cluster # 4577

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Anopheles gambiae
cluster # 4577 cluster # 4577 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4577#0 length = 694 sequences # 1

consensus_4577#1 length = 644 sequences # 2

consensusID : consensus_4577#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [CCGACATTGCCAGCCGGCTGCAAGAGCTCGTGCACTTTTTAGTTATTTACTTTTATTGAAATTTCCCAATTAAAAACTTACACCTAGCCAACATGACCACCCTGAGGCCCTTCACCTGCAACGATATGTTCCGGTTCAACAAAGTGTGCGTGCAAAGAGCTTGGCGATGCAGCGCATTCTGGTACAGTGCGTTCGCTAACGACAAGAATGTTCCTTTTCTTCCCCGCCCCACAGGAACCTGGACCCACTGACCGAAACCTACTGTCTTTCGTTCTACATGCAGTACCTGGCACATTGGCCAGAGTACTTCCAGGTGGCCGAATCGCCGACCGGAGAAATCATGGGCTACATTATGGGCAAGGCGGAAGGTCAAGGCGAAAGCTGGCACGGCCACGTAACGGCTCTTACCGTGTCGCCCGACTACCGACGGCTCGGCCTAGCAGCTACGCTGATGAGCTTCCTGGAGGATGTGAGCGAAAAGAAACGGTGCTACTTTGTAGATCTGTTTGTTCGCGTGAGCAATAAAATTGCCATCGAAATGTACACCAAGCTAGGCTACATCGTGTACCGGACGGTGCTCGAGTATTACGTCGGCGATCCGGACGAGGATGCGTACGACATGCGGAAGGCCTGCTCGAGGGATGTTCACAAAAAGTCCGTTATACCGCTGGAGCACCCGGTACGGGCCCGAAGA]

[+] EMBL BM578558             [CCGACATTGCCAGCCGGCTGCAAGAGCTCGTGCACTTTTTAGTTATTTACTTTTATTGAAATTTCCCAATTAAAAACTTACACCTAGCCAACATGACCACCCTGAGGCCCTTCACCTGCAACGATATGTTCCGGTTCAACAAAGTGTGCGTGCAAAGAGCTTGGCGATGCAGCGCATTCTGGTACAGTGCGTTCGCTAACGACAAGAATGTTCCTTTTCTTCCCCGCCCCACAGGAACCTGGACCCACTGACCGAAACCTACTGTCTTTCGTTCTACATGCAGTACCTGGCACATTGGCCAGAGTACTTCCAGGTGGCCGAATCGCCGACCGGAGAAATCATGGGCTACATTATGGGCAAGGCGGAAGGTCAAGGCGAAAGCTGGCACGGCCACGTAACGGCTCTTACCGTGTCGCCCGACTACCGACGGCTCGGCCTAGCAGCTACGCTGATGAGCTTCCTGGAGGATGTGAGCGAAAAGAAACGGTGCTACTTTGTAGATCTGTTTGTTCGCGTGAGCAATAAAATTGCCATCGAAATGTACACCAAGCTAGGCTACATCGTGTACCGGACGGTGCTCGAGTATTACGTCGGCGATCCGGACGAGGATGCGTACGACATGCGGAAGGCCTGCTCGAGGGATGTTCACAAAAAGTCCGTTATACCGCTGGAGCACCCGGTACGGGCCCGAAGA]




>consensus_4577#0
CCGACATTGCCAGCCGGCTGCAAGAGCTCGTGCACTTTTTAGTTATTTACTTTTATTGAA
ATTTCCCAATTAAAAACTTACACCTAGCCAACATGACCACCCTGAGGCCCTTCACCTGCA
ACGATATGTTCCGGTTCAACAAAGTGTGCGTGCAAAGAGCTTGGCGATGCAGCGCATTCT
GGTACAGTGCGTTCGCTAACGACAAGAATGTTCCTTTTCTTCCCCGCCCCACAGGAACCT
GGACCCACTGACCGAAACCTACTGTCTTTCGTTCTACATGCAGTACCTGGCACATTGGCC
AGAGTACTTCCAGGTGGCCGAATCGCCGACCGGAGAAATCATGGGCTACATTATGGGCAA
GGCGGAAGGTCAAGGCGAAAGCTGGCACGGCCACGTAACGGCTCTTACCGTGTCGCCCGA
CTACCGACGGCTCGGCCTAGCAGCTACGCTGATGAGCTTCCTGGAGGATGTGAGCGAAAA
GAAACGGTGCTACTTTGTAGATCTGTTTGTTCGCGTGAGCAATAAAATTGCCATCGAAAT
GTACACCAAGCTAGGCTACATCGTGTACCGGACGGTGCTCGAGTATTACGTCGGCGATCC
GGACGAGGATGCGTACGACATGCGGAAGGCCTGCTCGAGGGATGTTCACAAAAAGTCCGT
TATACCGCTGGAGCACCCGGTACGGGCCCGAAGA

consensusID : consensus_4577#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 644
fasta sequence

