These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4573#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 650 fasta sequence [CCGAACACACACAGCTCACCCCGGAACGAAAATCCCAAGTGCAGTGATGTGATTTGATGGGAAGCTCGGTAAAAAGAAAGCAAAACTGCCGCAACGAAACGACCGACATTGCAGCCAGGACCGACCGAGTGGTTTGCGTTTAGTTTTTTGCGTTAATGGGACTCGCCGTTTGTTGTGAAATGTGATAAGTGCTGGATGGTTGGTTAATGTGCGTTCAAGGAACACGAGCCCCTTGTTACAAATGCGAAACACACAGAATAAAGGCAGTGCTTAAAATGCCCTCTGATTGCAGCTGCCGCACGACCTTCGTCTGTTTGCGTTGAAGTTACAGCACTGAAAAAAGAAACTATGCGTTCTGTTTTCGGCCATGCCAGAAGGTTACGACGGCAGCAACACATAGGCGAGACGGGCGACGCGCAGGAAGGGTAGAGAGATGCATCATCAGATTTGCAACAAGGGACGGTCATCAAACGGGAAACCAACGAAAAAGCAGTGTATCCCTTTAATGCATCGGTGANTATGATGCATTTGANATGGTTGCTAGTGTAGANGAACTGCACATTACACAGAGCAGAGAAAANCAACCAACAAAGCTATACACAAAAGAACGATNGAAAAGTGCGTGGCTCTTCGTNATCTCAATTATGCGA] [+] EMBL BM639721 [CCGAACACACACAGCTCACCCCGGAACGAAAATCCCAAGTGCAGTGATGTGATTTGATGGGAAGCTCGGTAAAAAGAAAGCAAAACTGCCGCAACGAAACGACCGACATTGCAGCCAGGACCGACCGAGTGGTTTGCGTTTAGTTTTTTGCGTTAATGGGACTCGCCGTTTGTTGTGAAATGTGATAAGTGCTGGATGGTTGGTTAATGTGCGTTCAAGGAACACGAGCCCCTTGTTACAAATGCGAAACACACAGAATAAAGGCAGTGCTTAAAATGCCCTCTGATTGCAGCTGCCGCACGACCTTCGTCTGTTTGCGTTGAAGTTACAGCACTGAAAAAAGAAACTATGCGTTCTGTTTTCGGCCATGCCAGAAGGTTACGACGG ] [+] EMBL BX619353 [ TGCGTTTAGTTTTTTGCGTTAATGGGACTCGCCGTTTGTTGTGAAATGTGATAAGTGCTGGATGGTTGGTTAATGTGCGTTCAAGGAACACGAGCCCCTTGTTACAAATGCGAAACACACAGAATAAAGGCAGTGCTTAAAATGCCCTCTGATTGCAGCTGCCGCACGACCTTCGTCTGTTTGCGTTGAAGTTACAGCACTGAAAAAAGAAACTATGCGTTCTGTTTTCGGCCATGCCAGAAGGTTACGACGGCAGCAACACATAGGCGAGACGGGCGACGCGCAGGAAGGGTAGAGAGATGCATCATCAGATTTGCAACAAGGGACGGTCATCAAACGGGAAACCAACGAAAAAGCAGTGTATCCCTTTAATGCATCGGTGANTATGATGCATTTGANATGGTTGCTAGTGTAGANGAACTGCACATTACACAGAGCAGAGAAAANCAACCAACAAAGCTATACACAAAAGAACGATNGAAAAGTGCGTGGCTCTTCGTNATCTCAATTATGCGA] consensusID : consensus_4573#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [GAATCGCCNCGAGGCCCAAGTGCAGTGATGTGATTTGATGGGAAGCTCGGTAAAAAGAAAGCAAAACTGCCGCAACGAAACGACCGACATTGCAGCCAGGACCGACCGAGTGGTTTGCGTTTAGTTTTTTGCGTTAATGGGACTCGCCGTTTGTTGTGAAATGTGATAAGTGCTGGATGGTTGGTTAATGTGCGTTCAAGGAACACGAGCCCCTTGTTACAAATGCGAAACACACAGAATAAAGGCAGTGCTTAAAATGCCCTCTGATTGCAGCTGCCGCACGACCTTCGTCTGTTTGCGTTGAAGTTACAGCACTGAAAAAAGAAACTATGCGTTCTGTTTTCGGCCATGCCAGAAGGTTACGACGGCAGCAGCACATAGGCGAGACGGGCGACGCGCAGGAAGGGTAGAGAGATGCATCATCAGATTTGCAACAAGGGACGGTC] [+] EMBL AL932391 [GAATCGCCNCGAGGCCCAAGTGCAGTGATGTGATTTGATGGGAAGCTCGGTAAAAAGAAAGCAAAACTGCCGCAACGAAACGACCGACATTGCAGCCAGGACCGACCGAGTGGTTTGCGTTTAGTTTTTTGCGTTAATGGGACTCGCCGTTTGTTGTGAAATGTGATAAGTGCTGGATGGTTGGTTAATGTGCGTTCAAGGAACACGAGCCCCTTGTTACAAATGCGAAACACACAGAATAAAGGCAGTGCTTAAAATGCCCTCTGATTGCAGCTGCCGCACGACCTTCGTCTGTTTGCGTTGAAGTTACAGCACTGAAAAAAGAAACTATGCGTTCTGTTTTCGGCCATGCCAGAAGGTTACGACGGCAGCAGCACATAGGCGAGACGGGCGACGCGCAGGAAGGGTAGAGAGATGCATCATCAGATTTGCAACAAGGGACGGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4573#0 CCGAACACACACAGCTCACCCCGGAACGAAAATCCCAAGTGCAGTGATGTGATTTGATGG 60 consensus_4573#1 ------------GAATCGCCNCG-------AGGCCCAAGTGCAGTGATGTGATTTGATGG 41 ** ** ** * *************************** consensus_4573#0 GAAGCTCGGTAAAAAGAAAGCAAAACTGCCGCAACGAAACGACCGACATTGCAGCCAGGA 120 consensus_4573#1 GAAGCTCGGTAAAAAGAAAGCAAAACTGCCGCAACGAAACGACCGACATTGCAGCCAGGA 101 ************************************************************ consensus_4573#0 CCGACCGAGTGGTTTGCGTTTAGTTTTTTGCGTTAATGGGACTCGCCGTTTGTTGTGAAA 180 consensus_4573#1 CCGACCGAGTGGTTTGCGTTTAGTTTTTTGCGTTAATGGGACTCGCCGTTTGTTGTGAAA 161 ************************************************************ consensus_4573#0 TGTGATAAGTGCTGGATGGTTGGTTAATGTGCGTTCAAGGAACACGAGCCCCTTGTTACA 240 consensus_4573#1 TGTGATAAGTGCTGGATGGTTGGTTAATGTGCGTTCAAGGAACACGAGCCCCTTGTTACA 221 ************************************************************ consensus_4573#0 AATGCGAAACACACAGAATAAAGGCAGTGCTTAAAATGCCCTCTGATTGCAGCTGCCGCA 300 consensus_4573#1 AATGCGAAACACACAGAATAAAGGCAGTGCTTAAAATGCCCTCTGATTGCAGCTGCCGCA 281 ************************************************************ consensus_4573#0 CGACCTTCGTCTGTTTGCGTTGAAGTTACAGCACTGAAAAAAGAAACTATGCGTTCTGTT 360 consensus_4573#1 CGACCTTCGTCTGTTTGCGTTGAAGTTACAGCACTGAAAAAAGAAACTATGCGTTCTGTT 341 ************************************************************ consensus_4573#0 TTCGGCCATGCCAGAAGGTTACGACGGCAGCAACACATAGGCGAGACGGGCGACGCGCAG 420 consensus_4573#1 TTCGGCCATGCCAGAAGGTTACGACGGCAGCAGCACATAGGCGAGACGGGCGACGCGCAG 401 ******************************** *************************** consensus_4573#0 GAAGGGTAGAGAGATGCATCATCAGATTTGCAACAAGGGACGGTCATCAAACGGGAAACC 480 consensus_4573#1 GAAGGGTAGAGAGATGCATCATCAGATTTGCAACAAGGGACGGTC--------------- 446 ********************************************* consensus_4573#0 AACGAAAAAGCAGTGTATCCCTTTAATGCATCGGTGANTATGATGCATTTGANATGGTTG 540 consensus_4573#1 ------------------------------------------------------------ consensus_4573#0 CTAGTGTAGANGAACTGCACATTACACAGAGCAGAGAAAANCAACCAACAAAGCTATACA 600 consensus_4573#1 ------------------------------------------------------------ consensus_4573#0 CAAAAGAACGATNGAAAAGTGCGTGGCTCTTCGTNATCTCAATTATGCGA 650 consensus_4573#1 -------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||