These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4589#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1242 fasta sequence [GATGACAAAAATGACGAAAACTTTGATGTGCATCAACTAAATCAGCTAAAGTTTGATATGCAGGAAGTTTTATCGCGTGGAAATATAATGTTGGCAATGTGTTCTAGCTTGCGTGAAGTCTCAGAATCTATTGATACCTATCCGTCTAATTCGAGTGATTCTACTCGAAAAGAACAGTCAGAAAATTTTAATAATCTAAATGAATGTGATGCAAATTATTCTCTATTTTCGTAAAATGAGTTAGGCTTAAAAAAACGAGCCACTTACGAAAAACAAGTCACGAGCCCATTTCACCATCCCTCTACGGAACATGCAACACCTTTGGTAGGTTTGCTGTTTTCGTCATCTGAGAAAATATCCGATGATGATGTTACCGACAATTTAATAAATAACGATCAAGATAAGGAAACTGGCCATGATGATGTAGCTTTGACAAAAAAGAAAACTAAAACCATGTATACATTCATAGA-CCGGACGATAAAGTACGACGTTGGCATTACCCAAATAACAGTCTAAGTAATAATAAAAGTACATCTATTATTATGACAACGATGGGAGATCCAGAAGTTGATAGTGACGATGAAGATGAGAAGCGTGATGAAGGAGATGATGGATTAGAGCCATTGATAGCTTTTCAA-AAAACTTCGTCATATTTAATTTCTGATACTACAAATATTGAAAACAATAACTATTCGACATCCAGTGAAGGGTCGCTGTTGGGAATACAAAATGAAATGTCTGTATCAATGGCAGCACTGCCTATAGAAAATGTACGATGCGTTCACGGGGTAAAGAATTTCAAGAACCTGTTCATGTATCAGATTCACGCAGAATCCGNAATTTATAACACGAATAAGAACAGAACCAACTGTCGCTCTCGATGATGATTCCACCATTGCTTCATCACCAGAGTTTAATACCTAATAGTAATTCAAGCAGAATTAGACACANAGGCCCTGNATAGCCTTCTTCCATCACAAACGCCACGACNTACCCAGGTGATGGTACCCCCGCCAAGGGAAGTTGGCTTAATGGGANAAAACTGGGGAAGAACACAATCAAAGAAGCAGACGCGAACAATAACTGGCTGGTTTTGGACTAAAGTAAAAGCCTANTGANTGTTTTNCCACTCNCACATCCAANAAGTTGTCGTGGGTNAACAGGCNATGGGCACATGTACGGNACCCTCTTACGAACGGNTNATTTACATTCNACCTATGGTTAAGTCATCCGTTAGAATCA] [+] EMBL BX612115 [GATGACAAAAATGACGAAAACTTTGATGTGCATCAACTAAATCAGCTAAAGTTTGATATGCAGGAAGTTTTATCGCGTGGAAATATAATGTTGGCAATGTGTTCTAGCTTGCGTGAAGTCTCAGAATCTATTGATACCTATCCGTCTAATTCGAGTGATTCTACTCGAAAAGAACAGTCAGAAAATTTTAATAATCTAAATGAATGTGATGCAAATTATTCTCTATTTTCGTAAAATGAGTTAGGCTTAAAAAAACGAGCCACTTACGAAAAACAAGTCACGAGCCCATTTCACCATCCCTCTACGGAACATGCAACACCTTTGGTAGGTTTGCTGTTTTCGTCATCTGAGAAAATATCCGATGATGATGTTACCGACAATTTAATAAATAACGATCAAGATAAGGAAACTGGCCATGATGATGTAGCTTTGACAAAAAAGAAAACTAAAACCATGTATACATTCATAGA CCGGACGATAAAGTACGACGTTGGCATTACCCAAATAACAGTCTAAGTAATAATAAAAGTACATCTATTATTATGACAACGATGGGAGATCCAGAAGTTGATAGTGACGATGAAGATGAGAAGCGTGATGAAGGAGATGATGGATTAGAGCCATTGATAGCTTTTCAA AAAACTTCGTCATATTTAATTTCTGATACTACAAATATTGAAAACAATAACTATTCGACATCCAGTGAAGGGTCGCTGTTGGGAATACAAAATGAAATGTCTGTATCAATGGCAGC ] [+] EMBL AL933357 [ taCTTTGAC AAAAAGAAAACTAAAA