These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4643#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 744 fasta sequence [CCGGTTCGGCCAACAATACACTGGGTTGGGAAAAGTGTATCTTTTTCGTTGAATTTATAACAAATTCAACGCAAAAAAACGATTACATTAAGCAGAATGCTGCTGTTCGTGTGAATAGTACAGGTCTTCAGTTTTCGTTGCGTTCAGAAGGGTCGTTGACTACAGACTGTGCAAACATTGGTTTGTTGGTGCAGCTATACAGTGCAAGGGGTGGGGTGTACGTGGTTTGAAACCGGCACAAAAGCTACTCGTGGAAGGAAGTTAGGGAAATAATACGAACAAAACAACGCTTGTTCGGCGAAAAGAATCCTCGACCGTCCAAGTAAGCAGCACGTAGTTGTAGGCTGCTTGTGGGAGGGTGCGTGTGTGTGAGTGTGTGTGTGTTCGGTTCGCTGTGTGTGTTGCATCCGGTAAAGCGATATCGAAGTAACACGATAAAGCATTATGACGAGACACAGTTCTGTCACCGGCGGAATGGGCAAGTTGGCCGTAGCTTTCCTTCCGCTGCTCTGCTTGCTGTCGGCAGGACTGGTGGAAGCTTTCTACCTTCCCGGATTGGCGCCGGTCAACTATTGCCGAAAGTCAGAAATGCAAAAGTCATGCAAGTCCGAGGTAACGCTGTACGTGAATCGACTCAACACGGAAGAGTCGGTGATTCCGTACGAGTATCATCACTTTGATTTCTGTCCCATCGACGAAGCGAACTCGCCAGTGGAAAACTTGGGCCAAGGTGGTGTTTGGCGA] [+] EMBL BM583256 [CCGGTTCGGCCAACAATACACTGGGTTGGGAAAAGTGTATCTTTTTCGTTGAATTTATAACAAATTCAACGCAAAAAAACGATTACATTAAGCAGAATGCTGCTGTTCGTGTGAATAGTACAGGTCTTCAGTTTTCGTTGCGTTCAGAAGGGTCGTTGACTACAGACTGTGCAAACATTGGTTTGTTGGTGCAGCTATACAGTGCAAGGGGTGGGGTGTACGTGGTTTGAAACCGGCACAAAAGCTACTCGTGGAAGGAAGTTAGGGAAATAATACGAACAAAACAACGCTTGTTCGGCGAAAAGAATCCTCGACCGTCCAAGTAAGCAGCACGTAGTTGTAGGCTGCTTGTGGGAGGGTGCGTGTGTGTGAGTGTGTGTGTGTTCGGTTCGCTGTGTGTGTTGCATCCGGTAAAGCGATATCGAAGTAACACGATAAAGCATTATGACGAGACACAGTTCTGTCACCGGCGGAATGGGCAAGTTGGCCGTAGCTTTCCTTCCGCTGCTCTGCTTGCTGTCGGCAGGACTGGTGGAAGCTTTCTACCTTCCCGGATTGGCGCCGGTCAACTATTGCCGAAAGTCAGAAATGCAAAAGTCATGCAAGTCCGAGGTAACGCTGTACGTGAATCGACTCAACACGGAAGAGTCGGTGATTCCGTACGAGTA ] [+] EMBL BM586980 [ ccgTGACTACAGACTGTGCAAACATTGGTTTGTTGGTGCAGCTATACAGTGCAAGGGGTGGGGTGGACGTGGTTTGAAACCGGCACAAAAGCTACTCGTGGAAGGAAGTTCGGAAAATAATACGAACAAAACAACGCTTGTTCGGCGAAAAGAATCCTCGACCGTCCAAGTAAGCAGCACGTAGTTGTAGGCTGCTTGTGGGAGGGTGCGTGTGTGTGAGTGTGTGTGTGTGCGGTTCACTGTGTGTGTTGCATCCGGTACAGCGATATCGAAGTAACACGATAAAGCATTATGACGAGACACAGTTCTGTCACCGGCGGAATGGGCAAGTTGGCCGTAGCTTTCCTTCCGCTGCTCTGCTTGCTGTCGGTGGGACTGGTGGAAGCTTTCTACCTTCCCGGATTGGCGCCGGTCAACTATTGCCGAAAGTCAGAAATGCAAAAGTCATGCAAGTCCGAGGTAACGCTGTACGTGAATCGACTCAACACGGAAGAGTCGGTGATTCCGTACGAGTATCATCACTTTGATTTCTGTCCCATCGACGAAGCGAACTCGCCAGTGGAAAACTTGGGCCAAGGTGGTGTTTGGCGA] consensusID : consensus_4643#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CGACCCACGCGTCCGTACACTGGGTTGGGAAAAGTGTATCTTTTTCGTTGAATTTATAACAAATTCAACGCAAAAAAACGATTACATTAAGCAGAATGCTGCTGTTCGTGTGAATAGTACAGGTCTTCAGTTTTCGTTGCGTTCAGAAGGGTCGTTGACTACAGACTGTGCAAACATTGGTTTCTTGGTGCAGCTATACAGTGTAAGGGGTGGGGTGGACGTGGTTTGAAACCGGCACAAAAGCTACTCGTGGAAGGAAGTAAGGAAAATAATACGAACAAAACAACGCTTGTTCGGCGAAAAGAATCCTCGACCGTCCAAGTAAGCAGCACGTAGTTGTAGGCTGCTTGTGGGAGGGTGCGTGTGTGTGTGAGAGTGTGTGTGTGCGGTTCGCTGTGTGTGCTGCATCCGGTACAGCGATATCGAAGTAACACGATAAAGCATTATGACGAGACACAGTTCTGTCACCGGCGGAATGGGCAAGTTGGCCGTAGCTTTCCTTCCGCTGCTCTGCTTGCTGTCGGCGGGACTGGTGGAAGCTTTCTACCTTCCCGGATTGGCGCCGGTCAACTATTGCCGAAAGTCAGAAATGCAA] [+] EMBL BM620068 [CGACCCACGCGTCCGTACACTGGGTTGGGAAAAGTGTATCTTTTTCGTTGAATTTATAACAAATTCAACGCAAAAAAACGATTACATTAAGCAGAATGCTGCTGTTCGTGTGAATAGTACAGGTCTTCAGTTTTCGTTGCGTTCAGAAGGGTCGTTGACTACAGACTGTGCAAACATTGGTTTCTTGGTGCAGCTATACAGTGTAAGGGGTGGGGTGGACGTGGTTTGAAACCGGCACAAAAGCTACTCGTGGAAGGAAGTAAGGAAAATAATACGAACAAAACAACGCTTGTTCGGCGAAAAGAATCCTCGACCGTCCAAGTAAGCAGCACGTAGTTGTAGGCTGCTTGTGGGAGGGTGCGTGTGTGTGTGAGAGTGTGTGTGTGCGGTTCGCTGTGTGTGCTGCATCCGGTACAGCGATATCGAAGTAACACGATAAAGCATTATGACGAGACACAGTTCTGTCACCGGCGGAATGGGCAAGTTGGCCGTAGCTTTCCTTCCGCTGCTCTGCTTGCTGTCGGCGGGACTGGTGGAAGCTTTCTACCTTCCCGGATTGGCGCCGGTCAACTATTGCCGAAAGTCAGAAATGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4643#0 CCGGTTCGGCCAACAATACACTGGGTTGGGAAAAGTGTATCTTTTTCGTTGAATTTATAA 60 consensus_4643#1 -CGACCCACGCGTCCGTACACTGGGTTGGGAAAAGTGTATCTTTTTCGTTGAATTTATAA 59 ** * * * ******************************************** consensus_4643#0 CAAATTCAACGCAAAAAAACGATTACATTAAGCAGAATGCTGCTGTTCGTGTGAATAGTA 120 consensus_4643#1 CAAATTCAACGCAAAAAAACGATTACATTAAGCAGAATGCTGCTGTTCGTGTGAATAGTA 119 ************************************************************ consensus_4643#0 CAGGTCTTCAGTTTTCGTTGCGTTCAGAAGGGTCGTTGACTACAGACTGTGCAAACATTG 180 consensus_4643#1 CAGGTCTTCAGTTTTCGTTGCGTTCAGAAGGGTCGTTGACTACAGACTGTGCAAACATTG 179 ************************************************************ consensus_4643#0 GTTTGTTGGTGCAGCTATACAGTGCAAGGGGTGGGGTGTACGTGGTTTGAAACCGGCACA 240 consensus_4643#1 GTTTCTTGGTGCAGCTATACAGTGTAAGGGGTGGGGTGGACGTGGTTTGAAACCGGCACA 239 **** ******************* ************* ********************* consensus_4643#0 AAAGCTACTCGTGGAAGGAAGTTAGGGAAATAATACGAACAAAACAACGCTTGTTCGGCG 300 consensus_4643#1 AAAGCTACTCGTGGAAGGAAGTAAGGAAAATAATACGAACAAAACAACGCTTGTTCGGCG 299 ********************** *** ********************************* consensus_4643#0 AAAAGAATCCTCGACCGTCCAAGTAAGCAGCACGTAGTTGTAGGCTGCTTGTGGGAGGGT 360 consensus_4643#1 AAAAGAATCCTCGACCGTCCAAGTAAGCAGCACGTAGTTGTAGGCTGCTTGTGGGAGGGT 359 ************************************************************ consensus_4643#0 GCGTGTGTGTG--AGTGTGTGTGTGTTCGGTTCGCTGTGTGTGTTGCATCCGGTAAAGCG 418 consensus_4643#1 GCGTGTGTGTGTGAGAGTGTGTGTGTGCGGTTCGCTGTGTGTGCTGCATCCGGTACAGCG 419 *********** ** ********** **************** *********** **** consensus_4643#0 ATATCGAAGTAACACGATAAAGCATTATGACGAGACACAGTTCTGTCACCGGCGGAATGG 478 consensus_4643#1 ATATCGAAGTAACACGATAAAGCATTATGACGAGACACAGTTCTGTCACCGGCGGAATGG 479 ************************************************************ consensus_4643#0 GCAAGTTGGCCGTAGCTTTCCTTCCGCTGCTCTGCTTGCTGTCGGCAGGACTGGTGGAAG 538 consensus_4643#1 GCAAGTTGGCCGTAGCTTTCCTTCCGCTGCTCTGCTTGCTGTCGGCGGGACTGGTGGAAG 539 ********************************************** ************* consensus_4643#0 CTTTCTACCTTCCCGGATTGGCGCCGGTCAACTATTGCCGAAAGTCAGAAATGCAAAAGT 598 consensus_4643#1 CTTTCTACCTTCCCGGATTGGCGCCGGTCAACTATTGCCGAAAGTCAGAAATGCAA---- 595 ******************************************************** consensus_4643#0 CATGCAAGTCCGAGGTAACGCTGTACGTGAATCGACTCAACACGGAAGAGTCGGTGATTC 658 consensus_4643#1 ------------------------------------------------------------ consensus_4643#0 CGTACGAGTATCATCACTTTGATTTCTGTCCCATCGACGAAGCGAACTCGCCAGTGGAAA 718 consensus_4643#1 ------------------------------------------------------------ consensus_4643#0 ACTTGGGCCAAGGTGGTGTTTGGCGA 744 consensus_4643#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||