These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1020 fasta sequence [CCGGAGGAAATGAAATGAAATTATTTTACAGAGGAAAAAAAACAACACACAAAATAGGGTGAGATTCGAACGGCGAGAACGAAAACACATGAATCAAAGATTACTTTATTAACGTAAAACAGAAACAAAAAAACAAAAAACACACACTTTAAACATACACCACGAAACACACAACATAATAGGATAAAAAGTATAACAAATGAAAGGAAAAAAAAAAAACATAAAATATGAAGCAACAAAAAAACCTGATTGTGTGCTAGGAATAAAACAAAATAATACGATGAATGTCAGGCGAAGAAAGTATGAAACGCGCGGCGAAGACAAGAAGTTTATGTGTGTAGGAGAAAGTGACAATGAGAAAATGTGCTGTTTAGAGGTGCGCTTGGTTTATGCTAAACATGGGATAGGAGAGGCATGG-----GGGGGTTGTGGATAGGAAAATTCAAAACGAAAT-----AAAAAACGAACTATATCTATGAAGCAGCGGCAGAAAGGATTAAAGCAACAAAAAAAAAAAGAAAATCCCAAACAC-GTAAGACGGAAGTAGATAGGGTGAGAAATAATAAGAATGGGTGCCGCCGATGCAACAACCCAGTGGGTCGGGAGGATTAAAAGAAAGACAGAAAGATTTGCGATGCGAAATAAAATGGATGGACCCAACGGATGGAGGATTGGACTGTCCGAGCGGCCTAGCGCTGGCCGAAGACTATAGGAAAGTGAATAAAATAAATGCTAAAAATATATATGTATATGAATATAAAATGAATAGAGAGCGGGAAAACAAAAAGGGGAAATAGGCAAACAAAAAATAACATATAAAATATAATGGTTTGCTTTCGATTCNCTCCCAGATAGGTTTATGACTTTCTTGTATTTTTNTTTTGTGNGTATTATTTCTTACAAAATACACTCAAACNCCACGTATACGGAAGCAAATCAATAAAACTAGAACTTAATTTGCTTAAAAAACTATAATTTCCAAAGCATTACAACTCCACACATTGTTGTTTTCAAAAGTCACAGTTG] [+] EMBL BM641500 [CCGGAGGAAATGAAATGAAATTATTTTACAGAGGAAAAAAAACAACACACAAAATAGGGTGAGATTCGAACGGCGAGAACGAAAACACATGAATCAAAGATTACTTTATTAACGTAAAACAGAAACAAAAAAACAAAAAACACACACTTTAAACATACACCACGAAACACACAACATAATAGGATAAAAAGTATAACAAATGAAAGGAAAAAAAAAAAACATAAAATATGAAGCAACAAAAAAACCTGATTGTGTGCTAGGAATAAAACAAAATAATACGATGAATGTCAGGCGAAGAAAGTATGAAACGCGCGGCGAAGACAAGAAGTTTATGTGTGTAGGAGAAAGTGACAATGAGAAAATGTGCTGTTTAGAGGTGCGCTTGGTTTATGCTAAACATGGGATAGGAGAGGCATGG GGGGGTTGTGGATAGGAAAATTCAAAACGAAAT AAAAAACGAACTATATCTATGAAGCAGCGGCAGAAAGGATTAAAGCAACAAAAAAAAAAAGAAAATCCCAAACAC GTAAGACGGAAGTAGATAGGGTGAGAAATAATAAGAATGGGTGCCGCCGATGCAACAACCCAGTGGGTCGGGAGGATTAAAAGAAAGACAGAAAGATTTGCGATGCGAAATAAAATGGATGGACCCAACGGATGGAGGATTGGACTGTCCGAGCGGCCTAGCG ] [+] EMBL BX623886 [ ACATGGGATGGGAGAGGCATGGGGGAAGGGGGTTGTGGATAGGAAAATTCAAAACGAAATAAAAAAAAAAACGAACTATATCTATGAAGCAGCGGCAGAAAGGATTAAAGCAAC AAAAAAAAAAGAAAATCCCAAACACGGNAAGACGGAAGTAGATAGGGTGAGAAATAATAAGAATCGGTGCCGCCGATGCAACAACCCAGTGGGTCGGGAGGATTAAAAGAAAGACAGAAAGATTTGCGAGGCGAAATAAAAT GCT ACTCAACGGATGGAGGATTGGACTGTCCGAGCGGCCTAGCGCTGGCCGAAGACTATAGGAAAGTGAATAAAATAAATGCTAAAAATATATATGTATATGAATATAAAATGAATAGAGAGCGGGAAAACAAAAAGGGGAAATAGGCAAACAAAAAATAACATATAAAATATAATGGTTTGCTTTCGATTCNCTCCCAGATAGGTTTATGACTTTCTTGTATTTTTNTTTTGTGNGTATTATTTCTTACAAAATACACTCAAACNCCACGTATACGGAAGCAAATCAATAAAACTAGAACTTAATTTGCTTAAAAAACTATAATTTCCAAAGCATTACAACTCCACACATTGTTGTTTTCAAAAGTCACAGTTG] consensusID : consensus_4557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [AGATCNCCACGAGGGTTAGGATAGGAAAATCAAAACGAANATAAAAAAAAAAAACGAACTATATCTATGAAGCAGCGGCAGAAAGGATTAAAGCAACAAAAAAAAAGAAAATCCCAAACACGGAAGACGGAAGTAGATAGGGTGAGAAATAATAAGAATCGGTGCCGCCGATGCAACAACCCAGTGGGTCGGGAGGATTAAAAGAAAGACAGAAAGATTTGCGAGGCGAAATAAAATGCTACTCAACGGATGGAGGATTGGACTGTCCGAGCGGCCTAGCGCTGGCCGAAGACTATAGGAACAGTGAATAAAATAAATGCTAAAAATATATATCGTATATGAATATACAAATGAATAGAGAGCGGGAAAACAAAAAGGGGAAATAGGCAAAGGAAGAAATAACATATAANAGTATAATGGTTTGCTTTCGATTCACTCCCAGATAGGTTTATGACTTTCTTGTATTCTCACATTCATCGTGTGTATAATTTCTTACAAAATACACTCAAACACACGTTATACGGAACAAATCAATAAAACTAGAACTTAACTTTGCTTAAAAACTACTAATTTCCAAAACATTACAATCCACACATTGTNGATTTCA] [+] EMBL BX466624 [AGATCNCCACGAGGGTTAGGATAGGAAAATCAAAACGAANATAAAAAAAAAAAACGAACTATATCTATGAAGCAGCGGCAGAAAGGATTAAAGCAACAAAAAAAAAGAAAATCCCAAACACGGAAGACGGAAGTAGATAGGGTGAGAAATAATAAGAATCGGTGCCGCCGATGCAACAACCCAGTGGGTCGGGAGGATTAAAAGAAAGACAGAAAGATTTGCGAGGCGAAATAAAATGCTACTCAACGGATGGAGGATTGGACTGTCCGAGCGGCCTAGCGCTGGCCGAAGACTATAGGAACAGTGAATAAAATAAATGCTAAAAATATATATCGTATATGAATATACAAATGAATAGAGAGCGGGAAAACAAAAAGGGGAAATAGGCAAAGGAAGAAATAACATATAANAGTATAATGGTTTGCTTTCGATTCACTCCCAGATAGGTTTATGACTTTCTTGTATTCTCACATTCATCGTGTGTATAATTTCTTACAAAATACACTCAAACACACGTTATACGGAACAAATCAATAAAACTAGAACTTAACTTTGCTTAAAAACTACTAATTTCCAAAACATTACAATCCACACATTGTNGATTTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4557#0 CCGGAGGAAATGAAATGAAATTATTTTACAGAGGAAAAAAAACAACACACAAAATAGGGT 60 consensus_4557#1 ------------------------------------------------------------ consensus_4557#0 GAGATTCGAACGGCGAGAACGAAAACACATGAATCAAAGATTACTTTATTAACGTAAAAC 120 consensus_4557#1 ------------------------------------------------------------ consensus_4557#0 AGAAACAAAAAAACAAAAAACACACACTTTAAACATACACCACGAAACACACAACATAAT 180 consensus_4557#1 ------------------------------------------------------------ consensus_4557#0 AGGATAAAAAGTATAACAAATGAAAGGAAAAAAAAAAAACATAAAATATGAAGCAACAAA 240 consensus_4557#1 ------------------------------------------------------------ consensus_4557#0 AAAACCTGATTGTGTGCTAGGAATAAAACAAAATAATACGATGAATGTCAGGCGAAGAAA 300 consensus_4557#1 ------------------------------------------------------------ consensus_4557#0 GTATGAAACGCGCGGCGAAGACAAGAAGTTTATGTGTGTAGGAGAAAGTGACAATGAGAA 360 consensus_4557#1 ------------------------------------------------------------ consensus_4557#0 AATGTGCTGTTTAGAGGTGCGCTTGGTTTATGCTAAACATGGGATAGGAGAGGCATGGGG 420 