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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4606#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 951 fasta sequence
[AGGCAAGAATCGCGCACGAGGGAATCAAATCACGGGGGGACTCCTTTACCTAAAACTTATCACGATACCGACGATGGGCGATGAAGAGAAACGGGAAAGTAAAACACGCGGAAAGAGGGAAACAACTAACCATACCAAATCAATATTATGCAAAATTTTAACCATGTAAGGATATTAAAATTAGAGAAATTGTTTTGTTTATTTCATCGGTTCGATGCGCAGTCGCAGCAAAGAGGCAAAGCAAATCTAACGATAGAAGAGTAAATTCAACCCAGTCTAGAAACGACGAGTATACAACCTTCATTCTATTTTACATATAGCAACATTACGTTTACGACGCGACTACCGAAGTACGTGCAACTGGGTAGAATGGCTTAGTATCTAGCACGAGGTAATTACCATTAATCGGCTGATTGATTTGATCCTCATACAGGCTGAAACTGAAATGTGTCGTTTAATCTGTCTAGAAGGAAGCTAGCCACTTTGAAGTGAACGCATTAAAGCAGTGCATTAACTAACTCATTCGATTGTAATTTTAGTGCATGGGGAGCAGTGTGCAAGTAGCGCATTATCGAGCATTGATTGAGTTTNNGGTTGCGTTTTGCGAGCCGTTTGCATATGCCTAGCCTAAGGAAGGAAACCACTCAACAGGCAANACGAGACAA-ACCCATTACGAACAACATTAGCGTGTTTTAATGCCAAACGGTGCAAAATTCGTGGTAGCCTTNTGATTTCGTAGAACTGGTTTAAAAGACCGTTCCCAGTNGACTGGTATAGGCNCTTGAAGAAGAAAACCGATTGGACANACCAAATTTTACCTTAACACACTNAGGTACCACCACCTTAGGCTACCTAANGTTNAAACAAATTCAGGAATTCAAGGGANANAATTACATTAATTCCCCCCATTAATTTGACAACAACACAACACACACACAGGCTTTTTTCGGC]
[+] EMBL BX467398 [AGGCAAGAATCGCGCACGAGGGAATCAAATCACGGGGGGACTCCTTTACCTAAAACTTATCACGATACCGACGATGGGCGATGAAGAGAAACGGGAAAGTAAAACACGCGGAAAGAGGGAAACAACTAACCATACCAAATCAATATTATGCAAAATTTTAACCATGTAAGGATATTAAAATTAGAGAAATTGTTTTGTTTATTTCATCGGTTCGATGCGCAGTCGCAGCAAAGAGGCAAAGCAAATCTAACGATAGAAGAGTAAATTCAACCCAGTCTAGAAACGACGAGTATACAACCTTCATTCTATTTTACATATAGCAACATTACGTTTACGACGCGACTACCGAAGTACGTGCAACTGGGTAGAATGGCTTAGTATCTAGCACGAGGTAATTACCATTAATCGGCTGATTGATTTGATCCTCATACAGGCTGAAACTGAAATGTGTCGTTTAATCTGTCTAGAAGGAAGCTAGCCACTTTGAAGTGAACGCATTAAAGCAGTGCATTAACTAACTCATTCGATTGTAATTTTAGTGCATGGGGAGCAGTGTGCAAGTAGCGCATTATCGAGCATTGATTGAGTTTNNGGTTGCGTTTTGCGAGCCGTTTGCATATGCCTAGCCTAAGGAAGGAAACCACTCAACAGGCAANACGAGACAA ACCCATTACGAACAACATTAGCGTGTTTTAATGCCAAACGGTGCAAAATTCGTGGTAGCCTTNTGATTTCGTAGAACTGGTTTAAAAGACCGTTCCCAGTNGACTGGTATAGGCNCTTGAAGAAGAAAACCGATTGGACANACCAAATTTTACCTTAACACACTNAGGTACCACCACCTTAGGCTACCTAANGTTNAAACAAATTCAGGAATTCAAGGGANANAATTACATTAATTCCCCCCATTAATTTGACAACAACACAACACACACACAGGCTTTTTTCGGC]
[+] EMBL BM596231 [ ccgGAGGGAAACAACTAACCATACCAAATCAATATTATGCAAAATTTTAACCATGTAAGGATATTAAAATTAGAGAAATTGTTTTGTTTATTTCATCGGTTCGATGCGCAGTCGCAGCAAAGAGGCAAAGCAAATCTAACGATAGAAGAGTAAATTCAACCCAGTCTAGAAACGACGAGTATACAACCTTCATTCTATTTTACATATAGCAACATTACGTTTACGACGCGACTACCGAAGTACGTGCAACTGGGTAGAATGGCTTAGTATCTAGCACGAGGTAATTACCATTAATCGGCTGATTGATTTGATCCTCATACAGGCTGAAACTGAAATGTGTCGTTTAATCTGTCTAGAAGGAAGCTAGCCACTTTGAAGTGAACGCATTAAAGCAGTGCATTAACTAACTCATTCGATTGTAATTTTAGTGCATGGGGAGCAGTGTGCAAGTAGCGCATTATCGAGCATTGATTGAGTTT TGGTTGCGTTTTGCGAGCCGTTTGCATATGCCTAGCCTAA GAAGGAAACCACTCAACAGGCAACAC ACACAACACCCATTACGAACAACATTAGCGTGTTTTA ]
