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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4642#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1189 fasta sequence
[GGTTTATCTTTTTTTAGACGGTATTTAGAAGTTTGTGATTTTTTTTCTCTGCTTCCGCTATTTCACTACATCGGGGCATTCAAATGCAGCCATTTCAGCACAGACACCCACCATTCCTTCTGCTTCTTTTCTGTTCACAACAGTAAAGTGGTCTTTTTTTTTCCTTTTTCCTGCTAAGCGTTCCTTTCTTCTTATCGTCTCTTATTTGTTTCTTTATCAGAATGGTTGATGGCTTATGGGTGTGTGTATGTGTTAGTGTTAGTGTGTGTTTTACAATGTTCCATGTTGTCCACTAAATTATCATATGTACACAGAAGTCATTAAAGCATGTTTTCACTTCCACGTTGGATCCGTCCACTGTATGTATGTTCTCGCTGTACTCTTTTTCGCGAGTTTTTTTTTCTTGTTTAAATTATGTATGTATGTATATATATATATGTTGGTTTTGTTTTTAACAGTGTCTATTGTTAAACCTTTCCTTTGCCACTTTCAACCGTTCTATTTTGGTTGAAGTTGCTTGGTTTTCTCTTCTCTTCTGCTGTTCTTAATTTGGTTTACAGGATCGGTTGGCTTCAATACGTTTCTTACACTAAAAAAAAAACACTCACACTGTTACATGTTTTGGTTTTACCGACTTCTTTCAACCGTTCTCTCAATTCTCAATTGGCGCCCGTACGGCTCTATCGTTTAGGATACCTTGTTAGTGTTCTCTCGTTTTGGTTATATATTGTTTTCGTTTTCTTCTTCTTCCTTCTCCTTCTTTTCTCAATTTCATTTAGTGCCACGGTTGTCTGGGACAAGCCAACATGGCAAACATTAGTTTTTTTTCACTCCCTTTTGTCGAGACACATTTAATGTTCTCTTCTGTTGTTGTGTCGTTTGTCCTTTATTGTTTTCTAATTTATAAAAATAAATATAAGTTTATTTTCACGCTTTCTGTTCTCTTCTTCCACTTTCACTGCTTTCTTGTAAGTTTGTATATATTTTCTCTCTGACAAACACTCCTTCTCTCTCTTTCTACCTCTTTCTCTTTGCAAACCCTTCCCAAATGGCCTTTTTGGTTTGTTTTTTTTTGTGTTGCTCCTGTCCCTTCTAGCTGAGGCCAAATCCTGTAAACCAAATTAAGAACAGCAGAAGAGAAGAAGAAAAAAAAAACAAAACAAAAATATTAATGTTATTTATTTATTGA]
[+] EMBL BX622836 [GGTTTATCTTTTTTTAGACGGTATTTAGAAGTTTGTGATTTTTTTTCTCTGCTTCCGCTATTTCACTACATCGGGGCATTCAAATGCAGCCATTTCAGCACAGACACCCACCATTCCTTCTGCTTCTTTTCTGTTCACAACAGTAAAGTGGTCTTTTTTTTTCCTTTTTCCTGCTAAGCGTTCCTTTCTTCTTATCGTCTCTTATTTGTTTCTTTATCAGAATGGTTGATGGCTTATGGGTGTGTGTATGTGTTAGTGTTAGTGTGTGTTTTACAATGTTCCATGTTGTCCACTAAATTATCATATGTACACAGAAGTCATTAAAGCATGTTTTCACTTCCACGTTGGATCCGTCCACTGTATGTATGTTCTCGCTGTACTCTTTTTCGCGAGTTTTTTTTTCTTGTTTAAATTATGTATGTATGTATATATATATATGTTGGTTTTGTTTTTAACAGTGTCTATTGTTAAACCTTTCCTTTGCCACTTTCAACCGTTCTATTTTGGTTGAAGTTGCTTGGTTTTCTCTTCTCTTCTGCTGTTCTTAATTTGGTTTACAGGATCGGTTGGCTTCAATACGTTTCTTACACTAAAAAAAAAACACTCACACTGTTACATGTTTTGGTTTTACCGACTTCTTTCAACCGTTCTCTCAATTCTCAATTGGCGCCCGTACGGCT ]
