These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4531#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 710 fasta sequence [AGCAGATCGGCACGAGGTGAACGCGGCCGTACAATGAAGTTGCGTTCTGTCCTGTGCTATTGGTGCGCTCCTGTGCGCTTCGTTAGGAACGATTTACGCATCGGATGCAACCATATCAGGAGATGACGATGAAAGGTCCAGGAGACAGAGGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATCGAGATGATTCAGTACGAGGCCAACGATGTACACCGCCAAATGCTGAAGCTGAAAGTAAAGACCTTCCACGAACCAGCACTACTACTACTAGAACGGGCCACGAAGAAACGGANAACGGACTGCGTGCTGGAAGTACGTCGTCGTANCGTCAANCAGCAAGCCACCACAGGACAGCCCGTTAAGTACCGCTAAGCCTGCAGATGCAACACTGTCGCCCACCAGCCCGCACAGACCGGGCTACTACGGTCCAGCAAAGCCCCCGCCAACGGTTGTGACCACGACGACGGGGAAACCGACCACCACTTCGAGCACCACGACTACTGAGATGCCCAAAGTGAACGAAAGTCCCACCACCGAGACGCTGCTGTGGAGTGATAAACCGTTTGCCGAGTGGTTCTTGCAAAGCAAGCGCAAGAAGGGTCAGCCGATCTCTTCCCTGAACGTGCAGCTGTTAGATCCGCTGNCACTGCGGGTACTGCAGGACTTTAACCGCGAACCGTA] [+] EMBL BX469383 [AGCAGATCGGCACGAGGTGAACGCGGCCGTACAATGAAGTTGCGTTCTGTCCTGTGCTATTGGTGCGCTCCTGTGCGCTTCGTTAGGAACGATTTACGCATCGGATGCAACCATATCAGGAGATGACGATGAAAGGTCCAGGAGACAGAGGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATCGAGATGATTCAGTACGAGGCCAACGATGTACACCGCCAAATGCTGAAGCTGAAAGTAAAGACCTTCCACGAACCAGCACTACTACTACTAGAACGGGCCACGAAGAAACGGANAACGGACTGCGTGCTGGAAGTACGTCGTCGTANCGTCAAN ] [+] EMBL BX620326 [ ATTGGTGCGCTCCTGTGCGCTTCGTTAGGAACGATTTACGCATCGGATGCAACCATATCAGCAGATGACGATGAAAGGT CAGGAGACAGAGGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATCGAGATGATTCAGTACGA GCCAACGATG ACACCGCCAAATGCTGAAGCTGAAA TAAA ACCTTCCAC AACCACCACTACTACTACTA AACGGCCCAC AA CAAC GACAAC GACTGC TGCTGGAAGTACGTCGTC TA CCTCAACCAGCAAGCCACCACAGGACAGCCCGTTAAGTACCGCTAAGCCTGCAGATGCAACACTGTCGCCCACCAGCCCGCACAGACCGGGCTACTACGGTCCAGCAAAGCCCCCGCCAACGGTTGTGACCACGACGACGGGGAAACCGACCACCACTTCGAGCACCACGACTACTGAGATGCCCAAAGTGAACGAAAGTCCCACCACCGAGACGCTGCTGTGGAGTGATAAACCGTTTGCCGAGTGGTTCTTGCAAAGCAAGCGCAAGAAGGGTCAGCCGATCTCTTCCCTGAACGTGCAGCTGTTAGATCCGCTGNCACTGCGGGTACTGCAGGACTTTAACCGCGAACCGTA] consensusID : consensus_4531#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [GGCCAGAATCGGCACGTGGAGACGCCGTACGAATTGGTCGACTTGCGACGCGCGGCCGTACAATGAAGTTGGTTCTGTCCTGTGCTATTGGTGCGCTCCTGTGCGCTTCGTTAGGAACGATTTACGCATCGGATGCAACCATATCAGCAGATGACGATAAAGGTCAGGAGACAGAGGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATCGAGATGATTCAGTACGAGCCAACGATGACACCGCCAAATGCTGAAGCTGAAATAAAACCTTCCACAACCACCACTACTACTACTAAACGGCCACAACAACGACACGACTGCTGCTGGAAGTACGTCGTCTACCTCAACCAGCAAGCCACCACAGGACAGCCCGTTAGTACCGCTAGCCTGCAGATGCAACGACTGTCGCCACCAGCCCGACAGACCGGGCTACTACGGTCCAGCGAAAGCCCCCGGCAACGGTTGTGACCACGACGGACGGGGAAACGAACAGCGAATTTCGAGCACCACGATACTGTCGATTGGCCAAAAGTTGAACGAAAAGTCCCACACGAGACGNTGTGTTGGAAGTGATAAAGCGGNTTTGNCGGAGTGGTTCTTGCAAAAGTAAGCGCAAGAAGGTTCAGCCGAATTCTTNCCTTAAAGGTGCAGTGTTAG] [+] EMBL BX469823 [GGCCAGAATCGGCACGTGGAGACGCCGTACGAATTGGTCGACTTGCGACGCGCGGCCGTACAATGAAGTTGGTTCTGTCCTGTGCTATTGGTGCGCTCCTGTGCGCTTCGTTAGGAACGATTTACGCATCGGATGCAACCATATCAGCAGATGACGATAAAGGTCAGGAGACAGAGGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATCGAGATGATTCAGTACGAGCCAACGATGACACCGCCAAATGCTGAAGCTGAAATAAAACCTTCCACAACCACCACTACTACTACTAAACGGCCACAACAACGACACGACTGCTGCTGGAAGTACGTCGTCTACCTCAACCAGCAAGCCACCACAGGACAGCCCGTTAGTACCGCTAGCCTGCAGATGCAACGACTGTCGCCACCAGCCCGACAGACCGGGCTACTACGGTCCAGCGAAAGCCCCCGGCAACGGTTGTGACCACGACGGACGGGGAAACGAACAGCGAATTTCGAGCACCACGATACTGTCGATTGGCCAAAAGTTGAACGAAAAGTCCCACACGAGACGNTGTGTTGGAAGTGATAAAGCGGNTTTGNCGGAGTGGTTCTTGCAAAAGTAAGCGCAAGAAGGTTCAGCCGAATTCTTNCCTTAAAGGTGCAGTGTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4531#0 -------------------------------AGCAGATCGGCACGAGGTGAACGCGGCCG 29 consensus_4531#1 GGCCAGAATCGGCACGTGGAGACGCCGTACGAATTGGTCGACTTGCGACG--CGCGGCCG 58 * * *** * * * * ******** consensus_4531#0 TACAATGAAGTTGCGTTCTGTCCTGTGCTATTGGTGCGCTCCTGTGCGCTTCGTTAGGAA 89 consensus_4531#1 TACAATGAAGTTG-GTTCTGTCCTGTGCTATTGGTGCGCTCCTGTGCGCTTCGTTAGGAA 117 ************* ********************************************** consensus_4531#0 CGATTTACGCATCGGATGCAACCATATCAGGAGATGACGATGAAAGGTCCAGGAGACAGA 149 consensus_4531#1 CGATTTACGCATCGGATGCAACCATATCAGCAGATGACGATAAAGG--TCAGGAGACAGA 175 ****************************** ********** ** * *********** consensus_4531#0 GGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATC 209 consensus_4531#1 GGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATC 235 ************************************************************ consensus_4531#0 GAGATGATTCAGTACGAGGCCAACGATGTACACCGCCAAATGCTGAAGCTGAAAGTAAAG 269 consensus_4531#1 GAGATGATTCAGTACGAG-CCAACGATG-ACACCGCCAAATGCTGAAGCTGAAAT--AAA 291 ****************** ********* ************************* ** consensus_4531#0 ACCTTCCACGAACCAGCACTACTACTACTAGAACGGGCCACGAAGAAACGGANAACGGAC 329 consensus_4531#1 ACCTTCCAC-AACCACCACTACTACTACTAAAC--GGCCAC-----AACAACGACACGAC 343 ********* ***** ************** * ****** *** * *** consensus_4531#0 TGCGTGCTGGAAGTACGTCGTCGTANCGTCAANCAGCAAGCCACCACAGGACAGCCCGTT 389 consensus_4531#1 TGC-TGCTGGAAGTACGTCGTC-TACC-TCAACCAGCAAGCCACCACAGGACAGCCCGTT 400 *** ****************** ** * **** *************************** consensus_4531#0 AAGTACCGCTAAGCCTGCAGATGCAAC-ACTGTCGCCCACCAGCCCGCACAGACCGGGCT 448 consensus_4531#1 A-GTACCGCTA-GCCTGCAGATGCAACGACTGTCGCC-ACCAGCCCG-ACAGACCGGGCT 456 * ********* *************** ********* ********* ************ consensus_4531#0 ACTACGGTCCAGC-AAAGCCCCCGCCAACGGTTGTGACCACGACG-ACGGGGAAACCGAC 506 consensus_4531#1 ACTACGGTCCAGCGAAAGCCCCCGGCAACGGTTGTGACCACGACGGACGGGGAAACGAAC 516 ************* ********** ******************** ********** ** consensus_4531#0 CACCA-CTTCGAGCACCACGA--CTACTGAGATGCCCAAAGT-GAACGAAAGTCCCACCA 562 consensus_4531#1 AGCGAATTTCGAGCACCACGATACTGTCGATTGGCCAAAAGTTGAACGAAAAGTCCCACA 576 * * ************** ** ** *** ***** ******** ** ** consensus_4531#0 CCGAGACGCTGCTGTGGA-GTGATAAACCG--TTTGCCG-AGTGGTTCTTGCAAA-GCAA 617 consensus_4531#1 C-GAGACGNTGTGTTGGAAGTGATAAAGCGGNTTTGNCGGAGTGGTTCTTGCAAAAGTAA 635 * ****** ** **** ******** ** **** ** *************** * ** consensus_4531#0 GCGCAAGAAGGGTCAGCCGATCTCTTCCCT-GAACGTGCAGCTGTTAGATCCGCTGNCAC 676 consensus_4531#1 GCGCAAGAAGGTTCAGCCGAATTCTTNCCTTAAAGGTGCAG-TGTTAG------------ 682 *********** ******** **** *** ** ****** ****** consensus_4531#0 TGCGGGTACTGCAGGACTTTAACCGCGAACCGTA 710 consensus_4531#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||