These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4640#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 845 fasta sequence [CCGGACCGATAACCGAAAAACGAGCCGAAGAATGCAACGTTTGGCATAATGGAATAAAGGACCATAAAACGGTGTGCGTGTATCGAGCGGGTGAAGTAACGCAGTATGCAAATGTGTGTGCGGGGTCATCTCTCCCCCTCTTCACCCTCCCAAAAAAAGCAAGACAGTGTGAACACTTACTGCATAGCGTTAAATAAAAACATACAAAAAAAAATAAGAAAAAAACGTCACTTATAATATACAAAACAGAAACTGGCAAAGAAAATGTGCTGAAAATGTGAAAGAAGAGCAGATGGCGACAGTTGATAACACAACAAACGCATAATAAATAAGAAGGAAAGGGAAGGAAGGGGTAGAGAAAAAAGAAAACGGATAAAATCAAAACCAAAAATGAAAAGATACTATTAACTAAACAAGCAAACAACACGAAACACACATGAACGAAGCGGTTTGCGAGAGAGAAGCAAGTAGGTAGGACGGACGAGGAAGTGCGCGCGTGTATGAGCAAAAGCAAATTGCATTTGGGTGTAAGCAGGGTGGAGGAAAGCTAGATAAGAGCAAAACCAATCCTAATTGCGTGAGAAAAAAAAAACAAACAAACAAAAAACACACACAAATGGGAAAAGAAAATCCCTTCTAAATCGTGGCTTTCCTTCCTTGCTTCTCTCTCTCTCTGAACACCGCGCACAAGCGTCACAGACGTTTGTATTTAACCGTAGGGACGATTGTTTTTCCTCCGTTTTTTCCCCCTCCCCTTAACCCGGGAAGTAGAGCATTCATCCATAAAGTGTATAAACTCCTTTGACTTATTATTATAATGAAATAGAAGAAAATGAAAAAAAAAA] [+] EMBL BM605410 [CCGGACCGATAACCGAAAAACGAGCCGAAGAATGCAACGTTTGGCATAATGGAATAAAGGACCATAAAACGGTGTGCGTGTATCGAGCGGGTGAAGTAACGCAGTATGCAAATGTGTGTGCGGGGTCATCTCTCCCCCTCTTCACCCTCCCAAAAAAAGCAAGACAGTGTGAACACTTACTGCATAGCGTTAAATAAAAACATACAAAAAAAAATAAGAAAAAAACGTCACTTATAATATACAAAACAGAAACTGGCAAAGAAAATGTGCTGAAAATGTGAAAGAAGAGCAGATGGCGACAGTTGATAACACAACAAACGCATAATAAATAAGAAGGAAAGGGAAGGAAGGGGTAGAGAAAAAAGAAAACGGATAAAATCAAAACCAAAAATGAAAAGATACTATT ] [+] EMBL BX608479 [ CGTGTATCGAGCGGGTGAAGTAACGCAGTATGCAAATGTGTGTGCGGGGTCATCTCTCCCCCTCTTCACCCTCCCAAAAAAAGCAAGACAGTGTGAACACTTACTGCATAGCGTTAAATAAAAACATACAAAAAAAAATAAGAAAAAAACGTCACTTATAATATACAAAACAGAAACTGGCAAAGAAAATGTGCTGAAAATGTGAAAGAAGAGCAGATGGCGACAGTTGATAACACAACAAACGCATAATAAATAAGAAGGAAAGGGAAGGAAGGGGTAGAGAAAAAAGAAAACGGATAAAATCAAAACAAAAAATGAAAAGATACTATTAACTAAACAAGCAAACAACACGAAACACACATGAACGAAGCGGTTTGCGAGAGAGAAGCAAGTAGGTAGGACGGACGAGGAAGTGCGCGCGTGTATGAGCAAAAGCAAATTGCATTTGGGTGTAAGCAGGGTGGAGGAAAGCTAGATAAGAGCAAAACCAATCCTAATTGCGTGAGAAAAAAAAAACAAACAAACAAAAAACACACACAAATGGGAAAAGAAAATCCCTTCTAAATCGTGGCTTTCCTTCCTTGCTTCTCTCTCTCTCTGAACACCGCGCACAAGCGTCACAGACGTTTGTATTTAACCGTAGGGACGATTGTTTTTCCTCCGTTTTTTCCCCCTCCCCTTAACCCGGGAAGTAGAGCATTCATCCATAAAGTGTATAAACTCCTTTGACTTATTATTATAATGAAATAGAAGAAAATGAAAAAAAAAA] consensusID : consensus_4640#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [CCGCCCACGCGTCCGAAAAAAACGTCACTTATAATATACAAAACAGAAACTGGCAAAGAAAATGTGCTGAAAATGTGAAAGAAGAGCAGATGGCGACAGTTGATAACACAACAAACGCATAATAAATAAGAAGGAAAGGGAAGGAAGGGGTAGAGAAAAAAGAAAACGGATAAAATCAAAACAAAAAATGAAAAGATACTATTAACTAAACAAGCAAACAACACGAAACACACATGAACGAAGCGGTTTGCGAGAGGGAAGCAAGTAGGTAGGACGGACGAGGAAGTGCGCGCGTGTATGAGCAAAAGCAAATTGCATTTGGGTGTAAGCAGGGTGGAGGAAAGCTAGATAAGAGCAAAACCAATCCTAATTGCGTGAGAAAAAAAAAAACAAACAAACAAAAAACACACACAAATGGGAAAAGAAAATCCCTTCTAAATCGTGGCTTTCCTTCCTTGCTTCTCTCTCTCTCTGAACACCGCGCACAAGCGTCACAGACGTTTGTATTTAACCGTAGGGACGATTGTTTTTCCTCCGTTTTTTCCCCCTCCCCTTAAACCCGGGAAGTAGAGCATT] [+] EMBL BM578409 [CCGCCCACGCGTCCGAAAAAAACGTCACTTATAATATACAAAACAGAAACTGGCAAAGAAAATGTGCTGAAAATGTGAAAGAAGAGCAGATGGCGACAGTTGATAACACAACAAACGCATAATAAATAAGAAGGAAAGGGAAGGAAGGGGTAGAGAAAAAAGAAAACGGATAAAATCAAAACAAAAAATGAAAAGATACTATTAACTAAACAAGCAAACAACACGAAACACACATGAACGAAGCGGTTTGCGAGAGGGAAGCAAGTAGGTAGGACGGACGAGGAAGTGCGCGCGTGTATGAGCAAAAGCAAATTGCATTTGGGTGTAAGCAGGGTGGAGGAAAGCTAGATAAGAGCAAAACCAATCCTAATTGCGTGAGAAAAAAAAAAACAAACAAACAAAAAACACACACAAATGGGAAAAGAAAATCCCTTCTAAATCGTGGCTTTCCTTCCTTGCTTCTCTCTCTCTCTGAACACCGCGCACAAGCGTCACAGACGTTTGTATTTAACCGTAGGGACGATTGTTTTTCCTCCGTTTTTTCCCCCTCCCCTTAAACCCGGGAAGTAGAGCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4640#0 