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Anopheles gambiae
cluster # 4618 cluster # 4618       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4618#0 length = 1082 sequences # 2  
consensus_4618#1 length = 806 sequences # 1  

consensusID : consensus_4618#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1082
fasta sequence
                              [CGAGATAAAACTCACCAAAAAAACCCCGACAGAACGACGCACAAAGGTGAAGCAATGTGAGACAAAACCTGGCGAAGGCGCCTTAGGGAAAGAACGAGAAAGGATATATATTTTTTATATCGATTGAAAGTAATGTTAAAGGAAAGGGCAATAACACTGCACAGCAAAGTCCAGCTCGAGACCCACAATATTAGGGCGTAGAATGGAGTGTTTAGAGTGCACGGTAATCTTATTTTTTATACACAAAAACATTCCCCCCCCCCCAGCTCTCCCCCAATGGCAGGCGAGTACCGTATTCGGGTCGCTTGCGTGATCTCCTCGAATCGAACGACAAAACACGGTGGTTTCATAAGAACGGTGGAAAACAGAATTAGAAAACACAACAGAAGGAATTAAGGCCGATAATTGAAGATATGAAAAAGACTCAAACATACACCCTAAAAGAAAACAAGCTGTAGGAGTACAGAGCGAAGAGCGGGGAAATACAGAAATGTGGATTTAATTCCATTTTTGTAGCTTTTCCCCCTTTATCGCCATCATCTGTATTCTAACAGCTCCAATGTANATTAAGCAGACGTTTTATTTTATTTTTTAATCACAATTCGCTTGTTCCGCTAACCATCCGCTGTATTATAGTGTGCCGGTGACATGTTTATCCCAAACAAATCACGCTTATTTAGCCACGNGTGTGCCNTTCCAATATTTACAACAAAGCTTATACTTACACGCATTCCAATTCTCTTCCTCGATCGATCGATCAGTCGACGATCGGGACTTTTGTCCAGCGCCAAACCCCCCTTTTGAATATATGCTTGTGAACAATCACCGTTTTCAACTGTAATTCGTAAGTGTTCCTCCCGCGCTACAGTATTCATTCAGTATTTAATCGTCGTTCATGTAATCCAAACAACATTTTCCACAACGTATTCATTCCCTATCTGTCTGTCTGTTTGTCTGTCTTTCGTCTATCTAGCTACGCATTTTGGGCCATTTCGTTTCCCATTCCTTACCTTGTCGTTTTAGAAGTAAACATTGAAACAGTTTTTATATGGTTAAAAAAAACNAACGATTGAATTTCAAAA]

