These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4590#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 956 fasta sequence [AAACTAGTGAAAGACAAAATAATGGAATTGTAAAGAGACAGACAGACACACACCACTGCTGTGCCAGCACGCGAACGGAAAAAAATGAAACACGGCCACAGTATTGCCTGGATACAGCAGGTGTGACCGACTAGTTACAGTACAGCTGGATACGATACCGTGTGGGGCGGCAGCAAGCACGAACTAACCCCACCAAATGGATGCGGCCAAACAGCGAGTGGGTGATGTGGTCGGAGCTGTAAAGCTATCGATGTAACTGTATATAAGAGCGGGACCACAGCCAAACACGCTTTCGTCTAATAACAACACACACAAAAACAACCGACCAATCGACGCTAGTGTGTGTATGTGCTTTTATGTGCATTTACTGTGTTGCTGCCCCAATTTTCTAAAAACCAAAAACAAACAAAAAAACCGTGTCCCGTTCCGTTTCCGCTATATTTCGCCCCGAATCCCAAGAATAACCTAAGCATGGCAACCGAAAGCGGTCTACGCGTGGTGCGCCAATACTCCGACGAGGGACGTACGCTAGCACTGCGAACGCTGAGCGAACAAACAGTGAGGCAGGGACGGTGGTGCGTAACGCGTGGAGCAGCTTCATCCAGCTGGTGCAGCGCTTGAAGACGTCGGCCCGGGAAGTGCTGGACCCGTCGGTGCTGTACGAAGAGCTGCGCATATTTTTCCGCGATGAAATCGTTCGGAATAACGCATTCGCGATCCTGATCGGTCTCGGGTTCGGTACGACCGGCGGCTTCATGCTGGGCATGTGGCTGGCCCGACCCCACCTGCCGACGCCGATCATGAAATCGATCGCGTCCACCTCGTTCCGCGACCCGGACAATGTGGTCGTCTGCCAGACGGCGGTGCCCCAGTTCCAGTCCGCCTCCGACATACTGGTGCGGGTGCGGGCGGCCTCCCTCAACCGGATCGATCGGCGCATTGCGTTCGGGTATGGG] [+] EMBL CNS08FTY [AAACTAGTGAAAGACAAAATAATGGAATTGTAAAGAGACAGACAGACACACACCACTGCTGTGCCAGCACGCGAACGGAAAAAAATGAAACACGGCCACAGTATTGCCTGGATACAGCAGGTGTGACCGACTAGTTACAGTACAGCTGGATACGATACCGTGTGGGGCGGCAGCAAGCACGAACTAACCCCACCAAATGGATGCGGCCAAACAGCGAGTGGGTGATGTGGTCGGAGCTGTAAAGCTATCGATGTAACTGTATATAAGAGCGGGACCACAGCCAAACACGCTTTCGTCTAATAACAACACACACAAAAACAACCGACCAATCGACGCTAGTGTGTGTATGTGCTTTTATGTGCATTTACTGTGTTGCTGCCCCAATTTTCTAAAAACCAAAAACAAACAAAAAAACCGTGTCCCGTTCCGTTTCCGCTATATTTCGCCCCGAATCCCAAGAATAACCTAAGCATGGCAACCGAAAGCGGTCTACGCGTGGTGCGCCAATACTCCGACGAGGGACGTACGCTAGCACTGCGAACGCTGAGCGAACAAACAGTGAGGCAGGGACGGTGGTGCGTAACGCGTGGAGCAGCTTCATCCAGCTGGTGCAGCGCTTGAAGACGTCGGCCCGGGAAGTGCTGGACCCGTCGGTGCTGTACGAAGAGCTGCGCATATTTTTCCGCGATGAAATCGTTCGGAATAACGCATTCGCGATCCTGATCGGTCTCGGGTTCGGTACGACCGGCGGCTTCATGCTGGGCATGTGGCTGGCCCGACCCCACCTGCCGACGCCGATCATGAAATCGATCGCGTCCACCTCGTTCCGCGACCCGGACAATGTGGTCGTCTGCCAGACGGCGGTGCCCCAGTTCCAGTCCGCCTCCGACATACTGGTGCGGGTGCGGGCGGCCTCCCTCAACCGGATCGATCGGCGCATTGCGTTCGGGTATGGG] consensusID : consensus_4590#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 723 fasta sequence [ACACCACTGTTGTGCCAGCACGAGAACGGAAGGACATGAGACACGGTCACAGCATTGCATGGGTACAGGCAGGAGTGAGCAAATAGTTACAGTACAGCTGGATACGATACCGTGTGTGGCGGCAGCAAGCACGAACTAACCCCACCAAATGGATGCGGCCAAACAGCGAGTGGGTGATGTGGTCGGAGCTGTAAAGAATAACCTAAGCATGGCAACCGAAAGCGGTCTACGCGTGGTGCGCCAATACTCCGACGAGGGACGTACGCTAGCACTGCGAACGCTGAGCGAAGCAAACAGTGAGGCAGGGACGGTGGTGCGTAACGCGTGGAGCAGCTTCATCCAGCTGGTGCAGCGCTTGAAGACGTCGGCCCGGGAAGTGCTGGACCCGTCGGTGCTGTACGAAGAGCTGCGCATATTTTTCCGCGATGAAATCGCTCGGAATAACGCATTCGCGATCCTGATCGGTCTCGGGTTCGGTACGACCGGCGGCTTCATGCTGGGCATGTGGCTGGCCCGACCCCACCTGCCCACGCCGATCATGAAATCGATCGCGTCCACCTCGTTCCGCGATCCGGACAATGTGGTCGTCTGCCAGACGGCGGTGCCCCAGTTCCAGTCCGCCTCCGACATACTGGTGCGGGTGCGGGCGGCCTCCCTCAACCGGATCGATCGCCGCATCGCGTTCGGGTATGGGCGCACGCTGCGGCGCATGATACGCACCTA] [+] EMBL