cluster # 4647

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Anopheles gambiae
cluster # 4647 cluster # 4647 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4647#0 length = 659 sequences # 2

consensus_4647#1 length = 481 sequences # 1

consensusID : consensus_4647#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 659
fasta sequence

                              [CCGCCCACGCGTCCGACGGCATGTAAACAAAACAATTGCTGCGTTCGTTTTTCTGCGTGCTTTTACGCTTTTGGCTGGTTTTTAATTAAAACACAACGCTTCCACAGTAATGGACGACGACGAAGAAACCCTCTGTAGGTATGGAACGGCCCTACCAGCATTTGAAGAAGATGCAGTGCCGTCGAAAAAGCCCATCACGGTCGAGGACCAGATCGTGCTGGATAGCAATGGAAAGCGCCGGTTCCATGGCGCATTTACCGGCGGGTTTTCTGCGGGCTACTGGAACACGGTCGGCTCGGAGGAAGGCTGGAAACCGGCCGAGTTTAAAAGCTCGCGCACGGAGAAATCCTCCCTTGCGCGGCAGCAAAATCCGATGGATTTCATGGACGAGGAGGACCTGGGCGAGTTTGGCATTGCGCCACAGCGTGTGCAGGCGAAGGAAGACTTTGCGCACAGCAAGTGCGGCCGGCCGGTCCAACAAACGACGCTTGGACCTGGCCTTTTCCAAGGGTCCAATTCCGGGTCAGCCCGTGTTGCGCGCGCTGCTCGAACTGGCCAGGGAGAAAACGGCCGTGAAGATACTCAAAAAGATGGGCTGGCGGGAAGGGCAAGGAATCGGTGAGCGACAAACGAAGCGAGAGAAAAAGCGAGACAACGAG]

[+] EMBL BM592329             [CCGCCCACGCGTCCGACGGCATGTAAACAAAACAATTGCTGCGTTCGTTTTTCTGCGTGCTTTTACGCTTTTGGCTGGTTTTTAATTAAAACACAACGCTTCCACAGTAATGGACGACGACGAAGAAACCCTCTGTAGGTATGGAACGGCCCTACCAGCATTTGAAGAAGATGCAGTGCCGTCGAAAAAGCCCATCACGGTCGAGGACCAGATCGTGCTGGATAGCAATGGAAAGCGCCGGTTCCATGGCGCATTTACCGGCGGGTTTTCTGCGGGCTACTGGAACACGGTCGGCTCGGAGGAAGGCTGGAAACCGGCCGAGTTTAAAAGCTCGCGCACGGAGAAATCCTCCCTTGCGCGGCAGCAAAATCCGATGGATTTCATGGACGAGGAGGACCTGGGCGAGTTTGGCATTGCGCCACAGCGTGTGCAGGCGAAGGAAGACTTTGCGCACAGCAAGTGCGGCCGGCCGGTCCAACAAACGACGCTTGGACCTGGCCTTTTCCAAGGGTCCAATTCCGGGTCAGCCCGTGTTGCGCGCGCTGCTCGAACTGGCCAGGGAGAAAACGGCCGTGAAGATACTCAAAAAGATGGGCTGGCGGGAAGGGCAAGGAATCGGTGAGCGACAAACGAAGCGAGAGAAAAAGCGAGACAACGAG]
[+] EMBL BM593004             [                     ccgAAACAAAACAATTGCTGCGTTCGTTTTTCTGCGTGCTTTTACGCTTTTGGCTGGTTTTTAATTAAAACACAACGCTTCCACAGTAATGGACGACGACGAAGAAACCCTCTGTAGGTATGGAACGGCCCTACCAGCATTTGAAGAAGATGCAGTGCCGTCGAAAAAGCCCATCACGGTCGAGGACCAGATCGTGCTGGATAGCAATGGAAAGCGCCGGTTCCATGGCGCATTTACCGGCGGGTTTTCTGCGGGCTACTGGAACACGGTCGGCTCGGAGGAAGGCTGGAAACCGGCCGAGTTTAAAAGCTCGCGCACGGAGAAATCCTCCCTTGCGCGGCAGCAAAATCCGATGGATTTCATGGACGAGGAGGACCTGGGCGAGTTTGGCATTGCGCCACAGCGTGTGCAGGCGAAGGAAGACTTTGCGCACAGC AGTGCGGCCGGCCGGTCCAACAAACGACGCTTGGACCTGGCCTTTTCCAAGGGTCCAATTCCGGGTCAGCCCGTGTTGCGCGCGCTGCTCGAACCGGCCAGGGga                                                                                                ]