[+] EMBL BX625571             [CGAGATAAAACTCACCAAAAAAACCCCGACAGAACGACGCACAAAGGTGAAGCAATGTGAGACAAAACCTGGCGAAGGCGCCTTAGGGAAAGAACGAGAAAGGATATATATTTTTTATATCGATTGAAAGTAATGTTAAAGGAAAGGGCAATAACACTGCACAGCAAAGTCCAGCTCGAGACCCACAATATTAGGGCGTAGAATGGAGTGTTTAGAGTGCACGGTAATCTTATTTTTTATACACAAAAACATTCCCCCCCCCCCAGCTCTCCCCCAATGGCAGGCGAGTACCGTATTCGGGTCGCTTGCGTGATCTCCTCGAATCGAACGACAAAACACGGTGGTTTCATAAGAACGGTGGAAAACAGAATTAGAAAACACAACAGAAGGAATTAAGGCCGATAATTGAAGATATGAAAAAGACTCAAACATACACCCTAAAAGAAAACAAGCTGTAGGAGTACAGAGCGAAGAGCGGGGAAATACAGAAATGTGGATTTAATTCCATTTTTGTAGCTTTTCCCCCTTTATCGCCATCATCTGTATTCTAACAGCTCCAATGTANATTAAGCAGACGTTTTATTTTATTTTTTAATCACAATTCGCTTGTTCCGCTAACCATCCGCTGTATTATAGTGTGCCGGTGACATGTTTATCCCAAACAAATCACGCTTATTTAGCCACGNGTGTGCCNTTCCAATATTTACAACAAAGCTTA                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX620907             [                                                                                                                                                                                                                                                                                                                                                                 AACGGTGGAAAACAGAATTAGAAAACACAACAGAAGGAATTAAGGCCGATAATTGAAGATATGAAAAAGACTCAAACATACACCCTAAAAGAAAACAAGCTGTAGGAGTACAGAGCGAAGAGCGGGGAAATACAGAAATGTGGATTTAATTCCATTTTTGTAGCTTTTCCCCCTTTATCGCCATCATCTGTATTCTAACAGCTCCAATGTAGATTAAGCAGACGTTTTATTTTATTTTTTAATCACAATTCGCTTGTTCCGCTAACCATCCGCTGTATTATAGTGTGCCGGTGACATGTTTATCCCAAACAAATCACGCTTATTTAGCCACGTGTGTG CATTCCAATATTTACAACAAAGCTTATACTTACACGCATTCCAATTCTCTTCCTCGATCGATCGATCAGTCGACGATCGGGACTTTTGTCCAGCGCCAAACCCCCCTTTTGAATATATGCTTGTGAACAATCACCGTTTTCAACTGTAATTCGTAAGTGTTCCTCCCGCGCTACAGTATTCATTCAGTATTTAATCGTCGTTCATGTAATCCAAACAACATTTTCCACAACGTATTCATTCCCTATCTGTCTGTCTGTTTGTCTGTCTTTCGTCTATCTAGCTACGCATTTTGGGCCATTTCGTTTCCCATTCCTTACCTTGTCGTTTTAGAAGTAAACATTGAAACAGTTTTTATATGGTTAAAAAAAACNAACGATTGAATTTCAAAA]


>consensus_4618#0 CGAGATAAAACTCACCAAAAAAACCCCGACAGAACGACGCACAAAGGTGAAGCAATGTGA GACAAAACCTGGCGAAGGCGCCTTAGGGAAAGAACGAGAAAGGATATATATTTTTTATAT CGATTGAAAGTAATGTTAAAGGAAAGGGCAATAACACTGCACAGCAAAGTCCAGCTCGAG ACCCACAATATTAGGGCGTAGAATGGAGTGTTTAGAGTGCACGGTAATCTTATTTTTTAT ACACAAAAACATTCCCCCCCCCCCAGCTCTCCCCCAATGGCAGGCGAGTACCGTATTCGG GTCGCTTGCGTGATCTCCTCGAATCGAACGACAAAACACGGTGGTTTCATAAGAACGGTG GAAAACAGAATTAGAAAACACAACAGAAGGAATTAAGGCCGATAATTGAAGATATGAAAA AGACTCAAACATACACCCTAAAAGAAAACAAGCTGTAGGAGTACAGAGCGAAGAGCGGGG AAATACAGAAATGTGGATTTAATTCCATTTTTGTAGCTTTTCCCCCTTTATCGCCATCAT CTGTATTCTAACAGCTCCAATGTANATTAAGCAGACGTTTTATTTTATTTTTTAATCACA ATTCGCTTGTTCCGCTAACCATCCGCTGTATTATAGTGTGCCGGTGACATGTTTATCCCA AACAAATCACGCTTATTTAGCCACGNGTGTGCCNTTCCAATATTTACAACAAAGCTTATA CTTACACGCATTCCAATTCTCTTCCTCGATCGATCGATCAGTCGACGATCGGGACTTTTG TCCAGCGCCAAACCCCCCTTTTGAATATATGCTTGTGAACAATCACCGTTTTCAACTGTA ATTCGTAAGTGTTCCTCCCGCGCTACAGTATTCATTCAGTATTTAATCGTCGTTCATGTA ATCCAAACAACATTTTCCACAACGTATTCATTCCCTATCTGTCTGTCTGTTTGTCTGTCT TTCGTCTATCTAGCTACGCATTTTGGGCCATTTCGTTTCCCATTCCTTACCTTGTCGTTT TAGAAGTAAACATTGAAACAGTTTTTATATGGTTAAAAAAAACNAACGATTGAATTTCAA AA