consensusID : consensus_4606#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence
[GCAAGAATCGCCCGAGGTGCTGATCCTCAGCTATGTATGCTGGTTTTCTGGCCTCGGGTCAGTGAAACGATTCTTCGTGAACTGGTTTGAATGCGTATATCAAAGCGTTTTAAATGTAATTGTAATTTGTTCGGATGTGTTCGAAAATAAAAGATACATTTTGTTCTAAATATGTTTCACCTGGTCAACCAGCTCGATCTGGTACACGATGGACAGTATTTTTGAACCATATGAGCGAACCTCTACGGGGAGCTGGATAGTGGAATGCAACACGAATCAAAATCACTGGGGTGGACTCCTTTACCTAAAACTTATCACGATACCGACGATGGGCGATGAAGAGNAAACGGGAAAGTAAAACACGCGGAAAGAGGGAAACAACTAACCATACCAAATCAATATTCATGCAAAATTTTAACCATGCTACACGGCACTACTTACAAATTAGACGCANCATCNGTCCCCGTCNATCTTCATCGCGCTTCGATGCGCAGCTCGCAGCCAACAGAGGCACACAGCAAATCTAACGATANCACNNGCAGCTAACATNTCAACCCAGTCTACACAACGACGCAGCTATACAACCCTCTCATATCTATCTCTCTACANTACTACGCCAAACATTACGGTCTACGACGCCGCACTACCGAAGCTACGCTGCAACCTGGGCTAGANTGGCCTCTACNCTACTCTACGC]
[+] EMBL AL931185 [GCAAGAATCGCCCGAGGTGCTGATCCTCAGCTATGTATGCTGGTTTTCTGGCCTCGGGTCAGTGAAACGATTCTTCGTGAACTGGTTTGAATGCGTATATCAAAGCGTTTTAAATGTAATTGTAATTTGTTCGGATGTGTTCGAAAATAAAAGATACATTTTGTTCTAAATATGTTTCACCTGGTCAACCAGCTCGATCTGGTACACGATGGACAGTATTTTTGAACCATATGAGCGAACCTCTACGGGGAGCTGGATAGTGGAATGCAACACGAATCAAAATCACTGGGGTGGACTCCTTTACCTAAAACTTATCACGATACCGACGATGGGCGATGAAGAGNAAACGGGAAAGTAAAACACGCGGAAAGAGGGAAACAACTAACCATACCAAATCAATATTCATGCAAAATTTTAACCATGCTACACGGCACTACTTACAAATTAGACGCANCATCNGTCCCCGTCNATCTTCATCGCGCTTCGATGCGCAGCTCGCAGCCAACAGAGGCACACAGCAAATCTAACGATANCACNNGCAGCTAACATNTCAACCCAGTCTACACAACGACGCAGCTATACAACCCTCTCATATCTATCTCTCTACANTACTACGCCAAACATTACGGTCTACGACGCCGCACTACCGAAGCTACGCTGCAACCTGGGCTAGANTGGCCTCTACNCTACTCTACGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4606#0 AGGCAAGAATCGCGCACGAGGGAATCAAATCACGGGGGGACTCCTTTACCTAAAACTTAT 60
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 CACGATACCGACGATGGGCGATGAAGAGAAACGGGAAAGTAAAACACGCGGAAAGAGGGA 120
consensus_4606#1 ------------------------------------------------------------
consensus_4606#0 AACAACTAACCATACCAAATCAATATTATGCAAAATTTTAACCATGTAAGGATATTAAAA 180
consensus_4606#1 ---------------------------------------------GCAAGAATC-----G 10
* *** **
consensus_4606#0 TTAGAGAAATTGTTTTGTTTATTTCATCGGTTCGATGCGCAGTCGCAGCAAAGAGGCAAA 240
consensus_4606#1 CCCGAGGTGCTGATCC-TCAGCTATGTATGCTGGTTTTCTGGCCTCGGGTCAG---TGAA 66