[-] EMBL BX628011 [ AAAAAAAAACACTCACACTGTTAAATGTTTTGGTTTTACCGACTTCTTTCAACCGTTCTCTCAATTCTCAATTGGCGCCCGTACGGCTCTATCGTTTAGGATACCTTGTTAGTGTTCTCTCGTTTTGGTTATATATTGTTTTCGTTTTCTTCTTCTTCCTTCTCCTTCTTTTCTCAATTTCATTTAGTGCCACGGTTGTCTGGGACAAGCCAACATGGCAAACATTAGTTTTTTTTCACTCCCTTTTGTCGAGACACATTTAATGTTCTCTTCTGTTGTTGTGTCGTTTGTCCTTTATTGTTTTCTAATTTATAAAAATAAATATAAGTTTATTTTCACGCTTTCTGTTCTCTTCTTCCACTTTCACTGCTTTCTTGTAAGTTTGTATATATTTTCTCTCTGACAAACACTCCTTCTCTCTCTTTCTACCTCTTTCTCTTTGCAAACCCTTCCCAAATGGCCTTTTTGGTTTGTTTTTTTTTGTGTTGCTCCTGTCCCTTCTAGCTGAGGCCAAATCCTGTAAACCAAATTAAGAACAGCAGAAGAGAAGAAGAAAAAAAAAACAAAACAAAAATATTAATGTTATTTATTTATTGA]
consensusID : consensus_4642#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence
[GTCCTTTATTGTTTTCTAATTTATAAAAATAAATATAAGTTTATTTTCACGCTTTCTGTTCTCTTCTTCCACTTTCACTGCTTTCTTGTAAGTTTGTATATATTTTCTCTCTGACAAACACTCCTTCTCTCTCTTTCTACCTCTTTCTCTTTGCAAACCCTTCCCAAATGGCCTTTTTGGTTTGTTTTTTTTTTGTGTTGCTCCTGTCCCTTCTAGCTGAGGCCAAATCCTGTCGCATCAGTTCGGTCTGTTTTTCGGTCTTAAATGATCTGCTAGTTTGCGATCATCTTTCGTTTCACTACTAATCACGTGTTTGTCGCGTTGGAGAACAAAAATGTACCGATTTTAGACCTGTTTTGCGTCTCGTAACCGCGCCCTTCTTTGTTTAATTGTATTCACTACGTTCAACGGAAATGCAACGAATCAAATCGG]
[-] EMBL BM651593 [GTCCTTTATTGTTTTCTAATTTATAAAAATAAATATAAGTTTATTTTCACGCTTTCTGTTCTCTTCTTCCACTTTCACTGCTTTCTTGTAAGTTTGTATATATTTTCTCTCTGACAAACACTCCTTCTCTCTCTTTCTACCTCTTTCTCTTTGCAAACCCTTCCCAAATGGCCTTTTTGGTTTGTTTTTTTTTTGTGTTGCTCCTGTCCCTTCTAGCTGAGGCCAAATCCTGTCGCATCAGTTCGGTCTGTTTTTCGGTCTTAAATGATCTGCTAGTTTGCGATCATCTTTCGTTTCACTACTAATCACGTGTTTGTCGCGTTGGAGAACAAAAATGTACCGATTTTAGACCTGTTTTGCGTCTCGTAACCGCGCCCTTCTTTGTTTAATTGTATTCACTACGTTCAACGGAAATGCAACGAATCAAATCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4642#0 GGTTTATCTTTTTTTAGACGGTATTTAGAAGTTTGTGATTTTTTTTCTCTGCTTCCGCTA 60
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 TTTCACTACATCGGGGCATTCAAATGCAGCCATTTCAGCACAGACACCCACCATTCCTTC 120
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 TGCTTCTTTTCTGTTCACAACAGTAAAGTGGTCTTTTTTTTTCCTTTTTCCTGCTAAGCG 180
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 TTCCTTTCTTCTTATCGTCTCTTATTTGTTTCTTTATCAGAATGGTTGATGGCTTATGGG 240
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 TGTGTGTATGTGTTAGTGTTAGTGTGTGTTTTACAATGTTCCATGTTGTCCACTAAATTA 300
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 TCATATGTACACAGAAGTCATTAAAGCATGTTTTCACTTCCACGTTGGATCCGTCCACTG 360
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 TATGTATGTTCTCGCTGTACTCTTTTTCGCGAGTTTTTTTTTCTTGTTTAAATTATGTAT 420
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 GTATGTATATATATATATGTTGGTTTTGTTTTTAACAGTGTCTATTGTTAAACCTTTCCT 480
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 TTGCCACTTTCAACCGTTCTATTTTGGTTGAAGTTGCTTGGTTTTCTCTTCTCTTCTGCT 540