consensusID : consensus_4618#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 806
fasta sequence
                              [TAGCAGAATTCCCCGAGGCTTTTAACACACACGTAAACACAGCTTTACCTCTGTAAGAGCAAGACAAAACAAGACAAACATAATCTACATTCCAGTGTGATAACCTTAGAGCGAGAGAGCAGCGGGCAGTAAGAATATGTGTTACAACAATAATTGCGAGATAAAACTCACCAAAAAAACCCCGACAGAACGACGCACAAAGGTGAAGCAATGTGAGACAAAACCTGGCGAAAGGCGCCTTAGGGAAAGAACGAGAAAGGATATATATTTTTCATATCGATTGACCAGTAACTGTTCANACAGGAACAGGGCAATAACACTGCACAGCAAAGTCCAGCTCGAGACCCACAATATAAGGGCGTAGCAATGGAGTGTTTAGAGTGCACGGGTAACTCTTATTTNTTATATACAAAAAACATTCCCCCAACCCCCGGCTCCTCCCCAATGGCAGGCGAGTACCGTATTCGGGTCGCTTGCGTGATCTCCTCGAATCGAACGACAAAACACGGCTGGCTTTCACTAAGCAACGGTGGAAAACAGCAANTTNGCACACCAACACAACAGACAGGAACTTCAACTGCCGATAACTTGAACGCATATGAACNAGACTCAAACTTACACCCTAAAAGAAAACAAGCTGTAGGAGTATAGAGCGAAGAGCGGGGAAATACAGAAATGTGGATTTAATTCCATTCGGTAGCTTANAACCCCCTTCATCGCCATCATCTGTATTCTAACAGCTCCAATGTACGATTAAGCACGACGTCTTATTTACTATAATNTAANTCACAATATCGACTTGTACC]

[+] EMBL AL932986             [TAGCAGAATTCCCCGAGGCTTTTAACACACACGTAAACACAGCTTTACCTCTGTAAGAGCAAGACAAAACAAGACAAACATAATCTACATTCCAGTGTGATAACCTTAGAGCGAGAGAGCAGCGGGCAGTAAGAATATGTGTTACAACAATAATTGCGAGATAAAACTCACCAAAAAAACCCCGACAGAACGACGCACAAAGGTGAAGCAATGTGAGACAAAACCTGGCGAAAGGCGCCTTAGGGAAAGAACGAGAAAGGATATATATTTTTCATATCGATTGACCAGTAACTGTTCANACAGGAACAGGGCAATAACACTGCACAGCAAAGTCCAGCTCGAGACCCACAATATAAGGGCGTAGCAATGGAGTGTTTAGAGTGCACGGGTAACTCTTATTTNTTATATACAAAAAACATTCCCCCAACCCCCGGCTCCTCCCCAATGGCAGGCGAGTACCGTATTCGGGTCGCTTGCGTGATCTCCTCGAATCGAACGACAAAACACGGCTGGCTTTCACTAAGCAACGGTGGAAAACAGCAANTTNGCACACCAACACAACAGACAGGAACTTCAACTGCCGATAACTTGAACGCATATGAACNAGACTCAAACTTACACCCTAAAAGAAAACAAGCTGTAGGAGTATAGAGCGAAGAGCGGGGAAATACAGAAATGTGGATTTAATTCCATTCGGTAGCTTANAACCCCCTTCATCGCCATCATCTGTATTCTAACAGCTCCAATGTACGATTAAGCACGACGTCTTATTTACTATAATNTAANTCACAATATCGACTTGTACC]