*** ** * * * * * * * * * * * * ** **
consensus_4606#0 GCAAATCTAACGATAGAAGAGTAAATTCAACCCA-GTCTAGAAACGACGAGTATACAACC 299
consensus_4606#1 ACGATTCT-----TCGTGAACTGGTTTGAATGCGTATATCAAAGCGTTTTAAATGTAATT 121
* * *** * * * * ** ** * * * ** ** ** **
consensus_4606#0 TTCATTCTATTTTACATATAGCAACATTACGTTTACGACGCGACTACCGAAGTACGTGCA 359
consensus_4606#1 GTAATTTGTTCGGATGTGTTCGAAAATAAAAGATACATTTTGTT---CTAAATATGTTTC 178
* *** * * * * ** ** * *** * * ** ** **
consensus_4606#0 ACTGGGTAGAATGGCTTAGTATCTAGCACGAGGTAATTACCATTAATCGGCTGATTGATT 419
consensus_4606#1 ACCTGGTCAACCAGCTCG--ATCTGGTACACGATGGACAGTATTTTTGAACCATATGAGC 236
** *** * *** **** * ** * * * *** * * ***
consensus_4606#0 TGATCCTCATACAGGCTGAAACTGAAATGTGTCGTTTAATCTGTCTAGAAGGAAGCTAGC 479
consensus_4606#1 -GAACCTC-TACGG---GGAGCTGGATAGTGGAATGCAACACGAATCAAAA--------T 283
** **** *** * * * *** * *** * ** * * **
consensus_4606#0 CACTTTGAAGTGAACGCATTAAAGCAGTGCATTAACTAACTCATTCGATTGTAATTTTAG 539
consensus_4606#1 CACT--GGGGTGGACTCCTTTACCTAA------AACTTA-TCA--CGATACCGACGATGG 332
**** * *** ** * ** * * **** * *** **** * * *
consensus_4606#0 TGCATGGGGAGCAG-TGTGCAAGTAGCGCATTATCGAGCATTGATTGAGTTTNNGGTTGC 598
consensus_4606#1 GCGATGAAGAGNAAACGGGAAAGTAAAACACGCGGAAAGAGGGAAACAACTAACCATACC 392
*** *** * * * ***** ** * * ** * * * *
consensus_4606#0 GTTTTGCGAGCCGTTTGCATATGCCTAGCC-TAAGGAAGGAAACCACTCAACAGGCAANA 657
consensus_4606#1 AAATCAATATTCA--TGCAAAATTTTAACCATGCTACACGGCACTACTTA-CAAATTAGA 449
* * * **** * ** ** * * * ** *** * ** * *
consensus_4606#0 CGAGACAAACCCATTACGAACAACATTAGCGTGTTTTAATGCCAAACGGTGCAAAATTCG 717
consensus_4606#1 CGCANCAT-CNGTCCCCGTCNATCTTCATCGCGCTTCGATGCGCAGCTCGCAGCCAACAG 508
** ** * ** * * * * ** * ** **** * * * *
consensus_4606#0 TGGTAGCCTTNTGATTTCGTAGAACTGGTTTAAAAGACCGTTCCCAGTNGACTGGTATAG 777
consensus_4606#1 AGGCACACAGCAAATCTAACGATANCACNNGCAGCTAACATNTCAACCCAGTCTACACAA 568
** * * ** * * * * * * * * * *
consensus_4606#0 GCNCTTGAAGAAGAAAACCGATTGGACANACCAAATTTTACCTTAACACACTNAGGTACC 837
consensus_4606#1 CGACGCAGCTATACAACCCTCTCATATCTATC--TCTCTACANTACTACGCCAAA-CATT 625
* * ** ** * * * * * *** ** ** * * *
consensus_4606#0 ACCACCTTAGGCTACCTAANGTTNAAACAAATTCAGGAATTCAAGGGANANAATTACATT 897
consensus_4606#1 ACGGTCTACGACGCCGCACTACCGAAGCTACGCTGCAACCT---GGGCTAGANTGGCCTC 682
** ** * * * * ** * * * * *** * * * * *
consensus_4606#0 AATTCCCCCCATTAATTTGACAACAACACAACACACACACAGGCTTTTTTCGGC 951
consensus_4606#1 TACNCTACTCTACGC--------------------------------------- 697
* * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||