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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4623#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 887 fasta sequence
[TGCAGATNGGCCCGTTATACGTAGAGACACGAATGACCTCAACCATCATAACGATCATCGTTCATATTGGAAACAGACAGGAGGATGAAGAAGATCATNTCGATAGTGGATTTTCTTTTGTTGTGTTCGAACACCACCACCACCACCAGCACCACCTCCGCCACCAACCTTAACCACCAGACCACTAGTCCTTTACATTTTTAAAGCTGCTACCAGTATAGATACAAACATGATATCTNTTTTTATTNACGTCCTAATTGCAGCACTCTATACAATCATTTATTTNNCTTGTNTTCGTCTCACAACGGCTCCGAGAACTTTCTTAACGCTGAGGACAATTAATCTGTGATAACTTGTGGCAACATAGCTAGGAAACTGTCCGGGCTGGGTGCAACAAGTTACCACTCCCACGAAATGGGNCAGCACAATACGGATAAACACATGGTGCCCCGGGTGACGCTGGAGAGCACCAGCAGAGCNGCTGTATGCAGCAGACAGCAGAGAGCGCTGCAGCAGCAACNGNGGAGAGGACGANGGGCAGAGGGNGCAGNAGACGGAGAAGGAAGACAAACCAGTTGCNTTCGAAAANACGGGAAACCGCATCTCTNTCTACANCTCAAGTTGTTGGGTATGCTGTCANCACATTCAGGCGCNACCCGAACNAGTACAGAGGGNAAATAAAGAACNANATTNGTTAAATCGNGGACAAGTGGTATTAATTTCCCACTAACAGCAACNACGTAAGTTGCACGCCATNTTTGGGGTCGGGNCNNAAACTATAACGCGAGCAGGNACCATCATTGTTGTTTCGAAACNCAGTNGATTACGACAANGNTCCNGNACCGGCCCACAACAGGAAACCCNAGGCGACCCCCCAGCGCCAGGGG]
[+] EMBL AL934625 [TGCAGATNGGCCCGTTATACGTAGAGACACGAATGACCTCAACCATCATAACGATCATCGTTCATATTGGAAACAGACAGGAGGATGAAGAAGATCATNTCGATAGTGGATTTTCTTTTGTTGTGTTCGAACACCACCACCACCACCAGCACCACCTCCGCCACCAACCTTAACCACCAGACCACTAGTCCTTTACATTTTTAAAGCTGCTACCAGTATAGATACAAACATGATATCTNTTTTTATTNACGTCCTAATTGCAGCACTCTATACAATCATTTATTTNNCTTGTNTTCGTCTCACAACGGCTCCGAGAACTTTCTTAACGCTGAGGACAATTAATCTGTGATAACTTGTGGCAACATAGCTAGGAAACTGTCCGGGCTGGGTGCAACAAGTTACCACTCCCACGAAATGGGNCAGCACAATACGGATAAACACATGGTGCCCCGGGTGACGCTGGAGAGCACCAGCAGAGCNGCTGTATGCAGCAGACAGCAGAGAGCGCTGCAGCAGCAACNGNGGAGAGGACGANGGGCAGAGGGNGCAGNAGACGGAGAAGGAAGACAAACCAGTTGCNTTCGAAAANACGGGAAACCGCATCTCTNTCTACANCTCAAGTTGTTGGGTATGCTGTCANCACATTCAGGCGCNACCCGAACNAGTACAGAGGGNAAATAAAGAACNANATTNGTTAAATCGNGGACAAGTGGTATTAATTTCCCACTAACAGCAACNACGTAAGTTGCACGCCATNTTTGGGGTCGGGNCNNAAACTATAACGCGAGCAGGNACCATCATTGTTGTTTCGAAACNCAGTNGATTACGACAANGNTCCNGNACCGGCCCACAACAGGAAACCCNAGGCGACCCCCCAGCGCCAGGGG]
consensusID : consensus_4623#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 718 fasta sequence
[TAAAGTGAATACAGTTCGTGAAAGTGCAAAATGCTGAACCAAGTACGGAAAGCAAGGACAATTTGATTAATCTTGACAGGTCTGGGTTTTCCCTCAGTGAGGAATAAGAGATTACACAAACTGCATACAATTCTTATACGATCGTAGATTTTTCCAAAACTGTAACTACGACCATGATTTGTTCGTACGTTTACTTAAGACGTAGAGACACCGAATGACCTCAACCATCATAACGATCATCGTTCATATTGGAAACAGACAGGAGGATGAAGAAGATCATTCGATAGGGATTTTTTTGTTGTGTTCGAACACCACCACCACCACCAGCACCACCTCCGCCACCAACCTTAACCACCAGCACCACCTAGTCCTTTACATTTTTAAAGCGCTCCAGTTAGATCAAACATGATTTTTTTTATTAACGTCTAATGCACACTCTTCAATTTTATTTTCTGTATTGTTTAAAGGCTCCGAGAACTTTCTTAACCGAGGACAATTAATCTGTGATACTGTGGAAAATAGTAGGAAATGTCGGGCTGGGTGAAAATTACCACTCCCAAAAATGGGAAGAAATACGGAAAACATGTGCCGTTGCGTGAGAGAAAGAGAGAGTGTATGAGAGAGAGAGAGAGAGCGAGAGAAAGAGAGAGAGAGGGAGAGGGAGAGAGAGAGAGAGAAACAATGTTGAAATGAACCATTTTAAATAGTGTGGTTTGTA]