>consensus_4618#1 TAGCAGAATTCCCCGAGGCTTTTAACACACACGTAAACACAGCTTTACCTCTGTAAGAGC AAGACAAAACAAGACAAACATAATCTACATTCCAGTGTGATAACCTTAGAGCGAGAGAGC AGCGGGCAGTAAGAATATGTGTTACAACAATAATTGCGAGATAAAACTCACCAAAAAAAC CCCGACAGAACGACGCACAAAGGTGAAGCAATGTGAGACAAAACCTGGCGAAAGGCGCCT TAGGGAAAGAACGAGAAAGGATATATATTTTTCATATCGATTGACCAGTAACTGTTCANA CAGGAACAGGGCAATAACACTGCACAGCAAAGTCCAGCTCGAGACCCACAATATAAGGGC GTAGCAATGGAGTGTTTAGAGTGCACGGGTAACTCTTATTTNTTATATACAAAAAACATT CCCCCAACCCCCGGCTCCTCCCCAATGGCAGGCGAGTACCGTATTCGGGTCGCTTGCGTG ATCTCCTCGAATCGAACGACAAAACACGGCTGGCTTTCACTAAGCAACGGTGGAAAACAG CAANTTNGCACACCAACACAACAGACAGGAACTTCAACTGCCGATAACTTGAACGCATAT GAACNAGACTCAAACTTACACCCTAAAAGAAAACAAGCTGTAGGAGTATAGAGCGAAGAG CGGGGAAATACAGAAATGTGGATTTAATTCCATTCGGTAGCTTANAACCCCCTTCATCGC CATCATCTGTATTCTAACAGCTCCAATGTACGATTAAGCACGACGTCTTATTTACTATAA TNTAANTCACAATATCGACTTGTACC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4618#0      ------------------------------------------------------------
consensus_4618#1      TAGCAGAATTCCCCGAGGCTTTTAACACACACGTAAACACAGCTTTACCTCTGTAAGAGC 60
                                                                                  

consensus_4618#0      ------------------------------------------------------------
consensus_4618#1      AAGACAAAACAAGACAAACATAATCTACATTCCAGTGTGATAACCTTAGAGCGAGAGAGC 120
                                                                                  

consensus_4618#0      ------------------------------------CGAGATAAAACTCACCAAAAAAAC 24
consensus_4618#1      AGCGGGCAGTAAGAATATGTGTTACAACAATAATTGCGAGATAAAACTCACCAAAAAAAC 180
                                                          ************************

consensus_4618#0      CCCGACAGAACGACGCACAAAGGTGAAGCAATGTGAGACAAAACCTGGCGAA-GGCGCCT 83
consensus_4618#1      CCCGACAGAACGACGCACAAAGGTGAAGCAATGTGAGACAAAACCTGGCGAAAGGCGCCT 240
                      **************************************************** *******

consensus_4618#0      TAGGGAAAGAACGAGAAAGGATATATATTTTTTATATCGATTGAA-AGTAA-TGTTAAA- 140
consensus_4618#1      TAGGGAAAGAACGAGAAAGGATATATATTTTTCATATCGATTGACCAGTAACTGTTCANA 300
                      ******************************** ***********  ***** **** *  

consensus_4618#0      ---GGAAAGGGCAATAACACTGCACAGCAAAGTCCAGCTCGAGACCCACAATATTAGGGC 197
consensus_4618#1      CAGGAACAGGGCAATAACACTGCACAGCAAAGTCCAGCTCGAGACCCACAATATAAGGGC 360
                         * * *********************************************** *****

consensus_4618#0      GTAG-AATGGAGTGTTTAGAGTGCACGG-TAA-TCTTATTTTTTATACACAAAAA-CATT 253
consensus_4618#1      GTAGCAATGGAGTGTTTAGAGTGCACGGGTAACTCTTATTTNTTATATACAAAAAACATT 420
                      **** *********************** *** ******** ***** ******* ****

consensus_4618#0      CCCCCC-CCCCCAGCTCTCCCCCAATGGCAGGCGAGTACCGTATTCGGGTCGCTTGCGTG 312
consensus_4618#1      CCCCCAACCCCCGGCTCCTCCCCAATGGCAGGCGAGTACCGTATTCGGGTCGCTTGCGTG 480
                      *****  ***** ****  *****************************************

