|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4581#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 940 fasta sequence
[ATGTTGAGGCTATGGGGAGAAAAAGAACCAATTCAAATGTAAGAAATGCACCACTACTACTCAAAAACTGCTTCACGGACCGTTATTGTCGTCGTGGTGATCGGTAGTGATCTTGAGCTACGATCCATCGCTGAGGAAATGGTAACAAACGGAAAGGAAGCTCTATAGAGACTGTAAGCATCATCATTACACATCCTACATACAATACCCACACACATACACCATTGAAGAGGCATACGGAAAGCGAACGAACATTATTCAAAGTATTGGAAACACACACGGGATTAACTCCTATATAGGGGGGTACATCCTTTGAATGTACAGGAAGTAATGTGTTAACGAAACTCATCTCTCTAATCAAATATCTTAGTGCAATGCTTTCATTGCCCGCCAGCAGCAGCATTATACTAGAATAGGAAGGACGCGTTTTACAGTTTTGGTTGTTTTTCTCTTGCTCACATGCCGCAGTTGGTATGAAAATTGCTTACACTCGACCCGCAGGCTCATGTGTAGGAGCAGCTGTTTCTTGCTAACGATATTGTGGTTCGACGTCTAATTCCTCCGACCCGGAAAACACAAGAGCGTGGGGATGCGCGTTCAATTCGGTGCAAACACTCCGAGCTTAAAAACAGGCATTAGGTTCACAACAAGTTTTAAACGCAACTAT---ACAGACAGAACACATACATATATAAAATCAGAAACCAGCGACCAGAACCCGGACCGATTCCCCGGTATACAAAGTATGCGAGCATGGGAACGGCCCTATCCACCAGGGATAGAAGAACGGAAATACAATTATCGATATAGTTTATGTAAAAGCTTTGCCTTATAAAACGTAAGTGGAAACAAACAAAAAAAACCGTGGTGCGAAACCAAAAGATTCTCTATATATACAGATATATACAAGGATATTAATTATACAAAATATTAACTTCTGCGA]
[+] EMBL BX615603 [ATGTTGAGGCTATGGGGAGAAAAAGAACCAATTCAAATGTAAGAAATGCACCACTACTACTCAAAAACTGCTTCACGGACCGTTATTGTCGTCGTGGTGATCGGTAGTGATCTTGAGCTACGATCCATCGCTGAGGAAATGGTAACAAACGGAAAGGAAGCTCTATAGAGACTGTAAGCATCATCATTACACATCCTACATACAATACCCACACACATACACCATTGAAGAGGCATACGGAAAGCGAACGAACATTATTCAAAGTATTGGAAACACACACGGGATTAACTCCTATATAGGGGGGTACATCCTTTGAATGTACAGGAAGTAATGTGTTAACGAAACTCATCTCTCTAATCAAATATCTTAGTGCAATGCTTTCATTGCCCGCCAGCAGCAGCATTATACTAGAATAGGAAGGACGCGTTTTACAGTTTTGGTTGTTTTTCTCTTGCTCACATGCCGCAGTTGGTATGAAAATTGCTTACACTCGACCCGCAGGCTCATGTGTAGGAGCAGCTGTTTCTTGCTAACGATATTGTGGTTCGACGTCTAATTCCTCCGACCCGGAAAACACAAGAGCGTGGGGATGCGCGTTCAATTCGGTGCAAACACTCCGAGCTTAAAAACAGGCATTAGGTTCACAACAAGTTTTAAACGCAACTAT ACAGACAGAACACATACATATATAAAATCAGAAACCAGCGACCAGAACCCGGACCGATTCCCCGGTATACAAA ]
[+] EMBL BX608888 [ GAGCAGCTGTTTCTTGCTAACGATATTGTGGTTTGACGTCTAATTCCTCCGACCCGGCAAACACAAGAGCGTGGGGATGCGCGTTCAATTCGGTGCAAACACTCCGAGCTTAAAAACAGGCATTAGGTTCACAACAACTTTTAAACGCAAATATACCACAAACAAAACACATACATATATAAAATCAGAAACCAGCGACCAGGACCCGGACCGGTTCCCCGGTACACAGAGTATGCGAGCATGGGAACGGCCCTATCCACCAGGGATAGAAGAACGGAAATACAATTATCGATATAGTTTATGTAAAAGCTTTGCCTTATAAAACGTAAGTGGAAACAAACAAAAAAAACCGTGGTGCGAAACCAAAAGATTCTCTATATATACAGATATATACAAGGATATTAATTATACAAAATATTAACTTCTGCGA]
consensusID : consensus_4581#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 147 fasta sequence
[CTACATACAATACCCACACACATACACCATTGCAAGAGGCATACGGAAAGCGAACGAACATTATTCAAAGGGGGGGTGGGTACATCCTTTGAATGTACAGGAAGTAATGAGTTAACGAAACTCATCTCTCTAATCAAATATCTTAGT]
[+] EMBL BX610495 [CTACATACAATACCCACACACATACACCATTGCAAGAGGCATACGGAAAGCGAACGAACATTATTCAAAGGGGGGGTGGGTACATCCTTTGAATGTACAGGAAGTAATGAGTTAACGAAACTCATCTCTCTAATCAAATATCTTAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4581#0 ATGTTGAGGCTATGGGGAGAAAAAGAACCAATTCAAATGTAAGAAATGCACCACTACTAC 60
