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Anopheles gambiae
cluster # 4531 cluster # 4531       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4531#0 length = 710 sequences # 2  
consensus_4531#1 length = 682 sequences # 1  

consensusID : consensus_4531#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 710
fasta sequence
                              [AGCAGATCGGCACGAGGTGAACGCGGCCGTACAATGAAGTTGCGTTCTGTCCTGTGCTATTGGTGCGCTCCTGTGCGCTTCGTTAGGAACGATTTACGCATCGGATGCAACCATATCAGGAGATGACGATGAAAGGTCCAGGAGACAGAGGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATCGAGATGATTCAGTACGAGGCCAACGATGTACACCGCCAAATGCTGAAGCTGAAAGTAAAGACCTTCCACGAACCAGCACTACTACTACTAGAACGGGCCACGAAGAAACGGANAACGGACTGCGTGCTGGAAGTACGTCGTCGTANCGTCAANCAGCAAGCCACCACAGGACAGCCCGTTAAGTACCGCTAAGCCTGCAGATGCAACACTGTCGCCCACCAGCCCGCACAGACCGGGCTACTACGGTCCAGCAAAGCCCCCGCCAACGGTTGTGACCACGACGACGGGGAAACCGACCACCACTTCGAGCACCACGACTACTGAGATGCCCAAAGTGAACGAAAGTCCCACCACCGAGACGCTGCTGTGGAGTGATAAACCGTTTGCCGAGTGGTTCTTGCAAAGCAAGCGCAAGAAGGGTCAGCCGATCTCTTCCCTGAACGTGCAGCTGTTAGATCCGCTGNCACTGCGGGTACTGCAGGACTTTAACCGCGAACCGTA]

[+] EMBL BX469383             [AGCAGATCGGCACGAGGTGAACGCGGCCGTACAATGAAGTTGCGTTCTGTCCTGTGCTATTGGTGCGCTCCTGTGCGCTTCGTTAGGAACGATTTACGCATCGGATGCAACCATATCAGGAGATGACGATGAAAGGTCCAGGAGACAGAGGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATCGAGATGATTCAGTACGAGGCCAACGATGTACACCGCCAAATGCTGAAGCTGAAAGTAAAGACCTTCCACGAACCAGCACTACTACTACTAGAACGGGCCACGAAGAAACGGANAACGGACTGCGTGCTGGAAGTACGTCGTCGTANCGTCAAN                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX620326             [                                                          ATTGGTGCGCTCCTGTGCGCTTCGTTAGGAACGATTTACGCATCGGATGCAACCATATCAGCAGATGACGATGAAAGGT CAGGAGACAGAGGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATCGAGATGATTCAGTACGA GCCAACGATG ACACCGCCAAATGCTGAAGCTGAAA TAAA ACCTTCCAC AACCACCACTACTACTACTA AACGGCCCAC AA CAAC GACAAC GACTGC TGCTGGAAGTACGTCGTC TA CCTCAACCAGCAAGCCACCACAGGACAGCCCGTTAAGTACCGCTAAGCCTGCAGATGCAACACTGTCGCCCACCAGCCCGCACAGACCGGGCTACTACGGTCCAGCAAAGCCCCCGCCAACGGTTGTGACCACGACGACGGGGAAACCGACCACCACTTCGAGCACCACGACTACTGAGATGCCCAAAGTGAACGAAAGTCCCACCACCGAGACGCTGCTGTGGAGTGATAAACCGTTTGCCGAGTGGTTCTTGCAAAGCAAGCGCAAGAAGGGTCAGCCGATCTCTTCCCTGAACGTGCAGCTGTTAGATCCGCTGNCACTGCGGGTACTGCAGGACTTTAACCGCGAACCGTA]


>consensus_4531#0 AGCAGATCGGCACGAGGTGAACGCGGCCGTACAATGAAGTTGCGTTCTGTCCTGTGCTAT TGGTGCGCTCCTGTGCGCTTCGTTAGGAACGATTTACGCATCGGATGCAACCATATCAGG AGATGACGATGAAAGGTCCAGGAGACAGAGGACCACTGCTGGTAGATAACTATATTCCCG TGACGATGCAAATACTGCAACACTGTATCGAGATGATTCAGTACGAGGCCAACGATGTAC ACCGCCAAATGCTGAAGCTGAAAGTAAAGACCTTCCACGAACCAGCACTACTACTACTAG AACGGGCCACGAAGAAACGGANAACGGACTGCGTGCTGGAAGTACGTCGTCGTANCGTCA ANCAGCAAGCCACCACAGGACAGCCCGTTAAGTACCGCTAAGCCTGCAGATGCAACACTG TCGCCCACCAGCCCGCACAGACCGGGCTACTACGGTCCAGCAAAGCCCCCGCCAACGGTT GTGACCACGACGACGGGGAAACCGACCACCACTTCGAGCACCACGACTACTGAGATGCCC AAAGTGAACGAAAGTCCCACCACCGAGACGCTGCTGTGGAGTGATAAACCGTTTGCCGAG TGGTTCTTGCAAAGCAAGCGCAAGAAGGGTCAGCCGATCTCTTCCCTGAACGTGCAGCTG TTAGATCCGCTGNCACTGCGGGTACTGCAGGACTTTAACCGCGAACCGTA



