These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4633#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [CCGCAGGCTTGGTCCGATGGGCTAATTCATGCGATAAGCAACGTAAAAAAACAATTATTCGTATCCGATTTGGCCGTCGTTATCAAGGATAAGTATCCCAAAGCCCTTCATCATTTTTTGGTACTACCCTGGAAGGACATAGATTCGGTATATGATGTGCGTATGATATACTAAAGCAGTTGCGCTTGGTGATTCGACCACGAATGAATTGCGCACTATCCGCTTTTATTTTAGCTATCGTCCGACGACGATGGACTGTTACAGAACATGTACGAGCTAGGCTTAAAAGCCGTCGGTACGACTGGCCTCACAGTTGATCGGTTCGATTTTGGCTACCATATGAAACCCTCCATGAGACGCTTGCACCTCCACGTCATCTCGAAAGATTATTACTCGCCGTGTCTATCGCACCGATACCACTGGAACGCATTCAATACCGAGTTCCTTCTTAAGCATGAAAACATGTATTTACAGATGTAGTGGAAAAGCTACACGAAGCGGGACACATACATCGCCCTTCCTTGCATTACATTATGAAGCTTCTTGAGACACCGTTGCAATGCAATCAGTGCATGTACAACCCGAACAATTTTGCGGACCTAAAGCTGCACCTGCAAGCAACACGT] [+] EMBL BM588698 [CCGCAGGCTTGGTCCGATGGGCTAATTCATGCGATAAGCAACGTAAAAAAACAATTATTCGTATCCGATTTGGCCGTCGTTATCAAGGATAAGTATCCCAAAGCCCTTCATCATTTTTTGGTACTACCCTGGAAGGACATAGATTCGGTATATGATGTGCGTATGATATACTAAAGCAGTTGCGCTTGGTGATTCGACCACGAATGAATTGCGCACTATCCGCTTTTATTTTAGCTATCGTCCGACGACGATGGACTGTTACAGAACATGTACGAGCTAGGCTTAAAAGCCGTCGGTACGACTGGCCTCACAGTTGATCGGTTCGATTTTGGCTACCATATGAAACCCTCCATGAGACGCTTGCACCTCCACGTCATCTCGAAAGATTATTACTCGCCGTGTCTATCGCACCGATACCACTGGAACGCATTCAATACCGAGTTCCTTCTTAAGCATGAAAACATGTATTTACAGATGTAGTGGAAAAGCTACACGAAGCGGGACACATACATCGCCCTTCCTTGCATTACATTATGAAGCTTCTTGAGACACCGTTGCAATGCAATCAGTGCATGTACAACCCGAACAATTTTGCGGACCTAAAGCTGCACCTGCAAGCAACACGT] consensusID : consensus_4633#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [TTCAATACCGAGTTCCTTCTTAAGCATGAAAATGTAGTGGAAAAGCTACACGGAGCGGGACACATACATCGACCTTCCTTGCATTACATTATGAAGCTTCTTGAGACACCGTTGCAATGCAATCAGTGCATGTACAACCCGAACAATTTTTCGGACCTAAAGCTGCACCTGAAGCAACACGTGGAAAGTGATATCGAAAGCACAACCAGCTGAAACAAGTGTTCGTGTGAATCAGTCTCAGGGAGGCGTTTTATATACAGGTAAAGGGATTGAATAGTCGAATTTAGGTTGCCAGTCCGATTAGCTTCAAGCGTGCTACAAGAACATTGTTAGAGAGATTCGAGGCCAAAGCAATATTCAGTAGTACTGAATTGGCACGGGGAAAATTTCTCTACGTGTTTTGCTGTATCTGCCTTGATCGAGGCAAATGCCAATATGCGGACAAAGTGCCCCTCAAAATAGCAGAATATATTTTTCAGATCGTTTTCCATACACTTCGCTAAACAAGAACACAAAGCCTGTGAATTGGCGCAACGGAGTACGGGAGCAAAGCTTATGCTCATTCTAGTTAGAAACTTGCGTTTGAAAAGAACTGGTTCCG] [+] EMBL BX628931 [TTCAATACCGAGTTCCTTCTTAAGCATGAAAATGTAGTGGAAAAGCTACACGGAGCGGGACACATACATCGACCTTCCTTGCATTACATTATGAAGCTTCTTGAGACACCGTTGCAATGCAATCAGTGCATGTACAACCCGAACAATTTTTCGGACCTAAAGCTGCACCTGAAGCAACACGTGGAAAGTGATATCGAAAGCACAACCAGCTGAAACAAGTGTTCGTGTGAATCAGTCTCAGGGAGGCGTTTTATATACAGGTAAAGGGATTGAATAGTCGAATTTAGGTTGCCAGTCCGATTAGCTTCAAGCGTGCTACAAGAACATTGTTAGAGAGATTCGAGGCCAAAGCAATATTCAGTAGTACTGAATTGGCACGGGGAAAATTTCTCTACGTGTTTTGCTGTATCTGCCTTGATCGAGGCAAATGCCAATATGCGGACAAAGTGCCCCTCAAAATAGCAGAATATATTTTTCAGATCGTTTTCCATACACTTCGCTAAACAAGAACACAAAGCCTGTGAATTGGCGCAACGGAGTACGGGAGCAAAGCTTATGCTCATTCTAGTTAGAAACTTGCGTTTGAAAAGAACTGGTTCCG] consensusID : consensus_4633#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [CATGGACGTTACGAACTGTACGAGCTAGGCTTAAAAGCCGTTGGTACGACTGGCCTCACAGTTGATCGGTTCGATTTTGGCTACCATATGAAACCCTCCATGAGACGCTTGCACCTCCACGTCATCTCGAAAGATTATTACTCGCCGTGTCTATCGCACCGATACCACTGGAACGCATTCAATACCGAGTTCCTTCTTAAGCATGAAAATGTAGTGGAAAAGCTACACGAAGCGGGACACATACATCGCCCTTCCTTGCATTACATTATGAAGCTTCTTGAGACACCGTTGCAATGCAATCAGTGCATGTACAACCCGAACAATTTTGCGGACCTAAAGCTGCACCTGAAGCAACACGTGGAAAGTGATATCCGAAAGCACAACCAGCTGAAANCAAGTGTTCGTGTGAATCAGTCTCAGGGAGGCGTTTTATGTACAGATCGTTTTCCATACACTTCGCTAAACAAAGANCACCAAGCCTGCGANTCGGCACAACGGAGTA] [+] EMBL BX619569 [CATGGACGTTACGAACTGTACGAGCTAGGCTTAAAAGCCGTTGGTACGACTGGCCTCACAGTTGATCGGTTCGATTTTGGCTACCATATGAAACCCTCCATGAGACGCTTGCACCTCCACGTCATCTCGAAAGATTATTACTCGCCGTGTCTATCGCACCGATACCACTGGAACGCATTCAATACCGAGTTCCTTCTTAAGCATGAAAATGTAGTGGAAAAGCTACACGAAGCGGGACACATACATCGCCCTTCCTTGCATTACATTATGAAGCTTCTTGAGACACCGTTGCAATGCAATCAGTGCATGTACAACCCGAACAATTTTGCGGACCTAAAGCTGCACCTGAAGCAACACGTGGAAAGTGATATCCGAAAGCACAACCAGCTGAAANCAAGTGTTCGTGTGAATCAGTCTCAGGGAGGCGTTTTATGTACAGATCGTTTTCCATACACTTCGCTAAACAAAGANCACCAAGCCTGCGANTCGGCACAACGGAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4633#0 -------CCGCAGGCTTGGTCCGATGGGCTAATTCATGCGATAAGCAACGTAAAAAAACA 53 consensus_4633#2 ------------------------------------------------------------ consensus_4633#1 TTCAATACCGAGTTCCTTCTTAAGCATGAAAATGTAGTGGAAAAGCTACACGGAGCGGGA 60 consensus_4633#0 ATTATTCGTATCCGATTTGGCCGTCGTTATCAAGGATAAGTATCCCAAAGCCCTTCATCA 113 consensus_4633#2 ------------------------------------------------------------ consensus_4633#1 CACATACAT---CGACCTTCCTTGCATTACATTATGAAGCTTCTTGAGACACCGTTGCAA 117 consensus_4633#0 TTTT-TTGGTAC-TACCCTGGAAGGACATAGATTCGGTATATGATGTGCGTATGATATAC 171 consensus_4633#2 ------------------------------------------------------------ consensus_4633#1 TGCAATCAGTGCATGTACAACCCGAACAATTTTTCGGACCTAAAGCTGCACCTGAAGCAA 177 consensus_4633#0 TAAAGCAGTTGCGCTTGGTGATTCGACCACGAATGAATTGCGCACTATCCGCTTTTATTT 231 consensus_4633#2 ------------------------------------------------------------ consensus_4633#1 CAC----GTGGAAAGTGATATCGAAAGCACAACCAGCTGAAACAAGTGTTCGTGTGAATC 233 consensus_4633#0 