BX627040 [ACACCACTGTTGTGCCAGCACGAGAACGGAAGGACATGAGACACGGTCACAGCATTGCATGGGTACAGGCAGGAGTGAGCAAATAGTTACAGTACAGCTGGATACGATACCGTGTGTGGCGGCAGCAAGCACGAACTAACCCCACCAAATGGATGCGGCCAAACAGCGAGTGGGTGATGTGGTCGGAGCTGTAAAGAATAACCTAAGCATGGCAACCGAAAGCGGTCTACGCGTGGTGCGCCAATACTCCGACGAGGGACGTACGCTAGCACTGCGAACGCTGAGCGAAGCAAACAGTGAGGCAGGGACGGTGGTGCGTAACGCGTGGAGCAGCTTCATCCAGCTGGTGCAGCGCTTGAAGACGTCGGCCCGGGAAGTGCTGGACCCGTCGGTGCTGTACGAAGAGCTGCGCATATTTTTCCGCGATGAAATCGCTCGGAATAACGCATTCGCGATCCTGATCGGTCTCGGGTTCGGTACGACCGGCGGCTTCATGCTGGGCATGTGGCTGGCCCGACCCCACCTGCCCACGCCGATCATGAAATCGATCGCGTCCACCTCGTTCCGCGATCCGGACAATGTGGTCGTCTGCCAGACGGCGGTGCCCCAGTTCCAGTCCGCCTCCGACATACT ] [+] EMBL BM654045 [ ccGGCAGGAGTGAGCAAATAGTTACAGTACAGCTGGATACGATACCGTGTGTGGCGGCAGCAAGCACGAACTAACCCCACCAAATGGATGCGGCCAAACAGCGAGTGGGTGATGTGGTCGGAGCTGTAAAGAATAACCTAAGCATGGCAACCGAAAGCGGTCTACGCGTGGTGCGCCAATACTCCGACGAGGGACGTACGCTAGCACTGCGAACGCTGAGCGAAGCAAACAGTGAGGCAGGGACGGTGGTGCGTAACGCGTGGAGCAGCTTCATCCAGCTGGTGCAGCGCTTGAAGACGTCGGCCCGGGAAGTGCTGGACCCGTCGGTGCTGTACGAAGAGCTGCGCATATTTTTCCGCGATGAAATCGCTCGGAATAACGCATTCGCGATCCTGATCGGTCTCGGGTTCGGTACGACCGGCGGCTTCATGCTGGGCATGTGGCTGGCCCGACCCCACCTGCCCACGCCGATCATGAAATCGATCGCGTCCACCTCGTTCCGCGATCCGGACAATGTGGTCGTCTGCCAGACGGCGGTGCCCCAGTTCCAGTCCGCCTCCGACATACTGGTGCGGGTGCGGGCGGCCTCCCTCAACCGGATCGATCGCCGCATCGCGTTCGGGTATGGGCGCACGCTGCGGCGCATGATACGCACCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4590#0 AAACTAGTGAAAGACAAAATAATGGAATTGTAAAGAGACAGACAGACACACACCACTGCT 60 consensus_4590#1 -------------------------------------------------ACACCACTGTT 11 ********* * consensus_4590#0 GTGCCAGCACGCGAACGGAAAAAAATGAAACACGGCCACAGTATTGCCTGGATACAG-CA 119 consensus_4590#1 GTGCCAGCACGAGAACGGAAGGACATGAGACACGGTCACAGCATTGCATGGGTACAGGCA 71 *********** ******** * **** ****** ***** ***** *** ***** ** consensus_4590#0 GGTGTGACCGACTAGTTACAGTACAGCTGGATACGATACCGTGTGGGGCGGCAGCAAGCA 179 consensus_4590#1 GGAGTGAGCAAATAGTTACAGTACAGCTGGATACGATACCGTGTGTGGCGGCAGCAAGCA 131 ** **** * * ********************************* ************** consensus_4590#0 CGAACTAACCCCACCAAATGGATGCGGCCAAACAGCGAGTGGGTGATGTGGTCGGAGCTG 239 consensus_4590#1 CGAACTAACCCCACCAAATGGATGCGGCCAAACAGCGAGTGGGTGATGTGGTCGGAGCTG 191 ************************************************************ consensus_4590#0 