                              [CCGGAAAAACATTGCCAGCCGGCTGCAAGAGCTCGTGCACTTTTTAGTTATTTACTTTTATTGAAATTTCCCAATTAAAAAACTTACACCTAGCCAACATGACCACCCTGAGGCCCTTCACCTGCAACGATATGTTCCGGTTCAACAAAGTGAACCTGGACCCACTGACCGAAACCTACTGTCTTTCGTTCTACATGCAGTACCTGGCACATTGGCCAGAGTACTTCCAGGTGGCCGAATCGCCGACCGGAGAAATCATGGGCTACATTATGGGCAAGGCGGAAGGTCAAGGCGAAAGCTGGCACGGCCACGTAACGGCTCTTACCGTGTCGCCCGACTACCGACGGCTCGGCCTAGCAGCTACGCTGATGAGCTTCCTGGAGGATGTGAGCGAAAAGAAACGGTGCTACTTTGTAGATCTGTTTGTTCGCGTGAGCAATAAAATTGCCATCGAAATGTACACCAAGCTAGGCTACATCGTGTACCGGACGGTGCTCGAGTATTACGTCGGCGATCCGGACGAGGATGCGTACGACATGCGGAAGGCCTGCTCGAGGGATGTTCACAAAAAGTCCGTTATACCGCTGGAGCACCCGGTACGGCCCGAAGAGGTGGATTGATAACGACCCAAACGAGGCAGCGAA]

[+] EMBL BM600201             [CCGGAAAAACATTGCCAGCCGGCTGCAAGAGCTCGTGCACTTTTTAGTTATTTACTTTTATTGAAATTTCCCAATTAAAAAACTTACACCTAGCCAACATGACCACCCTGAGGCCCTTCACCTGCAACGATATGTTCCGGTTCAACAAAGTGAACCTGGACCCACTGACCGAAACCTACTGTCTTTCGTTCTACATGCAGTACCTGGCACATTGGCCAGAGTACTTCCAGGTGGCCGAATCGCCGACCGGAGAAATCATGGGCTACATTATGGGCAAGGCGGAAGGTCAAGGCGAAAGCTGGCACGGCCACGTAACGGCTCTTACCGTGTCGCCCGACTACCGACGGCTCGGCCTAGCAGCTACGCTGATGAGCTTCCTGGAGGATGTGAGCGAAAAGAAACGGTGCTACTTTGTAGATCTGTTTGTTCGCGTGAGCAATAAAATTGCCATCGAAATGTACACCAAGCTAGGCTACATCGTGTACCGGACGGTGCTCGAGTATTACGTCGGCGATCCGGACGAGGATGCGTACGACATGCGGAAGGCCTGCT                                                                                            ]
[+] EMBL BM577143             [                                                   ccgCTTTTATTGAAATTTCCCAATT AAAAACTTACACCTAGCCAACATGACCACCCTGAGGCCCTTCACCTGCAACGATATGTTCCGGTTCAACAAAGTGAACCTGGACCCACTGACCGAAACCTACTGTCTTTCGTTCTACATGCAGTACCTGGCACATTGGCCAGAGTACTTCCAGGTGGCCGAATCGCCGACCGGAGAAATCATGGGCTACATTATGGGCAAGGCGGAAGGTCAAGGCGAAAGCTGGCACGGCCACGTAACGGCTCTTACCGTGTCGCCCGACTACCGACGGCTCGGCCTAGCAGCTACGCTGATGAGCTTCCTGGAGGATGTGAGCGAAAAGAAACGGTGCTACTTTGTAGATCTGTTTGTTCGCGTGAGCAATAAAATTGCCATCGAAATGTACACCAAGCTAGGCTACATCGTGTACCGGACGGTGCTCGAGTATTACGTCGGCGATCCGGACGAGGATGCGTACGACATGCGGAAGGCCTGCTCGAGGGATGTTCACAAAAAGTCCGTTATACCGCTGGAGCACCCGGTACGGCCCGAAGAGGTGGATTGATAACGACCCAAACGAGGCAGCGAA]