[+] EMBL BX608442 [TAAAGTGAATACAGTTCGTGAAAGTGCAAAATGCTGAACCAAGTACGGAAAGCAAGGACAATTTGATTAATCTTGACAGGTCTGGGTTTTCCCTCAGTGAGGAATAAGAGATTACACAAACTGCATACAATTCTTATACGATCGTAGATTTTTCCAAAACTGTAACTACGACCATGATTTGTTCGTACGTTTACTTAAGACGTAGAGACACCGAATGACCTCAACCATCATAACGATCATCGTTCATATTGGAAACAGACAGGAGGATGAAGAAGATCATTCGATAGGGATTTTTTTGTTGTGTTCGAACACCACCACCACCACCAGCACCACCTCCGCCACCAACCTTAACCACCAGCACCACCTAGTCCTTTACATTTTTAAAGCGCTCCAGTTAGATCAAACATGATTTTTTTTATTAACGTCTAATGCACACTCTTCAATTTTATTTTCTGTATTGTTTAAAGGCTCCGAGAACTTTCTTAACCGAGGACAATTAATCTGTGATACTGTGGAAAATAGTAGGAAATGTCGGGCTGGGTGAAAATTACCACTCCCAAAAATGGGAAGAAATACGGAAAACATGTGCCGTTGCGTGAGAGAAAGAGAGAGTGTATGAGAGAGAGAGAGAGAGCGAGAGAAAGAGAGAGAGAGGGAGAGGGAGAGAGAGAGAGAGAAACAATGTTGAAATGAACCATTTTAAATAGTGTGGTTTGTA]
[+] EMBL BM592391 [ ccgGTGAAACTGCAAAATGCTGAACCAAGTACGGAAAGCAAGGACAATTTGATTAATCTTGACAGGTCTGGGTTTTCCCTCAGTGAGGAAGAAGAGATTACACAAACTGCATACAATTCTTATACGATCGTAGATTATTCCAAAACTGTAACTACGACCATGATTTGTTCGTACGTTTACTTAAGACGTAGAGACACCGAATGACCTCAACCATCATAACGATCATCGTTCATATTGGTAACAGACAGGAGGATGAAGAAGATCATTCGATAGGGAATTTTTTGTTGTGTTCGAACACCACCACCACCACCAGCACCACCTCCGCCACCAACCTTAACCACCAGCACCACCTAGTCCTTTACATTTTTAAAGCGCTCCAGTTAGATCAAACATGA TTTTTTTATTAACGTCTAATGCACACTCTTCAATTATATTTTCTCTATTGTTTAAAGGCTCCGAGAACTTTCTTAACCGAGGACAATTAATCTGTGATACTGTGGAAAATAGTAGGAAATGTCGGGCTGGGTGAAAATTACCACTCCCAAAAATATGAAGAAACACGGAAAACATGTGCCGTTGCGTGAGAGAAAGAGAGAGTGTATGAGAGAGAGAGAGc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4623#0 ------------------------------------------------------------
consensus_4623#1 TAAAGTGAATACAGTTCGTGAAAGTGCAAAATGCTGAACCAAGTACGGAAAGCAAGGACA 60
consensus_4623#0 ------------------------------------------------------------
consensus_4623#1 ATTTGATTAATCTTGACAGGTCTGGGTTTTCCCTCAGTGAGGAATAAGAGATTACACAAA 120
consensus_4623#0 ------------------------------------------------------------
consensus_4623#1 CTGCATACAATTCTTATACGATCGTAGATTTTTCCAAAACTGTAACTACGACCATGATTT 180
consensus_4623#0 -TGCAGATNGGCCCGTTATACGTAGAGACAC-GAATGACCTCAACCATCATAACGATCAT 58
consensus_4623#1 GTTCGTACGTTTACTTAAGACGTAGAGACACCGAATGACCTCAACCATCATAACGATCAT 240
* * * * * * ************ ****************************
consensus_4623#0 CGTTCATATTGGAAACAGACAGGAGGATGAAGAAGATCATNTCGATAGTGGATTTTCTTT 118
consensus_4623#1 CGTTCATATTGGAAACAGACAGGAGGATGAAGAAGATCATT-CGATAG-GGATTTT--TT 296