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 GTTCTTAATTTGGTTTACAGGATCGGTTGGCTTCAATACGTTTCTTACACTAAAAAAAAA 600
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 ACACTCACACTGTTACATGTTTTGGTTTTACCGACTTCTTTCAACCGTTCTCTCAATTCT 660
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 CAATTGGCGCCCGTACGGCTCTATCGTTTAGGATACCTTGTTAGTGTTCTCTCGTTTTGG 720
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 TTATATATTGTTTTCGTTTTCTTCTTCTTCCTTCTCCTTCTTTTCTCAATTTCATTTAGT 780
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 GCCACGGTTGTCTGGGACAAGCCAACATGGCAAACATTAGTTTTTTTTCACTCCCTTTTG 840
consensus_4642#1 ------------------------------------------------------------
consensus_4642#0 TCGAGACACATTTAATGTTCTCTTCTGTTGTTGTGTCGTTTGTCCTTTATTGTTTTCTAA 900
consensus_4642#1 -----------------------------------------GTCCTTTATTGTTTTCTAA 19
*******************
consensus_4642#0 TTTATAAAAATAAATATAAGTTTATTTTCACGCTTTCTGTTCTCTTCTTCCACTTTCACT 960
consensus_4642#1 TTTATAAAAATAAATATAAGTTTATTTTCACGCTTTCTGTTCTCTTCTTCCACTTTCACT 79
************************************************************
consensus_4642#0 GCTTTCTTGTAAGTTTGTATATATTTTCTCTCTGACAAACACTCCTTCTCTCTCTTTCTA 1020
consensus_4642#1 GCTTTCTTGTAAGTTTGTATATATTTTCTCTCTGACAAACACTCCTTCTCTCTCTTTCTA 139
************************************************************
consensus_4642#0 CCTCTTTCTCTTTGCAAACCCTTCCCAAATGGCCTTTTTGGTTTGTTTTTTTTT-GTGTT 1079
consensus_4642#1 CCTCTTTCTCTTTGCAAACCCTTCCCAAATGGCCTTTTTGGTTTGTTTTTTTTTTGTGTT 199
****************************************************** *****
consensus_4642#0 GCTCCTGTCCCTTCTAGCTGAGGCCAAATCCTGTAAACCAAATTAAGAACAGCAGAAGAG 1139
consensus_4642#1 GCTCCTGTCCCTTCTAGCTGAGGCCAAATCCTGTCGCATCAGTTCGGTCTGTTTTTCGGT 259
********************************** * ** * *
consensus_4642#0 AAGAAGAAAAAAAAAACAAAACAAAAATATTAATGTTATTTATTTATTGA---------- 1189
consensus_4642#1 CTTAAATGATCTGCTAGTTTGCGATCATCTTTCGTTTCACTACTAATCACGTGTTTGTCG 319
** * * * * ** ** ** ** * **
consensus_4642#0 ------------------------------------------------------------
consensus_4642#1 CGTTGGAGAACAAAAATGTACCGATTTTAGACCTGTTTTGCGTCTCGTAACCGCGCCCTT 379
consensus_4642#0 -----------------------------------------------------
consensus_4642#1 CTTTGTTTAATTGTATTCACTACGTTCAACGGAAATGCAACGAATCAAATCGG 432
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||