These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4556#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 680 fasta sequence [CCGATCATGGCCGGTCTTGTGTTATTGTCGCTGCTGCTGATTTCCGTTCTGCTAACGCCACAGCAAATATCGGCCCAACAGTGTGGCCAGGTGCAGGTGCTGAAGCAAGGGCTCATCTTTGGCGGTACAGCGTCCACGCCCGGCATGTGGCCGTGGCACGTGGCAGTGTTTCACCGTGAGTCGATCCGCCGCACCTCGTACAAGTGTGGCGGCACCATCATCAACCGGGACACCGTTCTGACGGCGTATCACTGTGTGGTGGAAAACCAACGACCGATTGCGGCGGGCCGGCTGGTGGCGCGGGCCGGCCTGTTTGATCTCGACGTCGGTGGCCCTACCGTGCAGGAAAACCGTGTGTTTGACGTCATCTCGCCGCCCGGGGCAAGTGCGCGCACGTTCGACGACGACATTGCCATACTGAAGATGCAAACCCAGTTCACGTACGACGACTACGTGCAGCCCGTCTGCATCCGCTCGGTGCCGCAGGACATCGGGCAGCTGGTCGGTGCGTACGGGACGGTCGTGGGCTGGGGCTGGACCGAACAGAGCACAACGTCGGCTGAGCTGCGGCAGGCGAACGTACCGGTCGTGAGTGCGGAAGATTGTCTCGCCAGCGATCGGAACCTCTTCAGCCAGGTGCTGACGACGAAGGTGTACTGTGCCGGCAGCCGCAACGGTAC] [+] EMBL BM629243 [CCGATCATGGCCGGTCTTGTGTTATTGTCGCTGCTGCTGATTTCCGTTCTGCTAACGCCACAGCAAATATCGGCCCAACAGTGTGGCCAGGTGCAGGTGCTGAAGCAAGGGCTCATCTTTGGCGGTACAGCGTCCACGCCCGGCATGTGGCCGTGGCACGTGGCAGTGTTTCACCGTGAGTCGATCCGCCGCACCTCGTACAAGTGTGGCGGCACCATCATCAACCGGGACACCGTTCTGACGGCGTATCACTGTGTGGTGGAAAACCAACGACCGATTGCGGCGGGCCGGCTGGTGGCGCGGGCCGGCCTGTTTGATCTCGACGTCGGTGGCCCTACCGTGCAGGAAAACCGTGTGTTTGACGTCATCTCGCCGCCCGGGGCAAGTGCGCGCACGTTCGACGACGACATTGCCATACTGAAGATGCAAACCCAGTTCACGTACGACGACTACGTGCAGCCCGTCTGCATCCGCTCGGTGCCGCAGGACATCGGGCAGCTGGTCGGTGCGTACGGGACGGTCGTGGGCTGGGGCTGGACCGAACAGAGCACAACGTCGGCTGAGCTGCGGCAGGCGAACGTACCGGTCGTGAGTGCGGAAGATTGTCTCGCCAGCGATCGGAACCTCTTCAGCCAGGTGCTGACGACGAAGGTGTACTGTGCCGGCAGCCGCAACGGTAC] [+] EMBL BM598852 [ ccgCCCTTCTGCTAACGCCACAGCAAATATCGGCCCAACAGTGTGGCCAGGTGCAGGTGCTGAAGCAGGGGCTCATCTTTGGCGGTACAGCGTCCACGCCCGGTATGTGGCCGTGGCACGTGGCAGTGTTTCACCGTGAGTCGATCCGCCGCACCTCGTACAAGTGTGGCGGCACCATCATCAACCGGGACACCGTTCTGACGGCGTATCACTGTGTGGTGGAAAACCAACGACCGATCGCGGCGGGCCGGCTGGTGGCGCGGGCCGGCCTGTTTGATCTCGACGTCGGTGGCCCGACCGTGCAGGAAAACCGTGTGTTTGACGTCATCTCGCCGCCCGGGGCAAGTGCGCGCACGTTCGACGACGACATTGCCATACTGAAGATGCAAACACAGTTCACGTACGACGACTACGTGCAGCCCGTCTGCATCCGCTCGGTGCGGCAGGACATTGGGCAGCTGGTCGGTGCGTACGGGACGGTCGTGGGCTGGGGCTGGACCGAACACAGCACAACGTCGGCTGAGCTGCGGCAGGCGAACGTACCGGTCGTGAGTGCGGAAGATTGTCTCGCCAGCGATCGGAACCTCTTCAGCCAGGTGCTGACGACGAAGGTGTACTGTGCC ] consensusID : consensus_4556#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [CCGCCCACGCGTCCGGCAGGGGCTCATCTTTGGCGGTACAGCATCCACGCCCGGCATGTGGCCGTGGCACGTGGCAGTGTTTCACCGTGAGTCGATCCGCCGCACCTCGTACAAGTGTGGCGGCACCATCATCAACCGGGACACCGTTCTGACGGCGTATCACTGTGTGGTGGAAAACCAACGACCGATTGCGGCGGGCCGGCTGGTGGCGCGGGCCGGCCTGTTTGATCTCGACGTCGGTGGCCCGACCGTGCAGGAAAACCGTGTGTTTGACGTCATCTCGCCGCCCGGGGCAAGTGCGCGCACGTTCGACGACGACATTGCCATACTGAAGATGCAAACCCAGTTCACGTACGACGACTACGTGCAGCCCGTCTGCATTCGCTCGGTGCGGCAGGACATTGGGCAGCTGGTCGGTGCGTACGGGACGGTCGTGGGCTGGGGCTGGACCGAACAGAGCACAACGTCGGCTGAGCTGCGGCAGGCAAACGTACCGGTCGTGAGTGCGGAAGATTGTCTCGCCAGCGATCGGAACCTCTTCAGCCAGGTGCTGACGACGAAGGTGTACTGTGCCGGCAGCCGCAACGGTA] [+] EMBL BM579540 [CCGCCCACGCGTCCGGCAGGGGCTCATCTTTGGCGGTACAGCATCCACGCCCGGCATGTGGCCGTGGCACGTGGCAGTGTTTCACCGTGAGTCGATCCGCCGCACCTCGTACAAGTGTGGCGGCACCATCATCAACCGGGACACCGTTCTGACGGCGTATCACTGTGTGGTGGAAAACCAACGACCGATTGCGGCGGGCCGGCTGGTGGCGCGGGCCGGCCTGTTTGATCTCGACGTCGGTGGCCCGACCGTGCAGGAAAACCGTGTGTTTGACGTCATCTCGCCGCCCGGGGCAAGTGCGCGCACGTTCGACGACGACATTGCCATACTGAAGATGCAAACCCAGTTCACGTACGACGACTACGTGCAGCCCGTCTGCATTCGCTCGGTGCGGCAGGACATTGGGCAGCTGGTCGGTGCGTACGGGACGGTCGTGGGCTGGGGCTGGACCGAACAGAGCACAACGTCGGCTGAGCTGCGGCAGGCAAACGTACCGGTCGTGAGTGCGGAAGATTGTCTCGCCAGCGATCGGAACCTCTTCAGCCAGGTGCTGACGACGAAGGTGTACTGTGCCGGCAGCCGCAACGGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4556#0 CCGATCATGGCCGGTCTTGTGTTATTGTCGCTGCTGCTGATTTCCGTTCTGCTAACGCCA 60 consensus_4556#1 ------------------------------------------------------------ consensus_4556#0 CAGCAAATATCGGCCCAACAGTGTGGCCAGGTGCAGGTGCTGAAGCAAGGGCTCATCTTT 120 consensus_4556#1 --------------------------CCGCCCACGCGTCC---GGCAGGGGCTCATCTTT 31 ** * ** * *** ************ consensus_4556#0 GGCGGTACAGCGTCCACGCCCGGCATGTGGCCGTGGCACGTGGCAGTGTTTCACCGTGAG 180 consensus_4556#1 GGCGGTACAGCATCCACGCCCGGCATGTGGCCGTGGCACGTGGCAGTGTTTCACCGTGAG 91 *********** ************************************************ consensus_4556#0 TCGATCCGCCGCACCTCGTACAAGTGTGGCGGCACCATCATCAACCGGGACACCGTTCTG 240 consensus_4556#1 TCGATCCGCCGCACCTCGTACAAGTGTGGCGGCACCATCATCAACCGGGACACCGTTCTG 151 ************************************************************ consensus_4556#0 ACGGCGTATCACTGTGTGGTGGAAAACCAACGACCGATTGCGGCGGGCCGGCTGGTGGCG 300 consensus_4556#1 ACGGCGTATCACTGTGTGGTGGAAAACCAACGACCGATTGCGGCGGGCCGGCTGGTGGCG 211 ************************************************************ consensus_4556#0 CGGGCCGGCCTGTTTGATCTCGACGTCGGTGGCCCTACCGTGCAGGAAAACCGTGTGTTT 360 consensus_4556#1 CGGGCCGGCCTGTTTGATCTCGACGTCGGTGGCCCGACCGTGCAGGAAAACCGTGTGTTT 271 *********************************** ************************ consensus_4556#0 GACGTCATCTCGCCGCCCGGGGCAAGTGCGCGCACGTTCGACGACGACATTGCCATACTG 420 consensus_4556#1 GACGTCATCTCGCCGCCCGGGGCAAGTGCGCGCACGTTCGACGACGACATTGCCATACTG 331 ************************************************************ consensus_4556#0 AAGATGCAAACCCAGTTCACGTACGACGACTACGTGCAGCCCGTCTGCATCCGCTCGGTG 480 consensus_4556#1 AAGATGCAAACCCAGTTCACGTACGACGACTACGTGCAGCCCGTCTGCATTCGCTCGGTG 391 ************************************************** ********* consensus_4556#0 CCGCAGGACATCGGGCAGCTGGTCGGTGCGTACGGGACGGTCGTGGGCTGGGGCTGGACC 540 consensus_4556#1 CGGCAGGACATTGGGCAGCTGGTCGGTGCGTACGGGACGGTCGTGGGCTGGGGCTGGACC 451 * ********* ************************************************ consensus_4556#0 GAACAGAGCACAACGTCGGCTGAGCTGCGGCAGGCGAACGTACCGGTCGTGAGTGCGGAA 600 consensus_4556#1 GAACAGAGCACAACGTCGGCTGAGCTGCGGCAGGCAAACGTACCGGTCGTGAGTGCGGAA 511 *********************************** ************************ consensus_4556#0 GATTGTCTCGCCAGCGATCGGAACCTCTTCAGCCAGGTGCTGACGACGAAGGTGTACTGT 660 consensus_4556#1 GATTGTCTCGCCAGCGATCGGAACCTCTTCAGCCAGGTGCTGACGACGAAGGTGTACTGT 571 ************************************************************ consensus_4556#0 GCCGGCAGCCGCAACGGTAC 680 consensus_4556#1 GCCGGCAGCCGCAACGGTA- 590 ******************* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||