consensus_4618#0      ATCTCCTCGAATCGAACGACAAAACACGGTGG--TTTCA-TAAG-AACGGTGGAAAACAG 368
consensus_4618#1      ATCTCCTCGAATCGAACGACAAAACACGGCTGGCTTTCACTAAGCAACGGTGGAAAACAG 540
                      *****************************  *  ***** **** ***************

consensus_4618#0      --AATTAGAA----AACACAACAGA-AGGAATT---AAGGCCGATAATTGAAG---ATAT 415
consensus_4618#1      CAANTTNGCACACCAACACAACAGACAGGAACTTCAACTGCCGATAACTTGAACGCATAT 600
                        * ** * *    *********** ***** *   *  ******** *  *    ****

consensus_4618#0      GAAAAAGACTCAAACATACACCCTAAAAGAAAACAAGCTGTAGGAGTACAGAGCGAAGAG 475
consensus_4618#1      GAACNAGACTCAAACTTACACCCTAAAAGAAAACAAGCTGTAGGAGTATAGAGCGAAGAG 660
                      ***  ********** ******************************** ***********

consensus_4618#0      CGGGGAAATACAGAAATGTGGATTTAATTCCATTTTTGTAGCTTTT--CCCCCTTTATCG 533
consensus_4618#1      CGGGGAAATACAGAAATGTGGATTTAATTCCATTCG-GTAGCTTANAACCCCCTTCATCG 719
                      **********************************   *******    ******* ****

consensus_4618#0      CCATCATCTGTATTCTAACAGCTCCAATGTAN-ATTAAGCA-GACGTTTTATTT--TATT 589
consensus_4618#1      CCATCATCTGTATTCTAACAGCTCCAATGTACGATTAAGCACGACGTCTTATTTACTATA 779
                      *******************************  ******** ***** ******  *** 

consensus_4618#0      TTTTAAT-CACAAT-TCG-CTTGTTCCGCTAACCATCCGCTGTATTATAGTGTGCCGGTG 646
consensus_4618#1      ATNTAANTCACAATATCGACTTGTACC--------------------------------- 806
                       * ***  ****** *** ***** **                                 

consensus_4618#0      ACATGTTTATCCCAAACAAATCACGCTTATTTAGCCACGNGTGTGCCNTTCCAATATTTA 706
consensus_4618#1      ------------------------------------------------------------
                                                                                  

consensus_4618#0      CAACAAAGCTTATACTTACACGCATTCCAATTCTCTTCCTCGATCGATCGATCAGTCGAC 766
consensus_4618#1      ------------------------------------------------------------
                                                                                  

consensus_4618#0      GATCGGGACTTTTGTCCAGCGCCAAACCCCCCTTTTGAATATATGCTTGTGAACAATCAC 826
consensus_4618#1      ------------------------------------------------------------
                                                                                  

consensus_4618#0      CGTTTTCAACTGTAATTCGTAAGTGTTCCTCCCGCGCTACAGTATTCATTCAGTATTTAA 886
consensus_4618#1      ------------------------------------------------------------
                                                                                  

consensus_4618#0      TCGTCGTTCATGTAATCCAAACAACATTTTCCACAACGTATTCATTCCCTATCTGTCTGT 946
consensus_4618#1      ------------------------------------------------------------
                                                                                  

consensus_4618#0      CTGTTTGTCTGTCTTTCGTCTATCTAGCTACGCATTTTGGGCCATTTCGTTTCCCATTCC 1006
consensus_4618#1      ------------------------------------------------------------
                                                                                  

consensus_4618#0      TTACCTTGTCGTTTTAGAAGTAAACATTGAAACAGTTTTTATATGGTTAAAAAAAACNAA 1066
consensus_4618#1      ------------------------------------------------------------
                                                                                  

consensus_4618#0      CGATTGAATTTCAAAA 1082
consensus_4618#1      ----------------
                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)