These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4618#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1082 fasta sequence [CGAGATAAAACTCACCAAAAAAACCCCGACAGAACGACGCACAAAGGTGAAGCAATGTGAGACAAAACCTGGCGAAGGCGCCTTAGGGAAAGAACGAGAAAGGATATATATTTTTTATATCGATTGAAAGTAATGTTAAAGGAAAGGGCAATAACACTGCACAGCAAAGTCCAGCTCGAGACCCACAATATTAGGGCGTAGAATGGAGTGTTTAGAGTGCACGGTAATCTTATTTTTTATACACAAAAACATTCCCCCCCCCCCAGCTCTCCCCCAATGGCAGGCGAGTACCGTATTCGGGTCGCTTGCGTGATCTCCTCGAATCGAACGACAAAACACGGTGGTTTCATAAGAACGGTGGAAAACAGAATTAGAAAACACAACAGAAGGAATTAAGGCCGATAATTGAAGATATGAAAAAGACTCAAACATACACCCTAAAAGAAAACAAGCTGTAGGAGTACAGAGCGAAGAGCGGGGAAATACAGAAATGTGGATTTAATTCCATTTTTGTAGCTTTTCCCCCTTTATCGCCATCATCTGTATTCTAACAGCTCCAATGTANATTAAGCAGACGTTTTATTTTATTTTTTAATCACAATTCGCTTGTTCCGCTAACCATCCGCTGTATTATAGTGTGCCGGTGACATGTTTATCCCAAACAAATCACGCTTATTTAGCCACGNGTGTGCCNTTCCAATATTTACAACAAAGCTTATACTTACACGCATTCCAATTCTCTTCCTCGATCGATCGATCAGTCGACGATCGGGACTTTTGTCCAGCGCCAAACCCCCCTTTTGAATATATGCTTGTGAACAATCACCGTTTTCAACTGTAATTCGTAAGTGTTCCTCCCGCGCTACAGTATTCATTCAGTATTTAATCGTCGTTCATGTAATCCAAACAACATTTTCCACAACGTATTCATTCCCTATCTGTCTGTCTGTTTGTCTGTCTTTCGTCTATCTAGCTACGCATTTTGGGCCATTTCGTTTCCCATTCCTTACCTTGTCGTTTTAGAAGTAAACATTGAAACAGTTTTTATATGGTTAAAAAAAACNAACGATTGAATTTCAAAA] [+] EMBL BX625571 [CGAGATAAAACTCACCAAAAAAACCCCGACAGAACGACGCACAAAGGTGAAGCAATGTGAGACAAAACCTGGCGAAGGCGCCTTAGGGAAAGAACGAGAAAGGATATATATTTTTTATATCGATTGAAAGTAATGTTAAAGGAAAGGGCAATAACACTGCACAGCAAAGTCCAGCTCGAGACCCACAATATTAGGGCGTAGAATGGAGTGTTTAGAGTGCACGGTAATCTTATTTTTTATACACAAAAACATTCCCCCCCCCCCAGCTCTCCCCCAATGGCAGGCGAGTACCGTATTCGGGTCGCTTGCGTGATCTCCTCGAATCGAACGACAAAACACGGTGGTTTCATAAGAACGGTGGAAAACAGAATTAGAAAACACAACAGAAGGAATTAAGGCCGATAATTGAAGATATGAAAAAGACTCAAACATACACCCTAAAAGAAAACAAGCTGTAGGAGTACAGAGCGAAGAGCGGGGAAATACAGAAATGTGGATTTAATTCCATTTTTGTAGCTTTTCCCCCTTTATCGCCATCATCTGTATTCTAACAGCTCCAATGTANATTAAGCAGACGTTTTATTTTATTTTTTAATCACAATTCGCTTGTTCCGCTAACCATCCGCTGTATTATAGTGTGCCGGTGACATGTTTATCCCAAACAAATCACGCTTATTTAGCCACGNGTGTGCCNTTCCAATATTTACAACAAAGCTTA ] [+] EMBL BX620907 [ AACGGTGGAAAACAGAATTAGAAAACACAACAGAAGGAATTAAGGCCGATAATTGAAGATATGAAAAAGACTCAAACATACACCCTAAAAGAAAACAAGCTGTAGGAGTACAGAGCGAAGAGCGGGGAAATACAGAAATGTGGATTTAATTCCATTTTTGTAGCTTTTCCCCCTTTATCGCCATCATCTGTATTCTAACAGCTCCAATGTAGATTAAGCAGACGTTTTATTTTATTTTTTAATCACAATTCGCTTGTTCCGCTAACCATCCGCTGTATTATAGTGTGCCGGTGACATGTTTATCCCAAACAAATCACGCTTATTTAGCCACGTGTGTG CATTCCAATATTTACAACAAAGCTTATACTTACACGCATTCCAATTCTCTTCCTCGATCGATCGATCAGTCGACGATCGGGACTTTTGTCCAGCGCCAAACCCCCCTTTTGAATATATGCTTGTGAACAATCACCGTTTTCAACTGTAATTCGTAAGTGTTCCTCCCGCGCTACAGTATTCATTCAGTATTTAATCGTCGTTCATGTAATCCAAACAACATTTTCCACAACGTATTCATTCCCTATCTGTCTGTCTGTTTGTCTGTCTTTCGTCTATCTAGCTACGCATTTTGGGCCATTTCGTTTCCCATTCCTTACCTTGTCGTTTTAGAAGTAAACATTGAAACAGTTTTTATATGGTTAAAAAAAACNAACGATTGAATTTCAAAA] consensusID : consensus_4618#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence [TAGCAGAATTCCCCGAGGCTTTTAACACACACGTAAACACAGCTTTACCTCTGTAAGAGCAAGACAAAACAAGACAAACATAATCTACATTCCAGTGTGATAACCTTAGAGCGAGAGAGCAGCGGGCAGTAAGAATATGTGTTACAACAATAATTGCGAGATAAAACTCACCAAAAAAACCCCGACAGAACGACGCACAAAGGTGAAGCAATGTGAGACAAAACCTGGCGAAAGGCGCCTTAGGGAAAGAACGAGAAAGGATATATATTTTTCATATCGATTGACCAGTAACTGTTCANACAGGAACAGGGCAATAACACTGCACAGCAAAGTCCAGCTCGAGACCCACAATATAAGGGCGTAGCAATGGAGTGTTTAGAGTGCACGGGTAACTCTTATTTNTTATATACAAAAAACATTCCCCCAACCCCCGGCTCCTCCCCAATGGCAGGCGAGTACCGTATTCGGGTCGCTTGCGTGATCTCCTCGAATCGAACGACAAAACACGGCTGGCTTTCACTAAGCAACGGTGGAAAACAGCAANTTNGCACACCAACACAACAGACAGGAACTTCAACTGCCGATAACTTGAACGCATATGAACNAGACTCAAACTTACACCCTAAAAGAAAACAAGCTGTAGGAGTATAGAGCGAAGAGCGGGGAAATACAGAAATGTGGATTTAATTCCATTCGGTAGCTTANAACCCCCTTCATCGCCATCATCTGTATTCTAACAGCTCCAATGTACGATTAAGCACGACGTCTTATTTACTATAATNTAANTCACAATATCGACTTGTACC] [+] EMBL AL932986 [TAGCAGAATTCCCCGAGGCTTTTAACACACACGTAAACACAGCTTTACCTCTGTAAGAGCAAGACAAAACAAGACAAACATAATCTACATTCCAGTGTGATAACCTTAGAGCGAGAGAGCAGCGGGCAGTAAGAATATGTGTTACAACAATAATTGCGAGATAAAACTCACCAAAAAAACCCCGACAGAACGACGCACAAAGGTGAAGCAATGTGAGACAAAACCTGGCGAAAGGCGCCTTAGGGAAAGAACGAGAAAGGATATATATTTTTCATATCGATTGACCAGTAACTGTTCANACAGGAACAGGGCAATAACACTGCACAGCAAAGTCCAGCTCGAGACCCACAATATAAGGGCGTAGCAATGGAGTGTTTAGAGTGCACGGGTAACTCTTATTTNTTATATACAAAAAACATTCCCCCAACCCCCGGCTCCTCCCCAATGGCAGGCGAGTACCGTATTCGGGTCGCTTGCGTGATCTCCTCGAATCGAACGACAAAACACGGCTGGCTTTCACTAAGCAACGGTGGAAAACAGCAANTTNGCACACCAACACAACAGACAGGAACTTCAACTGCCGATAACTTGAACGCATATGAACNAGACTCAAACTTACACCCTAAAAGAAAACAAGCTGTAGGAGTATAGAGCGAAGAGCGGGGAAATACAGAAATGTGGATTTAATTCCATTCGGTAGCTTANAACCCCCTTCATCGCCATCATCTGTATTCTAACAGCTCCAATGTACGATTAAGCACGACGTCTTATTTACTATAATNTAANTCACAATATCGACTTGTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4618#0 ------------------------------------------------------------ consensus_4618#1 TAGCAGAATTCCCCGAGGCTTTTAACACACACGTAAACACAGCTTTACCTCTGTAAGAGC 60 consensus_4618#0 ------------------------------------------------------------ consensus_4618#1 AAGACAAAACAAGACAAACATAATCTACATTCCAGTGTGATAACCTTAGAGCGAGAGAGC 120 consensus_4618#0 ------------------------------------CGAGATAAAACTCACCAAAAAAAC 24 consensus_4618#1 AGCGGGCAGTAAGAATATGTGTTACAACAATAATTGCGAGATAAAACTCACCAAAAAAAC 180 ************************ consensus_4618#0 CCCGACAGAACGACGCACAAAGGTGAAGCAATGTGAGACAAAACCTGGCGAA-GGCGCCT 83 consensus_4618#1 CCCGACAGAACGACGCACAAAGGTGAAGCAATGTGAGACAAAACCTGGCGAAAGGCGCCT 240 **************************************************** ******* consensus_4618#0 TAGGGAAAGAACGAGAAAGGATATATATTTTTTATATCGATTGAA-AGTAA-TGTTAAA- 140 consensus_4618#1 TAGGGAAAGAACGAGAAAGGATATATATTTTTCATATCGATTGACCAGTAACTGTTCANA 300 ******************************** *********** ***** **** * consensus_4618#0 ---GGAAAGGGCAATAACACTGCACAGCAAAGTCCAGCTCGAGACCCACAATATTAGGGC 197 consensus_4618#1 CAGGAACAGGGCAATAACACTGCACAGCAAAGTCCAGCTCGAGACCCACAATATAAGGGC 