consensus_4581#1 ------------------------------------------------------------
consensus_4581#0 TCAAAAACTGCTTCACGGACCGTTATTGTCGTCGTGGTGATCGGTAGTGATCTTGAGCTA 120
consensus_4581#1 ------------------------------------------------------------
consensus_4581#0 CGATCCATCGCTGAGGAAATGGTAACAAACGGAAAGGAAGCTCTATAGAGACTGTAAGCA 180
consensus_4581#1 ------------------------------------------------------------
consensus_4581#0 TCATCATTACACATCCTACATACAATACCCACACACATACACCATTG-AAGAGGCATACG 239
consensus_4581#1 ---------------CTACATACAATACCCACACACATACACCATTGCAAGAGGCATACG 45
******************************** ************
consensus_4581#0 GAAAGCGAACGAACATTATTCAAAGTATTGGAAACACACACGGGATTAACTCCTATATAG 299
consensus_4581#1 GAAAGCGAACGAACATTATTCAAAG----------------GGGG--------------G 75
************************* *** *
consensus_4581#0 GGGGGTACATCCTTTGAATGTACAGGAAGTAATGTGTTAACGAAACTCATCTCTCTAATC 359
consensus_4581#1 GTGGGTACATCCTTTGAATGTACAGGAAGTAATGAGTTAACGAAACTCATCTCTCTAATC 135
* ******************************** *************************
consensus_4581#0 AAATATCTTAGTGCAATGCTTTCATTGCCCGCCAGCAGCAGCATTATACTAGAATAGGAA 419
consensus_4581#1 AAATATCTTAGT------------------------------------------------ 147
************
consensus_4581#0 GGACGCGTTTTACAGTTTTGGTTGTTTTTCTCTTGCTCACATGCCGCAGTTGGTATGAAA 479
consensus_4581#1 ------------------------------------------------------------
consensus_4581#0 ATTGCTTACACTCGACCCGCAGGCTCATGTGTAGGAGCAGCTGTTTCTTGCTAACGATAT 539
consensus_4581#1 ------------------------------------------------------------
consensus_4581#0 TGTGGTTCGACGTCTAATTCCTCCGACCCGGAAAACACAAGAGCGTGGGGATGCGCGTTC 599
consensus_4581#1 ------------------------------------------------------------
consensus_4581#0 AATTCGGTGCAAACACTCCGAGCTTAAAAACAGGCATTAGGTTCACAACAAGTTTTAAAC 659
consensus_4581#1 ------------------------------------------------------------
consensus_4581#0 GCAACTATACAGACAGAACACATACATATATAAAATCAGAAACCAGCGACCAGAACCCGG 719
consensus_4581#1 ------------------------------------------------------------
consensus_4581#0 ACCGATTCCCCGGTATACAAAGTATGCGAGCATGGGAACGGCCCTATCCACCAGGGATAG 779
consensus_4581#1 ------------------------------------------------------------
consensus_4581#0 AAGAACGGAAATACAATTATCGATATAGTTTATGTAAAAGCTTTGCCTTATAAAACGTAA 839
consensus_4581#1 ------------------------------------------------------------
consensus_4581#0 GTGGAAACAAACAAAAAAAACCGTGGTGCGAAACCAAAAGATTCTCTATATATACAGATA 899
consensus_4581#1 ------------------------------------------------------------
consensus_4581#0 TATACAAGGATATTAATTATACAAAATATTAACTTCTGCGA 940
consensus_4581#1 -----------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||