consensusID : consensus_4531#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 682
fasta sequence
                              [GGCCAGAATCGGCACGTGGAGACGCCGTACGAATTGGTCGACTTGCGACGCGCGGCCGTACAATGAAGTTGGTTCTGTCCTGTGCTATTGGTGCGCTCCTGTGCGCTTCGTTAGGAACGATTTACGCATCGGATGCAACCATATCAGCAGATGACGATAAAGGTCAGGAGACAGAGGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATCGAGATGATTCAGTACGAGCCAACGATGACACCGCCAAATGCTGAAGCTGAAATAAAACCTTCCACAACCACCACTACTACTACTAAACGGCCACAACAACGACACGACTGCTGCTGGAAGTACGTCGTCTACCTCAACCAGCAAGCCACCACAGGACAGCCCGTTAGTACCGCTAGCCTGCAGATGCAACGACTGTCGCCACCAGCCCGACAGACCGGGCTACTACGGTCCAGCGAAAGCCCCCGGCAACGGTTGTGACCACGACGGACGGGGAAACGAACAGCGAATTTCGAGCACCACGATACTGTCGATTGGCCAAAAGTTGAACGAAAAGTCCCACACGAGACGNTGTGTTGGAAGTGATAAAGCGGNTTTGNCGGAGTGGTTCTTGCAAAAGTAAGCGCAAGAAGGTTCAGCCGAATTCTTNCCTTAAAGGTGCAGTGTTAG]

[+] EMBL BX469823             [GGCCAGAATCGGCACGTGGAGACGCCGTACGAATTGGTCGACTTGCGACGCGCGGCCGTACAATGAAGTTGGTTCTGTCCTGTGCTATTGGTGCGCTCCTGTGCGCTTCGTTAGGAACGATTTACGCATCGGATGCAACCATATCAGCAGATGACGATAAAGGTCAGGAGACAGAGGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATCGAGATGATTCAGTACGAGCCAACGATGACACCGCCAAATGCTGAAGCTGAAATAAAACCTTCCACAACCACCACTACTACTACTAAACGGCCACAACAACGACACGACTGCTGCTGGAAGTACGTCGTCTACCTCAACCAGCAAGCCACCACAGGACAGCCCGTTAGTACCGCTAGCCTGCAGATGCAACGACTGTCGCCACCAGCCCGACAGACCGGGCTACTACGGTCCAGCGAAAGCCCCCGGCAACGGTTGTGACCACGACGGACGGGGAAACGAACAGCGAATTTCGAGCACCACGATACTGTCGATTGGCCAAAAGTTGAACGAAAAGTCCCACACGAGACGNTGTGTTGGAAGTGATAAAGCGGNTTTGNCGGAGTGGTTCTTGCAAAAGTAAGCGCAAGAAGGTTCAGCCGAATTCTTNCCTTAAAGGTGCAGTGTTAG]


>consensus_4531#1 GGCCAGAATCGGCACGTGGAGACGCCGTACGAATTGGTCGACTTGCGACGCGCGGCCGTA CAATGAAGTTGGTTCTGTCCTGTGCTATTGGTGCGCTCCTGTGCGCTTCGTTAGGAACGA TTTACGCATCGGATGCAACCATATCAGCAGATGACGATAAAGGTCAGGAGACAGAGGACC ACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATCGAGAT GATTCAGTACGAGCCAACGATGACACCGCCAAATGCTGAAGCTGAAATAAAACCTTCCAC AACCACCACTACTACTACTAAACGGCCACAACAACGACACGACTGCTGCTGGAAGTACGT CGTCTACCTCAACCAGCAAGCCACCACAGGACAGCCCGTTAGTACCGCTAGCCTGCAGAT GCAACGACTGTCGCCACCAGCCCGACAGACCGGGCTACTACGGTCCAGCGAAAGCCCCCG GCAACGGTTGTGACCACGACGGACGGGGAAACGAACAGCGAATTTCGAGCACCACGATAC TGTCGATTGGCCAAAAGTTGAACGAAAAGTCCCACACGAGACGNTGTGTTGGAAGTGATA AAGCGGNTTTGNCGGAGTGGTTCTTGCAAAAGTAAGCGCAAGAAGGTTCAGCCGAATTCT TNCCTTAAAGGTGCAGTGTTAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4531#0      -------------------------------AGCAGATCGGCACGAGGTGAACGCGGCCG 29
consensus_4531#1      GGCCAGAATCGGCACGTGGAGACGCCGTACGAATTGGTCGACTTGCGACG--CGCGGCCG 58
                                                     *   * *** *  * *  *  ********