TAGCTATCGTCCGACGACGATGGACTGTTACAGAACATGTACGAGCTAGGCTTAAAAGCC 291 consensus_4633#2 ------------------CATGGAC-GTTAC-GAAC-TGTACGAGCTAGGCTTAAAAGCC 39 consensus_4633#1 AGTCTCAGGGAGGCGTTTTATATACAGGTAAAGGGATTGAAT-AGTCGAATTTAG--GTT 290 ** ** * ** * ** * ** *** * consensus_4633#0 GTCGGTACGACTGGCCTCACAGTTGATCGGTTCGATTTTGGCTACCATATGAAACCCTCC 351 consensus_4633#2 GTTGGTACGACTGGCCTCACAGTTGATCGGTTCGATTTTGGCTACCATATGAAACCCTCC 99 consensus_4633#1 GCCAGTCCGATTAGCTTCA-AGCGTGCTACAAGAACATTGTTAGAGAGATTCGAGGCCAA 349 * ** *** * ** *** ** * *** * ** * * consensus_4633#0 ATGAGACGCTTGCACCTCCACGTCATCTCGAAAGATTATTACTCGCCGTGTCT-ATCGCA 410 consensus_4633#2 ATGAGACGCTTGCACCTCCACGTCATCTCGAAAGATTATTACTCGCCGTGTCT-ATCGCA 158 consensus_4633#1 AGCAATATTCAGTAGTACTGAATTGGCACGGG-GAAAATTTCTCTACGTGTTTTGCTGTA 408 * * * * * * * ** ** *** *** ***** * * * consensus_4633#0 CCGATACCACTGGAACGCATTCAATACCGAGTTCCTTCTTAAGCATGAAAACATGTATTT 470 consensus_4633#2 CCGATACCACTGGAACGCATTCAATACCGAGTTCCTTCTTAAGCATGAAAA--------- 209 consensus_4633#1 TCTGC----CTTGATCGAGGCAAATGCCAATATGCGGACAAAGTGCCCCTC--------- 455 * ** ** ** *** ** * * * *** consensus_4633#0 ACAGATGTAGTGGAAAAGCTACACGAAGCGGGACACATACATCGCCCTTCCTTGCATTAC 530 consensus_4633#2 -----TGTAGTGGAAAAGCTACACGAAGCGGGACACATACATCGCCCTTCCTTGCATTAC 264 consensus_4633#1 ---AAAATAGCAGAA----TATATTTTTCAGATCGTTTTCCATACACTTCGCTAAACAAG 508 *** *** ** * * * * * * * **** * * * consensus_4633#0 ATTATGAAGCTTCTTGAGACACCGTTGCAATGCAATCAGTGCATGTACAACCCGAACAAT 590 consensus_4633#2 ATTATGAAGCTTCTTGAGACACCGTTGCAATGCAATCAGTGCATGTACAACCCGAACAAT 324 consensus_4633#1 AACACAAAGCCTGTGAA----TTGGCGCAACGGAGT--ACGGGAGCAAAGCTTATGCT-C 561 * * **** * * * * **** * * * * * * * * * consensus_4633#0 TTTGCGGACCTAAAGCTGCACCTGCAAGCAACACGT------------------------ 626 consensus_4633#2 TTTGCGGACCTAAAGCTGCACCTG-AAGCAACACGTGGAAAGTGATATCCGAAAGCACAA 383 consensus_4633#1 ATTCTAGTTAGAAACTTGCGTTTGAAAAGAACTGGTTCCG-------------------- 601 ** * *** *** ** ** *** ** consensus_4633#0 ------------------------------------------------------------ consensus_4633#2 CCAGCTGAAANCAAGTGTTCGTGTGAATCAGTCTCAGGGAGGCGTTTTATGTACAGATCG 443 consensus_4633#1 ------------------------------------------------------------ consensus_4633#0 ----------------------------------------------------------- consensus_4633#2 TTTTCCATACACTTCGCTAAACAAAGANCACCAAGCCTGCGANTCGGCACAACGGAGTA 502 consensus_4633#1 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||