**************************************** ****** ******* **
consensus_4623#0 TGTTGTGTTCGAACACCACCACCACCACCAGCACCACCTCCGCCACCAACCTTAACCACC 178
consensus_4623#1 TGTTGTGTTCGAACACCACCACCACCACCAGCACCACCTCCGCCACCAACCTTAACCACC 356
************************************************************
consensus_4623#0 AG-ACCAC-TAGTCCTTTACATTTTTAAAGCTGCTACCAGTATAGATACAAACATGATAT 236
consensus_4623#1 AGCACCACCTAGTCCTTTACATTTTTAAAGC-GCT-CCAGT-TAGAT-CAAACATGAT-- 410
** ***** ********************** *** ***** ***** **********
consensus_4623#0 CTNTTTTTATTNACGTCCTAATTGCAGCACTCTATACAATCATTTATTTNNCTTGTNTTC 296
consensus_4623#1 -TTTTTTTATTAACGTC-TAAT----GCACACTCTTCAAT--TTTATTTTC--TGTATT- 459
* ******** ***** **** **** ** * **** ******* *** **
consensus_4623#0 GTCTCACAACGGCTCCGAGAACTTTCTTAACGCTGAGGACAATTAATCTGTGATAACTTG 356
consensus_4623#1 GTTT---AAAGGCTCCGAGAACTTTCTTAAC--CGAGGACAATTAATCTGTGATA--CTG 512
** * ** ********************* ********************* **
consensus_4623#0 TGGCAACATAGCTAGGAAACTGTCCGGGCTGGGTGCAACAAGTTACCACTCCCACGAAAT 416
consensus_4623#1 TGG-AAAATAG-TAGGAAA-TGTC-GGGCTGGGTGAA---AATTACCACTCCCA-AAAAT 564
*** ** **** ******* **** ********** * * ************ ****
consensus_4623#0 GGGNCAGCACAATACGGATAAACACATGGTGCCCCGGGTGACGCTGGAGAGCACCAGCAG 476
consensus_4623#1 GGGAAGA---AATACGGA-AAACAT---GTGCC----GTTGCGTGAGAGAA-------AG 606
*** ******** ***** ***** ** ** **** **
consensus_4623#0 AGCNGCTGTATGCAGCAGACAGCAGAGAGCGCTGCAGCAGCAACNGNGGAGAGGACGANG 536
consensus_4623#1 AGAGAGTGTATGAGAGAGAGAG-AGAGAGCG----AGAGAAAGAGAGAGAGAGGGAGAGG 661
** ****** *** ** ******** ** * ****** ** *
consensus_4623#0 GGCAGAGGGNGCAGNAGACGGAGAAGGAAGACAAACCAGTTGCNTTCGAAAANACGGGAA 596
consensus_4623#1 GAGAGAGAGAGAGAGAAACAATGTTGAAA--TGAACCATTTTAAATAGTGTGGTTTGTA- 718
* **** * * * ** * * ** ***** ** * * * *
consensus_4623#0 ACCGCATCTCTNTCTACANCTCAAGTTGTTGGGTATGCTGTCANCACATTCAGGCGCNAC 656
consensus_4623#1 ------------------------------------------------------------
consensus_4623#0 CCGAACNAGTACAGAGGGNAAATAAAGAACNANATTNGTTAAATCGNGGACAAGTGGTAT 716
consensus_4623#1 ------------------------------------------------------------
consensus_4623#0 TAATTTCCCACTAACAGCAACNACGTAAGTTGCACGCCATNTTTGGGGTCGGGNCNNAAA 776
consensus_4623#1 ------------------------------------------------------------
consensus_4623#0 CTATAACGCGAGCAGGNACCATCATTGTTGTTTCGAAACNCAGTNGATTACGACAANGNT 836
consensus_4623#1 ------------------------------------------------------------
consensus_4623#0 CCNGNACCGGCCCACAACAGGAAACCCNAGGCGACCCCCCAGCGCCAGGGG 887
consensus_4623#1 ---------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||