360 * * *********************************************** ***** consensus_4618#0 GTAG-AATGGAGTGTTTAGAGTGCACGG-TAA-TCTTATTTTTTATACACAAAAA-CATT 253 consensus_4618#1 GTAGCAATGGAGTGTTTAGAGTGCACGGGTAACTCTTATTTNTTATATACAAAAAACATT 420 **** *********************** *** ******** ***** ******* **** consensus_4618#0 CCCCCC-CCCCCAGCTCTCCCCCAATGGCAGGCGAGTACCGTATTCGGGTCGCTTGCGTG 312 consensus_4618#1 CCCCCAACCCCCGGCTCCTCCCCAATGGCAGGCGAGTACCGTATTCGGGTCGCTTGCGTG 480 ***** ***** **** ***************************************** consensus_4618#0 ATCTCCTCGAATCGAACGACAAAACACGGTGG--TTTCA-TAAG-AACGGTGGAAAACAG 368 consensus_4618#1 ATCTCCTCGAATCGAACGACAAAACACGGCTGGCTTTCACTAAGCAACGGTGGAAAACAG 540 ***************************** * ***** **** *************** consensus_4618#0 --AATTAGAA----AACACAACAGA-AGGAATT---AAGGCCGATAATTGAAG---ATAT 415 consensus_4618#1 CAANTTNGCACACCAACACAACAGACAGGAACTTCAACTGCCGATAACTTGAACGCATAT 600 * ** * * *********** ***** * * ******** * * **** consensus_4618#0 GAAAAAGACTCAAACATACACCCTAAAAGAAAACAAGCTGTAGGAGTACAGAGCGAAGAG 475 consensus_4618#1 GAACNAGACTCAAACTTACACCCTAAAAGAAAACAAGCTGTAGGAGTATAGAGCGAAGAG 660 *** ********** ******************************** *********** consensus_4618#0 CGGGGAAATACAGAAATGTGGATTTAATTCCATTTTTGTAGCTTTT--CCCCCTTTATCG 533 consensus_4618#1 CGGGGAAATACAGAAATGTGGATTTAATTCCATTCG-GTAGCTTANAACCCCCTTCATCG 719 ********************************** ******* ******* **** consensus_4618#0 CCATCATCTGTATTCTAACAGCTCCAATGTAN-ATTAAGCA-GACGTTTTATTT--TATT 589 consensus_4618#1 CCATCATCTGTATTCTAACAGCTCCAATGTACGATTAAGCACGACGTCTTATTTACTATA 779 ******************************* ******** ***** ****** *** consensus_4618#0 TTTTAAT-CACAAT-TCG-CTTGTTCCGCTAACCATCCGCTGTATTATAGTGTGCCGGTG 646 consensus_4618#1 ATNTAANTCACAATATCGACTTGTACC--------------------------------- 806 * *** ****** *** ***** ** consensus_4618#0 ACATGTTTATCCCAAACAAATCACGCTTATTTAGCCACGNGTGTGCCNTTCCAATATTTA 706 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 CAACAAAGCTTATACTTACACGCATTCCAATTCTCTTCCTCGATCGATCGATCAGTCGAC 766 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 GATCGGGACTTTTGTCCAGCGCCAAACCCCCCTTTTGAATATATGCTTGTGAACAATCAC 826 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 CGTTTTCAACTGTAATTCGTAAGTGTTCCTCCCGCGCTACAGTATTCATTCAGTATTTAA 886 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 TCGTCGTTCATGTAATCCAAACAACATTTTCCACAACGTATTCATTCCCTATCTGTCTGT 946 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 CTGTTTGTCTGTCTTTCGTCTATCTAGCTACGCATTTTGGGCCATTTCGTTTCCCATTCC 1006 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 TTACCTTGTCGTTTTAGAAGTAAACATTGAAACAGTTTTTATATGGTTAAAAAAAACNAA 1066 consensus_4618#1 ------------------------------------------------------------ consensus_4618#0 CGATTGAATTTCAAAA 1082 consensus_4618#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||