CATGTATACATTCATAGAGCCGGACGATAAAGTACGACGTTGGCATTACCCAAATAACAGTCTAAGTAATAATAAAAGTACATCTATTATTATGACAACGATGGGAGATCCAGAAGTTGATAGTGACGATGAAGATGAGAAGCGTGATGAAGGAGATGATGGATTAGAGCCATTGATAGCTTTTCAACAAAACTTCGTCATATTTAATTTCTGATACTACAAATATTGAAAACAATAACTATTCGACATCCAGTGAAGGGTCGCTGTTGGGAATACNAAATGAAATGTCTGTATCAATGGCAGCACTGCCTATAGAAAATGTACGATGCGTTCACGGGGTAAAGAATTTCAAGAACCTGTTCATGTATCAGATTCACGCAGAATCCGNAATTTATAACACGAATAAGAACAGAACCAACTGTCGCTCTCGATGATGATTCCACCATTGCTTCATCACCAGAGTTTAATACCTAATAGTAATTCAAGCAGAATTAGACACANAGGCCCTGNATAGCCTTCTTCCATCACAAACGCCACGACNTACCCAGGTGATGGTACCCCCGCCAAGGGAAGTTGGCTTAATGGGANAAAACTGGGGAAGAACACAATCAAAGAAGCAGACGCGAACAATAACTGGCTGGTTTTGGACTAAAGTAAAAGCCTANTGANTGTTTTNCCACTCNCACATCCAANAAGTTGTCGTGGGTNAACAGGCNATGGGCACATGTACGGNACCCTCTTACGAACGGNTNATTTACATTCNACCTATGGTTAAGTCATCCGTTAGAATCA] consensusID : consensus_4589#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 945 fasta sequence [ACGGCCAGAATCCGGCGACGATGNTAGCATCTGAGAAAATATCCGATCGATGATGTTACCTGACAATTTAATAAATAACGATCNAAGATAAGGAAACTGGTCATGATGATGTAGCTTTGACAAAGAAAGCAAAACTAAAACCATGTATACAGTTCATAGAGCCGGACGAGTAAAGGTACGACGGTTGGCATTACCCAAAGTAACAGGTCGTAAGGTAATAAAGAACAAAGGTACATCGTAGTTATTAGTGACAACGACTTGGAGATCCAGAAGGTTGANTAGGTGACGTAGTGAANGGAGTAGAAGCGGTGATGAACACGGTGGCAGGNAANTGCGACTGGGTAAGATNTTAGGAATGGACGCCACTTGTTGGACAACTTAAGGCCGTNNTGTGTCCAGACGAAGAGAGNAGCCGTTTTCCGGAGTNCCNGTAACGTGTCGTCANCACAGTANTTTGACCTNGGCAATTAACNTTAACCNAGCAGAAAGTNAACGTGCTGGAACAGGAAGCCAAGAGTGANAAGCTTGAGTCTGCCGGGCAGCCAAAGTACCCCCACGGGTGGCAGAAGGGGGGGGTCCCGACCCGAGTGGACTTATNNGGNGGTCACAGANCTTCATCCNGCAGAACAAAAGCTGGGAAACAAACAACGTTGGGAGTTGCATGGGAGTGCAGTTCCCAACAACATTGGTGGCCCCACGGGCTCANCGACCTTGGGNNGCCCGTCTCAGTTGAATGAGAAGCNACGGACAGTTGGGTTCAAGCCGGGAANTGGGCCAGGGTTTTACCCAACGAGGGGCGTTNACAGANAACNGGCACAAAGNGTATTGTACAGACAGAAGGGAAAAAATNCNCCGCTTGGGTCACTTCCAATTTTGGNGTNAACGTTTCCGCAAGGGGAACGGTTGTCCANAAGGNNGCANGGGAGCAGAAGTTNCCACCNNGGG] [+] EMBL BX469028 [ACGGCCAGAATCCGGCGACGATGNTAGCATCTGAGAAAATATCCGATCGATGATGTTACCTGACAATTTAATAAATAACGATCNAAGATAAGGAAACTGGTCATGATGATGTAGCTTTGACAAAGAAAGCAAAACTAAAACCATGTATACAGTTCATAGAGCCGGACGAGTAAAGGTACGACGGTTGGCATTACCCAAAGTAACAGGTCGTAAGGTAATAAAGAACAAAGGTACATCGTAGTTATTAGTGACAACGACTTGGAGATCCAGAAGGTTGANTAGGTGACGTAGTGAANGGAGTAGAAGCGGTGATGAACACGGTGGCAGGNAANTGCGACTGGGTAAGATNTTAGGAATGGACGCCACTTGTTGGACAACTTAAGGCCGTNNTGTGTCCAGACGAAGAGAGNAGCCGTTTTCCGGAGTNCCNGTAACGTGTCGTCANCACAGTANTTTGACCTNGGCAATTAACNTTAACCNAGCAGAAAGTNAACGTGCTGGAACAGGAAGCCAAGAGTGANAAGCTTGAGTCTGCCGGGCAGCCAAAGTACCCCCACGGGTGGCAGAAGGGGGGGGTCCCGACCCGAGTGGACTTATNNGGNGGTCACAGANCTTCATCCNGCAGAACAAAAGCTGGGAAACAAACAACGTTGGGAGTTGCATGGGAGTGCAGTTCCCAACAACATTGGTGGCCCCACGGGCTCANCGACCTTGGGNNGCCCGTCTCAGTTGAATGAGAAGCNACGGACAGTTGGGTTCAAGCCGGGAANTGGGCCAGGGTTTTACCCAACGAGGGGCGTTNACAGANAACNGGCACAAAGNGTATTGTACAGACAGAAGGGAAAAAATNCNCCGCTTGGGTCACTTCCAATTTTGGNGTNAACGTTTCCGCAAGGGGAACGGTTGTCCANAAGGNNGCANGGGAGCAGAAGTTNCCACCNNGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4589#0 GATGACAAAAATGACGAAAACTTTGATGTGCATCAACTAAATCAGCTAAAGTTTGATATG 60 consensus_4589#1 ------------------------------------------------------------ consensus_4589#0 CAGGAAGTTTTATCGCGTGGAAATATAATGTTGGCAATGTGTTCTAGCTTGCGTGAAGTC 120 consensus_4589#1 ------------------------------------------------------------ consensus_4589#0 TCAGAATCTATTGATACCTATCCGTCTAATTCGAGTGATTCTACTCGAAAAGAACAGTCA 180 consensus_4589#1 ------------------------------------------------------------ consensus_4589#0 GAAAATTTTAATAATCTAAATGAATGTGATGCAAATTATTCTCTATTTTCGTAAAATGAG 240 consensus_4589#1 ------------------------------------------------------------ consensus_4589#0 TTAGGCTTAAAAAAACGAGCCACTTACGAAAAACAAGTCACGAGCCCATTTCACCATCCC 300 consensus_4589#1 ------------------------------------------------------------ consensus_4589#0 TCTACGGAACATGCAACACCTTTGGTAGGTTTGCTGTTTTCGTCATCTGAGAAAATATCC 360 consensus_4589#1 ---------------ACGGCCAGAATCCGGCGACGATGNTAG-CATCTGAGAAAATATCC 44 ** * * * * * * * ***************** consensus_4589#0 GAT-GATGATGTTACC-GACAATTTAATAAATAACGATCAA-GATAAGGAAACTGGCCAT 417 consensus_4589#1 GATCGATGATGTTACCTGACAATTTAATAAATAACGATCNAAGATAAGGAAACTGGTCAT 104 *** ************ ********************** * ************** *** consensus_4589#0 GATGATGTAGCTTTGACAAAAAAG--AAAACTAAAACCATGTATACA-TTCATAGA-CCG 473 consensus_4589#1 GATGATGTAGCTTTGACAAAGAAAGCAAAACTAAAACCATGTATACAGTTCATAGAGCCG 164 ******************** ** ********************* ******** *** consensus_4589#0 GACGAT--AAAGTACGACG-TTGGCATTACCCAAA-TAACAGTCT---AAGTAATAA--- 523 consensus_4589#1 GACGAGTAAAGGTACGACGGTTGGCATTACCCAAAGTAACAGGTCGTAAGGTAATAAAGA 224 ***** ** ******** *************** ****** * ******* consensus_4589#0 -TAAAAGTACATCT--ATTATTA-TGACAACGA-TGGGAGATCCAGAAGTTGATAGTGAC 578 consensus_4589#1 ACAAAGGTACATCGTAGTTATTAGTGACAACGACTTGGAGATCCAGAAGGTTGANTAGGT 284 *** ******* ****** ********* * ************* * * consensus_4589#0 