>consensus_4647#0
CCGCCCACGCGTCCGACGGCATGTAAACAAAACAATTGCTGCGTTCGTTTTTCTGCGTGC
TTTTACGCTTTTGGCTGGTTTTTAATTAAAACACAACGCTTCCACAGTAATGGACGACGA
CGAAGAAACCCTCTGTAGGTATGGAACGGCCCTACCAGCATTTGAAGAAGATGCAGTGCC
GTCGAAAAAGCCCATCACGGTCGAGGACCAGATCGTGCTGGATAGCAATGGAAAGCGCCG
GTTCCATGGCGCATTTACCGGCGGGTTTTCTGCGGGCTACTGGAACACGGTCGGCTCGGA
GGAAGGCTGGAAACCGGCCGAGTTTAAAAGCTCGCGCACGGAGAAATCCTCCCTTGCGCG
GCAGCAAAATCCGATGGATTTCATGGACGAGGAGGACCTGGGCGAGTTTGGCATTGCGCC
ACAGCGTGTGCAGGCGAAGGAAGACTTTGCGCACAGCAAGTGCGGCCGGCCGGTCCAACA
AACGACGCTTGGACCTGGCCTTTTCCAAGGGTCCAATTCCGGGTCAGCCCGTGTTGCGCG
CGCTGCTCGAACTGGCCAGGGAGAAAACGGCCGTGAAGATACTCAAAAAGATGGGCTGGC
GGGAAGGGCAAGGAATCGGTGAGCGACAAACGAAGCGAGAGAAAAAGCGAGACAACGAG

consensusID : consensus_4647#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence

                              [CCGCTACTGGAACACGGTCGGCTCGGAGGAAGGCTGGAAACCGGCCGAGTTTAAAAGCTCGCGCACGGAGAAATCCTCCCTTGCGCGGCAGCAAAATCCGATGGATTTCATGGACGAGGAGGACCTGGGCGAGTTTGGCATTGCGCCACAGCGTGTGCAGGCGAAGGAAGACTTTGCGCACAGCAGTGCGGCCGGCCGGTCCAACAAACGACGCTTGGACCTGGCCTTTTCCAAGGGTCCAATTCCGGGCCAGGGAGAAAACGGCCGTGAAGATACTCAAAAAGATGGGCTGGCGGGAAGGGCAAGGAATCGGTGAGCGACAAACGAAGCGAGAGAAAAAGCGAGACAACGAGCGGAACAGCAAGGAGCAGTATATCTTGAAAATGTACGGCTGTGAGATTCCGGGTCGTGAGGGGCAAACCAGTGCCAGCGCGGAGAACGACGACGGGGATGATGGGGAGGAATCGGACGGTTCGGACAG]

[+] EMBL BM588615             [CCGCTACTGGAACACGGTCGGCTCGGAGGAAGGCTGGAAACCGGCCGAGTTTAAAAGCTCGCGCACGGAGAAATCCTCCCTTGCGCGGCAGCAAAATCCGATGGATTTCATGGACGAGGAGGACCTGGGCGAGTTTGGCATTGCGCCACAGCGTGTGCAGGCGAAGGAAGACTTTGCGCACAGCAGTGCGGCCGGCCGGTCCAACAAACGACGCTTGGACCTGGCCTTTTCCAAGGGTCCAATTCCGGGCCAGGGAGAAAACGGCCGTGAAGATACTCAAAAAGATGGGCTGGCGGGAAGGGCAAGGAATCGGTGAGCGACAAACGAAGCGAGAGAAAAAGCGAGACAACGAGCGGAACAGCAAGGAGCAGTATATCTTGAAAATGTACGGCTGTGAGATTCCGGGTCGTGAGGGGCAAACCAGTGCCAGCGCGGAGAACGACGACGGGGATGATGGGGAGGAATCGGACGGTTCGGACAG]