consensus_4557#1 ------------------------------------------------AGATCNCCACGA 12 *** * consensus_4557#0 GGGTTGTGGATAGGAAAATTCAAAACGAAATAAAAAA------CGAACTATATCTATGAA 474 consensus_4557#1 GGGTTA-GGATAGGAAAATCAAAACGAANATAAAAAAAAAAAACGAACTATATCTATGAA 71 ***** ************ *** * ******** ***************** consensus_4557#0 GCAGCGGCAGAAAGGATTAAAGCAACAAAAAAAAAAAGAAAATCCCAAACACGTAAGACG 534 consensus_4557#1 GCAGCGGCAGAAAGGATTAAAGCAACAAAAAAAA--AGAAAATCCCAAACACGGAAGACG 129 ********************************** ***************** ****** consensus_4557#0 GAAGTAGATAGGGTGAGAAATAATAAGAATGGGTGCCGCCGATGCAACAACCCAGTGGGT 594 consensus_4557#1 GAAGTAGATAGGGTGAGAAATAATAAGAATCGGTGCCGCCGATGCAACAACCCAGTGGGT 189 ****************************** ***************************** consensus_4557#0 CGGGAGGATTAAAAGAAAGACAGAAAGATTTGCGATGCGAAATAAAATGGATGGACCCAA 654 consensus_4557#1 CGGGAGGATTAAAAGAAAGACAGAAAGATTTGCGAGGCGAAATAAAATGCT---ACTCAA 246 *********************************** ************* ** *** consensus_4557#0 CGGATGGAGGATTGGACTGTCCGAGCGGCCTAGCGCTGGCCGAAGACTATAGGAA-AGTG 713 consensus_4557#1 CGGATGGAGGATTGGACTGTCCGAGCGGCCTAGCGCTGGCCGAAGACTATAGGAACAGTG 306 ******************************************************* **** consensus_4557#0 AATAAAATAAATGCTAAAAATATATAT-GTATATGAATATA-AAATGAATAGAGAGCGGG 771 consensus_4557#1 AATAAAATAAATGCTAAAAATATATATCGTATATGAATATACAAATGAATAGAGAGCGGG 366 *************************** ************* ****************** consensus_4557#0 AAAACAAAAAGGGGAAATAGGCAAACAAA-AAATAACATATAAAA-TATAATGGTTTGCT 829 consensus_4557#1 AAAACAAAAAGGGGAAATAGGCAAAGGAAGAAATAACATATAANAGTATAATGGTTTGCT 426 ************************* ** ************* * ************** consensus_4557#0 TTCGATTCNCTCCCAGATAGGTTTATGACTTTCTTGTATTTTTNTTTT----GTGNGTAT 885 consensus_4557#1 TTCGATTCACTCCCAGATAGGTTTATGACTTTCTTGTATTCTCACATTCATCGTGTGTAT 486 ******** ******************************* * ** *** **** consensus_4557#0 TATTTCTTACAAAATACACTCAAACNCCACGTATACGGAAGCAAATCAATAAAACTAGAA 945 consensus_4557#1 AATTTCTTACAAAATACACTCAAACACACGTTATACGGAA-CAAATCAATAAAACTAGAA 545 ************************ * ********* ******************* consensus_4557#0 CTTAA-TTTGCTTAAAAAACTATAATTTCCAAAGCATTACAACTCCACACATTGTTGTTT 1004 consensus_4557#1 CTTAACTTTGCTTAAAAACTACTAATTTCCAAAACATTACAA-TCCACACATTGTNGATT 604 ***** ************ *********** ******** ************ * ** consensus_4557#0 TCAAAAGTCACAGTTG 1020 consensus_4557#1 TCA------------- 607 *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||