TAAAGCTATCGATGTAACTGTATATAAGAGCGGGACCACAGCCAAACACGCTTTCGTCTA 299 consensus_4590#1 TAAAG------------------------------------------------------- 196 ***** consensus_4590#0 ATAACAACACACACAAAAACAACCGACCAATCGACGCTAGTGTGTGTATGTGCTTTTATG 359 consensus_4590#1 ------------------------------------------------------------ consensus_4590#0 TGCATTTACTGTGTTGCTGCCCCAATTTTCTAAAAACCAAAAACAAACAAAAAAACCGTG 419 consensus_4590#1 ------------------------------------------------------------ consensus_4590#0 TCCCGTTCCGTTTCCGCTATATTTCGCCCCGAATCCCAAGAATAACCTAAGCATGGCAAC 479 consensus_4590#1 ----------------------------------------AATAACCTAAGCATGGCAAC 216 ******************** consensus_4590#0 CGAAAGCGGTCTACGCGTGGTGCGCCAATACTCCGACGAGGGACGTACGCTAGCACTGCG 539 consensus_4590#1 CGAAAGCGGTCTACGCGTGGTGCGCCAATACTCCGACGAGGGACGTACGCTAGCACTGCG 276 ************************************************************ consensus_4590#0 AACGCTGAGCGAA-CAAACAGTGAGGCAGGGACGGTGGTGCGTAACGCGTGGAGCAGCTT 598 consensus_4590#1 AACGCTGAGCGAAGCAAACAGTGAGGCAGGGACGGTGGTGCGTAACGCGTGGAGCAGCTT 336 ************* ********************************************** consensus_4590#0 CATCCAGCTGGTGCAGCGCTTGAAGACGTCGGCCCGGGAAGTGCTGGACCCGTCGGTGCT 658 consensus_4590#1 CATCCAGCTGGTGCAGCGCTTGAAGACGTCGGCCCGGGAAGTGCTGGACCCGTCGGTGCT 396 ************************************************************ consensus_4590#0 GTACGAAGAGCTGCGCATATTTTTCCGCGATGAAATCGTTCGGAATAACGCATTCGCGAT 718 consensus_4590#1 GTACGAAGAGCTGCGCATATTTTTCCGCGATGAAATCGCTCGGAATAACGCATTCGCGAT 456 ************************************** ********************* consensus_4590#0 CCTGATCGGTCTCGGGTTCGGTACGACCGGCGGCTTCATGCTGGGCATGTGGCTGGCCCG 778 consensus_4590#1 CCTGATCGGTCTCGGGTTCGGTACGACCGGCGGCTTCATGCTGGGCATGTGGCTGGCCCG 516 ************************************************************ consensus_4590#0 ACCCCACCTGCCGACGCCGATCATGAAATCGATCGCGTCCACCTCGTTCCGCGACCCGGA 838 consensus_4590#1 ACCCCACCTGCCCACGCCGATCATGAAATCGATCGCGTCCACCTCGTTCCGCGATCCGGA 576 ************ ***************************************** ***** consensus_4590#0 CAATGTGGTCGTCTGCCAGACGGCGGTGCCCCAGTTCCAGTCCGCCTCCGACATACTGGT 898 consensus_4590#1 CAATGTGGTCGTCTGCCAGACGGCGGTGCCCCAGTTCCAGTCCGCCTCCGACATACTGGT 636 ************************************************************ consensus_4590#0 GCGGGTGCGGGCGGCCTCCCTCAACCGGATCGATCGGCGCATTGCGTTCGGGTATGGG-- 956 consensus_4590#1 GCGGGTGCGGGCGGCCTCCCTCAACCGGATCGATCGCCGCATCGCGTTCGGGTATGGGCG 696 ************************************ ***** *************** consensus_4590#0 --------------------------- consensus_4590#1 CACGCTGCGGCGCATGATACGCACCTA 723 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||