CCGGACCGATAACCGAAAAACGAGCCGAAGAATGCAACGTTTGGCATAATGGAATAAAGG 60 consensus_4640#1 ------------------------------------------------------------ consensus_4640#0 ACCATAAAACGGTGTGCGTGTATCGAGCGGGTGAAGTAACGCAGTATGCAAATGTGTGTG 120 consensus_4640#1 ------------------------------------------------------------ consensus_4640#0 CGGGGTCATCTCTCCCCCTCTTCACCCTCCCAAAAAAAGCAAGACAGTGTGAACACTTAC 180 consensus_4640#1 ------------------------------------------------------------ consensus_4640#0 TGCATAGCGTTAAATAAAAACATACAAAAAAAAATAAGAAAAAAACGTCACTTATAATAT 240 consensus_4640#1 -----------------------CCGCCCACGCGTCCGAAAAAAACGTCACTTATAATAT 37 * * * *********************** consensus_4640#0 ACAAAACAGAAACTGGCAAAGAAAATGTGCTGAAAATGTGAAAGAAGAGCAGATGGCGAC 300 consensus_4640#1 ACAAAACAGAAACTGGCAAAGAAAATGTGCTGAAAATGTGAAAGAAGAGCAGATGGCGAC 97 ************************************************************ consensus_4640#0 AGTTGATAACACAACAAACGCATAATAAATAAGAAGGAAAGGGAAGGAAGGGGTAGAGAA 360 consensus_4640#1 AGTTGATAACACAACAAACGCATAATAAATAAGAAGGAAAGGGAAGGAAGGGGTAGAGAA 157 ************************************************************ consensus_4640#0 AAAAGAAAACGGATAAAATCAAAACCAAAAATGAAAAGATACTATTAACTAAACAAGCAA 420 consensus_4640#1 AAAAGAAAACGGATAAAATCAAAACAAAAAATGAAAAGATACTATTAACTAAACAAGCAA 217 ************************* ********************************** consensus_4640#0 ACAACACGAAACACACATGAACGAAGCGGTTTGCGAGAGAGAAGCAAGTAGGTAGGACGG 480 consensus_4640#1 ACAACACGAAACACACATGAACGAAGCGGTTTGCGAGAGGGAAGCAAGTAGGTAGGACGG 277 *************************************** ******************** consensus_4640#0 ACGAGGAAGTGCGCGCGTGTATGAGCAAAAGCAAATTGCATTTGGGTGTAAGCAGGGTGG 540 consensus_4640#1 ACGAGGAAGTGCGCGCGTGTATGAGCAAAAGCAAATTGCATTTGGGTGTAAGCAGGGTGG 337 ************************************************************ consensus_4640#0 AGGAAAGCTAGATAAGAGCAAAACCAATCCTAATTGCGTGAGAAAAAAAAAA-CAAACAA 599 consensus_4640#1 AGGAAAGCTAGATAAGAGCAAAACCAATCCTAATTGCGTGAGAAAAAAAAAAACAAACAA 397 **************************************************** ******* consensus_4640#0 ACAAAAAACACACACAAATGGGAAAAGAAAATCCCTTCTAAATCGTGGCTTTCCTTCCTT 659 consensus_4640#1 ACAAAAAACACACACAAATGGGAAAAGAAAATCCCTTCTAAATCGTGGCTTTCCTTCCTT 457 ************************************************************ consensus_4640#0 GCTTCTCTCTCTCTCTGAACACCGCGCACAAGCGTCACAGACGTTTGTATTTAACCGTAG 719 consensus_4640#1 GCTTCTCTCTCTCTCTGAACACCGCGCACAAGCGTCACAGACGTTTGTATTTAACCGTAG 517 ************************************************************ consensus_4640#0 GGACGATTGTTTTTCCTCCGTTTTTTCCCCCTCCCCTTAA-CCCGGGAAGTAGAGCATTC 778 consensus_4640#1 GGACGATTGTTTTTCCTCCGTTTTTTCCCCCTCCCCTTAAACCCGGGAAGTAGAGCATT- 576 **************************************** ****************** consensus_4640#0 ATCCATAAAGTGTATAAACTCCTTTGACTTATTATTATAATGAAATAGAAGAAAATGAAA 838 consensus_4640#1 ------------------------------------------------------------ consensus_4640#0 AAAAAAA 845 consensus_4640#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||