>consensus_4577#1
CCGGAAAAACATTGCCAGCCGGCTGCAAGAGCTCGTGCACTTTTTAGTTATTTACTTTTA
TTGAAATTTCCCAATTAAAAAACTTACACCTAGCCAACATGACCACCCTGAGGCCCTTCA
CCTGCAACGATATGTTCCGGTTCAACAAAGTGAACCTGGACCCACTGACCGAAACCTACT
GTCTTTCGTTCTACATGCAGTACCTGGCACATTGGCCAGAGTACTTCCAGGTGGCCGAAT
CGCCGACCGGAGAAATCATGGGCTACATTATGGGCAAGGCGGAAGGTCAAGGCGAAAGCT
GGCACGGCCACGTAACGGCTCTTACCGTGTCGCCCGACTACCGACGGCTCGGCCTAGCAG
CTACGCTGATGAGCTTCCTGGAGGATGTGAGCGAAAAGAAACGGTGCTACTTTGTAGATC
TGTTTGTTCGCGTGAGCAATAAAATTGCCATCGAAATGTACACCAAGCTAGGCTACATCG
TGTACCGGACGGTGCTCGAGTATTACGTCGGCGATCCGGACGAGGATGCGTACGACATGC
GGAAGGCCTGCTCGAGGGATGTTCACAAAAAGTCCGTTATACCGCTGGAGCACCCGGTAC
GGCCCGAAGAGGTGGATTGATAACGACCCAAACGAGGCAGCGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4577#0      -----CCGACATTGCCAGCCGGCTGCAAGAGCTCGTGCACTTTTTAGTTATTTACTTTTA 55
consensus_4577#1      CCGGAAAAACATTGCCAGCCGGCTGCAAGAGCTCGTGCACTTTTTAGTTATTTACTTTTA 60
                              ****************************************************

consensus_4577#0      TTGAAATTTCCCAATTAAAAA-CTTACACCTAGCCAACATGACCACCCTGAGGCCCTTCA 114
consensus_4577#1      TTGAAATTTCCCAATTAAAAAACTTACACCTAGCCAACATGACCACCCTGAGGCCCTTCA 120
                      ********************* **************************************

consensus_4577#0      CCTGCAACGATATGTTCCGGTTCAACAAAGTGTGCGTGCAAAGAGCTTGGCGATGCAGCG 174
consensus_4577#1      CCTGCAACGATATGTTCCGGTTCAACAAAGTG---------------------------- 152
                      ********************************                            

consensus_4577#0      CATTCTGGTACAGTGCGTTCGCTAACGACAAGAATGTTCCTTTTCTTCCCCGCCCCACAG 234
consensus_4577#1      ------------------------------------------------------------
                                                                                  

consensus_4577#0      GAACCTGGACCCACTGACCGAAACCTACTGTCTTTCGTTCTACATGCAGTACCTGGCACA 294
consensus_4577#1      -AACCTGGACCCACTGACCGAAACCTACTGTCTTTCGTTCTACATGCAGTACCTGGCACA 211
                       ***********************************************************

consensus_4577#0      TTGGCCAGAGTACTTCCAGGTGGCCGAATCGCCGACCGGAGAAATCATGGGCTACATTAT 354
consensus_4577#1      TTGGCCAGAGTACTTCCAGGTGGCCGAATCGCCGACCGGAGAAATCATGGGCTACATTAT 271
                      ************************************************************

consensus_4577#0      GGGCAAGGCGGAAGGTCAAGGCGAAAGCTGGCACGGCCACGTAACGGCTCTTACCGTGTC 414
consensus_4577#1      GGGCAAGGCGGAAGGTCAAGGCGAAAGCTGGCACGGCCACGTAACGGCTCTTACCGTGTC 331
                      ************************************************************

consensus_4577#0      GCCCGACTACCGACGGCTCGGCCTAGCAGCTACGCTGATGAGCTTCCTGGAGGATGTGAG 474
consensus_4577#1      GCCCGACTACCGACGGCTCGGCCTAGCAGCTACGCTGATGAGCTTCCTGGAGGATGTGAG 391
                      ************************************************************

consensus_4577#0      CGAAAAGAAACGGTGCTACTTTGTAGATCTGTTTGTTCGCGTGAGCAATAAAATTGCCAT 534
consensus_4577#1      CGAAAAGAAACGGTGCTACTTTGTAGATCTGTTTGTTCGCGTGAGCAATAAAATTGCCAT 451
                      ************************************************************

consensus_4577#0      CGAAATGTACACCAAGCTAGGCTACATCGTGTACCGGACGGTGCTCGAGTATTACGTCGG 594
consensus_4577#1      CGAAATGTACACCAAGCTAGGCTACATCGTGTACCGGACGGTGCTCGAGTATTACGTCGG 511
                      ************************************************************

consensus_4577#0      CGATCCGGACGAGGATGCGTACGACATGCGGAAGGCCTGCTCGAGGGATGTTCACAAAAA 654
consensus_4577#1      CGATCCGGACGAGGATGCGTACGACATGCGGAAGGCCTGCTCGAGGGATGTTCACAAAAA 571
                      ************************************************************

consensus_4577#0      GTCCGTTATACCGCTGGAGCACCCGGTACGGGCCCGAAGA-------------------- 694
consensus_4577#1      GTCCGTTATACCGCTGGAGCACCCGGTACGG-CCCGAAGAGGTGGATTGATAACGACCCA 630
                      ******************************* ********                    

consensus_4577#0      --------------
consensus_4577#1      AACGAGGCAGCGAA 644