consensus_4531#0      TACAATGAAGTTGCGTTCTGTCCTGTGCTATTGGTGCGCTCCTGTGCGCTTCGTTAGGAA 89
consensus_4531#1      TACAATGAAGTTG-GTTCTGTCCTGTGCTATTGGTGCGCTCCTGTGCGCTTCGTTAGGAA 117
                      ************* **********************************************

consensus_4531#0      CGATTTACGCATCGGATGCAACCATATCAGGAGATGACGATGAAAGGTCCAGGAGACAGA 149
consensus_4531#1      CGATTTACGCATCGGATGCAACCATATCAGCAGATGACGATAAAGG--TCAGGAGACAGA 175
                      ****************************** ********** ** *   ***********

consensus_4531#0      GGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATC 209
consensus_4531#1      GGACCACTGCTGGTAGATAACTATATTCCCGTGACGATGCAAATACTGCAACACTGTATC 235
                      ************************************************************

consensus_4531#0      GAGATGATTCAGTACGAGGCCAACGATGTACACCGCCAAATGCTGAAGCTGAAAGTAAAG 269
consensus_4531#1      GAGATGATTCAGTACGAG-CCAACGATG-ACACCGCCAAATGCTGAAGCTGAAAT--AAA 291
                      ****************** ********* *************************   ** 

consensus_4531#0      ACCTTCCACGAACCAGCACTACTACTACTAGAACGGGCCACGAAGAAACGGANAACGGAC 329
consensus_4531#1      ACCTTCCAC-AACCACCACTACTACTACTAAAC--GGCCAC-----AACAACGACACGAC 343
                      ********* ***** ************** *   ******     ***    *   ***

consensus_4531#0      TGCGTGCTGGAAGTACGTCGTCGTANCGTCAANCAGCAAGCCACCACAGGACAGCCCGTT 389
consensus_4531#1      TGC-TGCTGGAAGTACGTCGTC-TACC-TCAACCAGCAAGCCACCACAGGACAGCCCGTT 400
                      *** ****************** ** * **** ***************************

consensus_4531#0      AAGTACCGCTAAGCCTGCAGATGCAAC-ACTGTCGCCCACCAGCCCGCACAGACCGGGCT 448
consensus_4531#1      A-GTACCGCTA-GCCTGCAGATGCAACGACTGTCGCC-ACCAGCCCG-ACAGACCGGGCT 456
                      * ********* *************** ********* ********* ************

consensus_4531#0      ACTACGGTCCAGC-AAAGCCCCCGCCAACGGTTGTGACCACGACG-ACGGGGAAACCGAC 506
consensus_4531#1      ACTACGGTCCAGCGAAAGCCCCCGGCAACGGTTGTGACCACGACGGACGGGGAAACGAAC 516
                      ************* ********** ******************** **********  **

consensus_4531#0      CACCA-CTTCGAGCACCACGA--CTACTGAGATGCCCAAAGT-GAACGAAAGTCCCACCA 562
consensus_4531#1      AGCGAATTTCGAGCACCACGATACTGTCGATTGGCCAAAAGTTGAACGAAAAGTCCCACA 576
                        * *  **************  **   **   *** ***** ********   **  **

consensus_4531#0      CCGAGACGCTGCTGTGGA-GTGATAAACCG--TTTGCCG-AGTGGTTCTTGCAAA-GCAA 617
consensus_4531#1      C-GAGACGNTGTGTTGGAAGTGATAAAGCGGNTTTGNCGGAGTGGTTCTTGCAAAAGTAA 635
                      * ****** **   **** ******** **  **** ** *************** * **

consensus_4531#0      GCGCAAGAAGGGTCAGCCGATCTCTTCCCT-GAACGTGCAGCTGTTAGATCCGCTGNCAC 676
consensus_4531#1      GCGCAAGAAGGTTCAGCCGAATTCTTNCCTTAAAGGTGCAG-TGTTAG------------ 682
                      *********** ********  **** ***  ** ****** ******            

consensus_4531#0      TGCGGGTACTGCAGGACTTTAACCGCGAACCGTA 710
consensus_4531#1      ----------------------------------
                                                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)