>consensus_4647#1
CCGCTACTGGAACACGGTCGGCTCGGAGGAAGGCTGGAAACCGGCCGAGTTTAAAAGCTC
GCGCACGGAGAAATCCTCCCTTGCGCGGCAGCAAAATCCGATGGATTTCATGGACGAGGA
GGACCTGGGCGAGTTTGGCATTGCGCCACAGCGTGTGCAGGCGAAGGAAGACTTTGCGCA
CAGCAGTGCGGCCGGCCGGTCCAACAAACGACGCTTGGACCTGGCCTTTTCCAAGGGTCC
AATTCCGGGCCAGGGAGAAAACGGCCGTGAAGATACTCAAAAAGATGGGCTGGCGGGAAG
GGCAAGGAATCGGTGAGCGACAAACGAAGCGAGAGAAAAAGCGAGACAACGAGCGGAACA
GCAAGGAGCAGTATATCTTGAAAATGTACGGCTGTGAGATTCCGGGTCGTGAGGGGCAAA
CCAGTGCCAGCGCGGAGAACGACGACGGGGATGATGGGGAGGAATCGGACGGTTCGGACA
G

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4647#0      CCGCCCACGCGTCCGACGGCATGTAAACAAAACAATTGCTGCGTTCGTTTTTCTGCGTGC 60
consensus_4647#1      ------------------------------------------------------------
                                                                                  

consensus_4647#0      TTTTACGCTTTTGGCTGGTTTTTAATTAAAACACAACGCTTCCACAGTAATGGACGACGA 120
consensus_4647#1      ------------------------------------------------------------
                                                                                  

consensus_4647#0      CGAAGAAACCCTCTGTAGGTATGGAACGGCCCTACCAGCATTTGAAGAAGATGCAGTGCC 180
consensus_4647#1      ------------------------------------------------------------
                                                                                  

consensus_4647#0      GTCGAAAAAGCCCATCACGGTCGAGGACCAGATCGTGCTGGATAGCAATGGAAAGCGCCG 240
consensus_4647#1      ------------------------------------------------------------
                                                                                  

consensus_4647#0      GTTCCATGGCGCATTTACCGGCGGGTTTTCTGCGGGCTACTGGAACACGGTCGGCTCGGA 300
consensus_4647#1      ---------------------------------CCGCTACTGGAACACGGTCGGCTCGGA 27
                                                         *************************

consensus_4647#0      GGAAGGCTGGAAACCGGCCGAGTTTAAAAGCTCGCGCACGGAGAAATCCTCCCTTGCGCG 360
consensus_4647#1      GGAAGGCTGGAAACCGGCCGAGTTTAAAAGCTCGCGCACGGAGAAATCCTCCCTTGCGCG 87
                      ************************************************************

consensus_4647#0      GCAGCAAAATCCGATGGATTTCATGGACGAGGAGGACCTGGGCGAGTTTGGCATTGCGCC 420
consensus_4647#1      GCAGCAAAATCCGATGGATTTCATGGACGAGGAGGACCTGGGCGAGTTTGGCATTGCGCC 147
                      ************************************************************

consensus_4647#0      ACAGCGTGTGCAGGCGAAGGAAGACTTTGCGCACAGCAAGTGCGGCCGGCCGGTCCAACA 480
consensus_4647#1      ACAGCGTGTGCAGGCGAAGGAAGACTTTGCGCACAGCA-GTGCGGCCGGCCGGTCCAACA 206
                      ************************************** *********************

consensus_4647#0      AACGACGCTTGGACCTGGCCTTTTCCAAGGGTCCAATTCCGGGTCAGCCCGTGTTGCGCG 540
consensus_4647#1      AACGACGCTTGGACCTGGCCTTTTCCAAGGGTCCAATTCCGGG----------------- 249
                      *******************************************                 

consensus_4647#0      CGCTGCTCGAACTGGCCAGGGAGAAAACGGCCGTGAAGATACTCAAAAAGATGGGCTGGC 600
consensus_4647#1      ---------------CCAGGGAGAAAACGGCCGTGAAGATACTCAAAAAGATGGGCTGGC 294
                                     *********************************************

consensus_4647#0      GGGAAGGGCAAGGAATCGGTGAGCGACAAACGAAGCGAGAGAAAAAGCGAGACAACGAG- 659
consensus_4647#1      GGGAAGGGCAAGGAATCGGTGAGCGACAAACGAAGCGAGAGAAAAAGCGAGACAACGAGC 354
                      *********************************************************** 

consensus_4647#0      ------------------------------------------------------------
consensus_4647#1      GGAACAGCAAGGAGCAGTATATCTTGAAAATGTACGGCTGTGAGATTCCGGGTCGTGAGG 414
                                                                                  

consensus_4647#0      ------------------------------------------------------------
consensus_4647#1      GGCAAACCAGTGCCAGCGCGGAGAACGACGACGGGGATGATGGGGAGGAATCGGACGGTT 474
                                                                                  

consensus_4647#0      -------
consensus_4647#1      CGGACAG 481