATCAGCAGCCAGGAACCATTAGTGCCGGTGACGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGGCGAAAAGCCAGCGACGGTTTCTGCACGAAAGCCCCGAA                                                                                              ]




>consensus_4524#1
CCGGGCTTTGCGAAAAAGAAAAGTTGTGTTTTGAACAGAGATTTCTTTTTTTGTACCACA
CTTGCGCTTCCAGATCCTTTCTGACAAACGAGCGTGGTGGGAACAGTTGCGAGAGGGATC
TGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCA
GCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGA
GATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACA
GAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCCAGGAACCATTAGTGCCGGTGA
CGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGTCGAAAAGCCAGCGACGGTT
TCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGCGCGGAACGCGGAGCGTATGCG
CCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAAGCGGATGGCCCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4524#0      --------------------------------------CCGCCGCATCCACCGCTGCAGA 22
consensus_4524#1      CCGGGCTTTGCGAAAAAGAAAAGTTGTGTTTTGAACAGAGATTTCTTTTTTTGTACCACA 60
                                                                  * *     *   ** *

consensus_4524#0      GCTGCACCAG-AAATCCTTTCTGACAAACGAGCGTGGTGGGAACAGTTGCGAGAGGGATC 81
consensus_4524#1      CTTGCGCTTCCAGATCCTTTCTGACAAACGAGCGTGGTGGGAACAGTTGCGAGAGGGATC 120
                        *** *    * ***********************************************

consensus_4524#0      TGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCA 141
consensus_4524#1      TGCTGGCACCCCGCACCCGTGCGCGCTCCCGTAAAGGCAAGCATGTAAACACACCAACCA 180
                      ************************************************************

consensus_4524#0      GCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGA 201
consensus_4524#1      GCAACTAAATATGAATGGATTCTTTCAGCTCAATCCATACTATAATGACATTAAGCAAGA 240
                      ************************************************************

consensus_4524#0      GATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACA 261
consensus_4524#1      GATCGTGGTCCCATACGCAGCAGCACCTGTCGTGGCGACCACCTTGCCGCAAACAATACA 300
                      ************************************************************

consensus_4524#0      GAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCCAGGAACCATTAGTGCCGGTGA 321
consensus_4524#1      GAGCAGCGTCCCGCAACAACTACAGCAGCAGCAGCAGCCAGGAACCATTAGTGCCGGTGA 360
                      ************************************************************

consensus_4524#0      CGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGTCGAAAAGCCAGCGACGGTT 381
consensus_4524#1      CGATCGTTCCGTAAGCGTACCGCACCACCTGTCGCCCCTGTCGAAAAGCCAGCGACGGTT 420
                      ************************************************************

consensus_4524#0      TCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGCGCGGAACGCGGAGCGTATGCG 441
consensus_4524#1      TCTGCACGAAAGCCCCGAAGCCCGGGCGAAGCGGTTGGCGCGGAACGCGGAGCGTATGCG 480
                      ************************************************************

consensus_4524#0      CCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAAGCGGATGGCCCAGAACGCGGA 501
consensus_4524#1      CCAGAAGCGGGCCGCCGAATCGGAGGACGAGTACCGCAAGCGGATGGCCCAGA------- 533
                      *****************************************************       

consensus_4524#0      AAGGATGCGGAAGCGGCGGGCGGCCGAATCGGAGGAGGAGTACCGGAATCGGATGCACCG 561
consensus_4524#1      ------------------------------------------------------------
                                                                                  

consensus_4524#0      CAACGCGGAAAACAAGTACAGCGAGGAGTACCAGATACGGCTGGCGAAAACG 613
consensus_4524#1      ----------------------------------------------------