GATGAAGATGAGAAGCGTGATGAAGGAGATGATGGATTAGAGCCATTGATAGCTTTTCAA 638 consensus_4589#1 GACGTAG-TGAANGGAGTAGAAGCGGTGATGA-ACACGGTGGCAGGNAANTGCGACTGGG 342 ** * ** *** * ** ** ***** * ** * ** * consensus_4589#0 AAAACTTCGTCATATTTAATTTCTGATACTACAAATATTGAAAACAATAACTATTCGACA 698 consensus_4589#1 TAAGATNT-TAGGAATGGACGCCACTTGTTGGACA-ACTTAAGGCCGTNNTGTGTCCAGA 400 ** * * * * * * * * * * * * ** * * ** * * consensus_4589#0 TCCAGTGAAGGGTCGCTGTTGGGAATACAAAATGAAATGTCTGTATCAATGGCAGCACTG 758 consensus_4589#1 CGAAGAGAGNAGCCGTTTTCCGGAGTNCCNG-TAACGTGTCGTCANCA-CAGTANTTTGA 458 ** ** * ** * * *** * * * * **** * ** * * consensus_4589#0 CCTATAGAAAATGTACGATGCGTTCACGGGGTAAAGAATTTCAAGAACCTGTTCATGTAT 818 consensus_4589#1 CCTNGGCAATTAACNTTAACCNAGCAGAAAGTNAACGTGCTGGAACAGGAAGCCAAGAGT 518 *** ** * * ** ** ** * * * ** * * consensus_4589#0 CAGATTCACGCAGAATCCGNA-ATTTATAACACGAATAAGAACAGAACCAACTGTCGCTC 877 consensus_4589#1 GANAAGCTTGAGTCTGCCGGGCAGCCAAAGTACCCCCACGGGTGGCAGAAGGGGGGGGTC 578 * * * * *** * * * ** * * * * * * * ** consensus_4589#0 TCGATGATGATTCCACCATTGCTTCATCACCAGAGTTTAATACCTAATAGTAATTCAAGC 937 consensus_4589#1 CCGACCCGAGTGGACTTATNNGGNGGTCAC-AGANCTTCATCCNGCAGAACAAAAGCTGG 637 *** * ** **** *** ** ** * * * ** * consensus_4589#0 AGAATTAGACACAN-AGGCCCTGNATAGCCTT-CTTCCATCACAAACGCCACGACNTACC 995 consensus_4589#1 GAAACAAACAACGTTGGGAGTTGCATGGGAGTGCAGTTCCCAACAACATTGGTGGCCCCA 697 ** * ** ** ** ** * * * ** *** * consensus_4589#0 CAGGTGATGGTACCCCCGCCAAGGGAAGTTGGCTTAATGGGANAAAACTGG-GGAAGAAC 1054 consensus_4589#1 CGGGCTCANCGACCTTGGGNNGCCCGTCTCAGTTGAATGAGAAGCNACGGACAGTTGGGT 757 * ** *** * * * * **** ** ** * * * consensus_4589#0 ACAATCAAAGAAGCAGACGCGAACAATAACTGGCTGGTTTTGGACTAAAGTAA-AAGCCT 1113 consensus_4589#1 TCAAGCCGGGAANTGGGCCAGGGTTTTACCCAACGAGGGGCGTTNACAGANAACNGGCAC 817 *** * *** * * * ** * * * * * ** ** consensus_4589#0 ANTGANTGTTTTNCCACTCNCACATCCAANAAGTTGTCG-TGGGTNAACAGGCNATGGGC 1172 consensus_4589#1 AAAGNGTATTGTAC-AGACAGAAGGGAAAAAATNCNCCGCTTGGGTCACTTCCAATTTTG 876 * * * ** * * * * * ** ** ** * ** ** * ** consensus_4589#0 ACATGTACGGNACCCTCTTACGAACGGNTNATTTACATTCNACCTATGGTTA--AGTCAT 1230 consensus_4589#1 GNGTNAACGTTTCCGCAAGGGGAACGGTTGTCCANAAGGNNGCANGGGAGCAGAAGTTNC 936 * *** ** ****** * * * * * * *** consensus_4589#0 CCGTTAGAATCA 1242 consensus_4589#1 CACCNNGGG--- 945 * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||